RNA–Protein interactions for RNA: ENST00000435213.6

GARNL3-205, Transcript of GTPase activating Rap/RanGAP domain like 3, humanhuman

TSL 2 BASIC

Gene GARNL3, Length 3,599 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GARNL3-205ENST00000435213 FAT2Q9NYQ8 4349 aa3.84□□□□□ -1.79
GARNL3-205ENST00000435213 SACSQ9NZJ4 4579 aa3.84□□□□□ -1.79
GARNL3-205ENST00000435213 RPS29P62273 56 aaKnown RBP3.83□□□□□ -1.8
GARNL3-205ENST00000435213 RYR2Q92736 4967 aa3.81□□□□□ -1.8
GARNL3-205ENST00000435213 XP32Q5T750 250 aa3.81□□□□□ -1.8
GARNL3-205ENST00000435213 S4R3F8 94 aa3.81□□□□□ -1.8
GARNL3-205ENST00000435213 PKHD1P08F94 4074 aa3.8□□□□□ -1.8
GARNL3-205ENST00000435213 EPPK1P58107 5090 aaKnown RBP3.8□□□□□ -1.8
GARNL3-205ENST00000435213 KIAA1109Q2LD37 5005 aa3.79□□□□□ -1.8
GARNL3-205ENST00000435213 KRTAP10-1P60331 282 aa3.78□□□□□ -1.8
GARNL3-205ENST00000435213 KRTAP3-1Q9BYR8 98 aa3.78□□□□□ -1.8
GARNL3-205ENST00000435213 DNAH5Q8TE73 4624 aa3.77□□□□□ -1.81
GARNL3-205ENST00000435213 KRTAP3-2Q9BYR7 98 aa3.74□□□□□ -1.81
GARNL3-205ENST00000435213 R4GN34 69 aa3.74□□□□□ -1.81
GARNL3-205ENST00000435213 FAT1Q14517 4588 aa3.72□□□□□ -1.81
GARNL3-205ENST00000435213 KRTAP13-4Q3LI77 160 aa3.71□□□□□ -1.82
GARNL3-205ENST00000435213 DYNC1H1Q14204 4646 aaKnown RBP3.71□□□□□ -1.82
GARNL3-205ENST00000435213 C9orf92A6NGG3 77 aa3.71□□□□□ -1.82
GARNL3-205ENST00000435213 VPS13BQ7Z7G8 4022 aa3.7□□□□□ -1.82
GARNL3-205ENST00000435213 KRTAP10-6P60371 365 aaPredicted RBP3.69□□□□□ -1.82
GARNL3-205ENST00000435213 LRP1BQ9NZR2 4599 aa3.68□□□□□ -1.82
GARNL3-205ENST00000435213 KRTAP12-2P59991 146 aa3.68□□□□□ -1.82
GARNL3-205ENST00000435213 INE1O15225 51 aa3.67□□□□□ -1.82
GARNL3-205ENST00000435213 KRTAP12-1P59990 96 aa3.64□□□□□ -1.83
GARNL3-205ENST00000435213 Q5VSD8 79 aa3.64□□□□□ -1.83
GARNL3-205ENST00000435213 RYR1P21817 5038 aa3.64□□□□□ -1.83
GARNL3-205ENST00000435213 APOBP04114 4563 aaKnown RBP3.64□□□□□ -1.83
GARNL3-205ENST00000435213 A0A1B0GVY2 172 aa3.63□□□□□ -1.83
GARNL3-205ENST00000435213 KRTAP23-1A1A580 65 aa3.63□□□□□ -1.83
GARNL3-205ENST00000435213 MYCBP2O75592 4640 aa3.63□□□□□ -1.83
GARNL3-205ENST00000435213 KRTAP4-5Q9BYR2 181 aa3.63□□□□□ -1.83
GARNL3-205ENST00000435213 KRTAP3-3Q9BYR6 98 aa3.61□□□□□ -1.83
GARNL3-205ENST00000435213 FAT3Q8TDW7 4589 aa3.59□□□□□ -1.83
GARNL3-205ENST00000435213 PP632Q6XCG6 107 aa3.58□□□□□ -1.84
GARNL3-205ENST00000435213 KRTAP17-1Q9BYP8 105 aa3.58□□□□□ -1.84
GARNL3-205ENST00000435213 BIRC6Q9NR09 4857 aa3.58□□□□□ -1.84
GARNL3-205ENST00000435213 LRP1Q07954 4544 aaKnown RBP3.58□□□□□ -1.84
GARNL3-205ENST00000435213 ABCA13Q86UQ4 5058 aa3.57□□□□□ -1.84
GARNL3-205ENST00000435213 KRTAP10-4P60372 401 aaPredicted RBP3.57□□□□□ -1.84
GARNL3-205ENST00000435213 KRTAP10-8P60410 259 aa3.57□□□□□ -1.84
GARNL3-205ENST00000435213 HERC2O95714 4834 aa3.56□□□□□ -1.84
GARNL3-205ENST00000435213 PCLOQ9Y6V0 5065 aa3.55□□□□□ -1.84
GARNL3-205ENST00000435213 M0QZ58 72 aa3.55□□□□□ -1.84
GARNL3-205ENST00000435213 HSPG2P98160 4391 aa3.54□□□□□ -1.84
GARNL3-205ENST00000435213 TNXBP22105 4242 aa3.52□□□□□ -1.85
GARNL3-205ENST00000435213 HERC1Q15751 4861 aa3.49□□□□□ -1.85
GARNL3-205ENST00000435213 SPRR5A0A1B0GTR4 108 aa3.46□□□□□ -1.86
GARNL3-205ENST00000435213 LRP2P98164 4655 aa3.39□□□□□ -1.87
GARNL3-205ENST00000435213 RNF213Q63HN8 5207 aa3.37□□□□□ -1.87
GARNL3-205ENST00000435213 UBR4Q5T4S7 5183 aa3.35□□□□□ -1.87
GARNL3-205ENST00000435213 LPAP08519 4548 aa3.34□□□□□ -1.88
GARNL3-205ENST00000435213 MT1HL1P0DM35 61 aa3.33□□□□□ -1.88
GARNL3-205ENST00000435213 MUC17Q685J3 4493 aa3.32□□□□□ -1.88
GARNL3-205ENST00000435213 MUC2Q02817 5179 aa3.31□□□□□ -1.88
GARNL3-205ENST00000435213 HMCN2Q8NDA2 5059 aa3.21□□□□□ -1.9
GARNL3-205ENST00000435213 LORP23490 312 aaPredicted RBP3.2□□□□□ -1.9
GARNL3-205ENST00000435213 TNP1P09430 55 aa3.2□□□□□ -1.9
GARNL3-205ENST00000435213 FAT4Q6V0I7 4981 aa3.17□□□□□ -1.9
GARNL3-205ENST00000435213 LCE2CQ5TA81 110 aa3.17□□□□□ -1.9
GARNL3-205ENST00000435213 LCE2AQ5TA79 106 aaPredicted RBP3.15□□□□□ -1.91
GARNL3-205ENST00000435213 LCE2DQ5TA82