RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 C8orf87E5RJ46 101 aa4.4□□□□□ -1.71
USP4-207ENST00000462673 ACYP2P14621 99 aa4.39□□□□□ -1.71
USP4-207ENST00000462673 RETNLBQ9BQ08 111 aa4.39□□□□□ -1.71
USP4-207ENST00000462673 TPRXLQ17RH7 258 aa4.38□□□□□ -1.71
USP4-207ENST00000462673 DMAC1Q96GE9 116 aa4.37□□□□□ -1.71
USP4-207ENST00000462673 KRTAP13-3Q3SY46 172 aa4.36□□□□□ -1.71
USP4-207ENST00000462673 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.35□□□□□ -1.71
USP4-207ENST00000462673 KRTAP9-2Q9BYQ4 174 aa4.35□□□□□ -1.71
USP4-207ENST00000462673 A0A1B0GU69 56 aa4.33□□□□□ -1.72
USP4-207ENST00000462673 LINC00313P59037 77 aa4.33□□□□□ -1.72
USP4-207ENST00000462673 KRTAP9-6A0A140TA67 174 aa4.32□□□□□ -1.72
USP4-207ENST00000462673 SEC61BP60468 96 aaKnown RBP4.31□□□□□ -1.72
USP4-207ENST00000462673 Q5W150 140 aa4.31□□□□□ -1.72
USP4-207ENST00000462673 SPATA8Q6RVD6 105 aa4.3□□□□□ -1.72
USP4-207ENST00000462673 NOTCH2NLQ7Z3S9 236 aa4.3□□□□□ -1.72
USP4-207ENST00000462673 IGKV2-30P06310 120 aa4.29□□□□□ -1.72
USP4-207ENST00000462673 UQCR11O14957 56 aa4.28□□□□□ -1.72
USP4-207ENST00000462673 MIR22HGQ0VDD5 57 aa4.27□□□□□ -1.73
USP4-207ENST00000462673 C9orf92A6NGG3 77 aa4.26□□□□□ -1.73
USP4-207ENST00000462673 LINC01554Q52M75 96 aa4.26□□□□□ -1.73
USP4-207ENST00000462673 PRAC1Q96KF2 57 aa4.26□□□□□ -1.73
USP4-207ENST00000462673 KRTAP4-12Q9BQ66 201 aa4.25□□□□□ -1.73
USP4-207ENST00000462673 HMCN2Q8NDA2 5059 aa4.24□□□□□ -1.73
USP4-207ENST00000462673 H3BS24 57 aa4.24□□□□□ -1.73
USP4-207ENST00000462673 IGKV2D-30A0A075B6S6 120 aa4.22□□□□□ -1.73
USP4-207ENST00000462673 RPL37P61927 97 aaKnown RBP4.2□□□□□ -1.74
USP4-207ENST00000462673 ADM2Q7Z4H4 148 aa4.2□□□□□ -1.74
USP4-207ENST00000462673 LPAP08519 4548 aa4.2□□□□□ -1.74
USP4-207ENST00000462673 KRTAP16-1A8MUX0 517 aa4.19□□□□□ -1.74
USP4-207ENST00000462673 UBR4Q5T4S7 5183 aa4.19□□□□□ -1.74
USP4-207ENST00000462673 KRTAP19-1Q8IUB9 90 aa4.18□□□□□ -1.74
USP4-207ENST00000462673 LRP2P98164 4655 aa4.17□□□□□ -1.74
USP4-207ENST00000462673 LCE3BQ5TA77 95 aa4.17□□□□□ -1.74
USP4-207ENST00000462673 C20orf166-AS1Q96NR2 134 aa4.17□□□□□ -1.74
USP4-207ENST00000462673 A8MUU9 505 aa4.16□□□□□ -1.74
USP4-207ENST00000462673 CSAG1Q6PB30 78 aa4.15□□□□□ -1.75
USP4-207ENST00000462673 KRTAP9-9Q9BYP9 154 aa4.14□□□□□ -1.75
USP4-207ENST00000462673 KRTAP9-4Q9BYQ2 154 aa4.14□□□□□ -1.75
USP4-207ENST00000462673 H0YAA0 97 aa4.06□□□□□ -1.76
USP4-207ENST00000462673 KRTAP25-1Q3LHN0 102 aa4.06□□□□□ -1.76
USP4-207ENST00000462673 RNF213Q63HN8 5207 aa4.05□□□□□ -1.76
USP4-207ENST00000462673 K7ERS5 55 aa4.05□□□□□ -1.76
USP4-207ENST00000462673 COX6B2Q6YFQ2 88 aa4.05□□□□□ -1.76
USP4-207ENST00000462673 MUC2Q02817 5179 aa4.05□□□□□ -1.76
USP4-207ENST00000462673 KRTAP4-8A0A0G2JLE6 195 aa4.04□□□□□ -1.76
USP4-207ENST00000462673 H1FX-AS1Q4G0G2 97 aa4.04□□□□□ -1.76
USP4-207ENST00000462673 MUC17Q685J3 4493 aa4.04□□□□□ -1.76
USP4-207ENST00000462673 A0A1B0GU33 70 aa4.02□□□□□ -1.77
USP4-207ENST00000462673 KRTAP4-1Q9BYQ7 146 aa4.02□□□□□ -1.77
USP4-207ENST00000462673 ROMO1P60602 79 aa3.97□□□□□ -1.77
USP4-207ENST00000462673 M0R2T5 61 aa3.96□□□□□ -1.78
USP4-207ENST00000462673 KRTAP19-2Q3LHN2 52 aa3.9□□□□□ -1.79
USP4-207ENST00000462673 LCE1DQ5T752 114 aa3.9□□□□□ -1.79
USP4-207ENST00000462673 KRTAP4-7Q9BYR0 210 aa3.89□□□□□ -1.79
USP4-207ENST00000462673 KRTAP3-1Q9BYR8 98 aa3.89□□□□□ -1.79
USP4-207ENST00000462673 MT1HP80294 61 aa3.88□□□□□ -1.79
USP4-207ENST00000462673 LCE4AQ5TA78 99 aa3.87□□□□□ -1.79
USP4-207ENST00000462673 FAT4Q6V0I7 4981 aa3.85□□□□□ -1.79
USP4-207ENST00000462673 SPINT4Q6UDR6 99 aa3.82□□□□□ -1.8
USP4-207ENST00000462673 KRTAP4-9Q9BYQ8 210 aa3.82□□□□□ -1.8
USP4-207ENST00000462673 CRIPTQ9P021 101 aa3.8□□□□□ -1.8
USP4-207ENST00000462673 S4R3F8 94 aa3.8□□□□□ -1.8
USP4-207ENST00000462673 P0C880 135 aa3.79□□□□□ -1.8
USP4-207ENST00000462673 KRTAP10-6P60371 365 aaPredicted RBP3.79□□□□□ -1.8
USP4-207ENST00000462673 KRTAP9-7A8MTY7 169 aa3.77□□□□□ -1.81
USP4-207ENST00000462673 A0A0D9SG42 100 aa3.76□□□□□ -1.81
USP4-207ENST00000462673 KRTAP13-4Q3LI77 160 aa3.75□□□□□ -1.81
USP4-207ENST00000462673 KRTAP4-2Q9BYR5 136 aa3.75□□□□□ -1.81
USP4-207ENST00000462673 KRTAP19-4Q3LI73 84 aa3.72□□□□□ -1.81
USP4-207ENST00000462673 FLGP20930 4061 aaPredicted RBP3.71□□□□□ -1.81
USP4-207ENST00000462673 KRTAP10-10P60014 251 aa3.71□□□□□ -1.82
USP4-207ENST00000462673 KRTAP15-1Q3LI76 137 aa3.71□□□□□ -1.82
USP4-207ENST00000462673 KRTAP9-8Q9BYQ0 159 aa3.7□□□□□ -1.82
USP4-207ENST00000462673 C10orf95Q9H7T3 257 aa3.69□□□□□ -1.82
USP4-207ENST00000462673 KRTAP4-11Q9BYQ6 195 aa3.68□□□□□ -1.82
USP4-207ENST00000462673 NDUFAF8A1L188 74 aa3.67□□□□□ -1.82
USP4-207ENST00000462673 KRTAP12-2P59991 146 aa3.67□□□□□ -1.82
USP4-207ENST00000462673 KRTAP12-1P59990 96 aa3.66□□□□□ -1.82
USP4-207ENST00000462673 M0QZ58 72 aa3.65□□□□□ -1.83
USP4-207ENST00000462673 MT2AP02795 61 aa3.65□□□□□ -1.83
USP4-207ENST00000462673 KRTAP9-3Q9BYQ3 159 aa3.62□□□□□ -1.83
USP4-207ENST00000462673 MT1FP04733 61 aa3.61□□□□□ -1.83
USP4-207ENST00000462673 LCE5AQ5TCM9 118 aa3.61□□□□□ -1.83
USP4-207ENST00000462673 CRCT1Q9UGL9 99 aa3.58□□□□□ -1.84
USP4-207ENST00000462673 FSIP2Q5CZC0 6907 aa3.54□□□□□ -1.84
USP4-207ENST00000462673 R4GN34 69 aa3.51□□□□□ -1.85
USP4-207ENST00000462673 SPRR2GQ9BYE4 73 aa3.5□□□□□ -1.85
USP4-207ENST00000462673 KRTAP23-1A1A580 65 aa3.49□□□□□ -1.85
USP4-207ENST00000462673 PP632Q6XCG6 107 aa3.47□□□□□ -1.85
USP4-207ENST00000462673 PLAC4Q8WY50 150 aa3.47□□□□□ -1.85
USP4-207ENST00000462673 LUZP6Q538Z0 58 aa3.44□□□□□ -1.86
USP4-207ENST00000462673 KRTAP19-8Q3LI54 63 aa3.43□□□□□ -1.86
USP4-207ENST00000462673 A0A0A0MQY5 61 aa3.4□□□□□ -1.87
USP4-207ENST00000462673 KRTAP19-6Q3LI70 58 aa3.4□□□□□ -1.87
USP4-207ENST00000462673 KRTAP5-3Q6L8H2 238 aa3.39□□□□□ -1.87
USP4-207ENST00000462673 PRO2289Q9P1D8 64 aa3.38□□□□□ -1.87
USP4-207ENST00000462673 USH2AO75445 5202 aa3.37□□□□□ -1.87
USP4-207ENST00000462673 MT1BP07438 61 aa3.35□□□□□ -1.87
USP4-207ENST00000462673 CAMK2N1Q7Z7J9 78 aa3.35□□□□□ -1.87
USP4-207ENST00000462673 SSPOA2VEC9 5147 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 103.1 ms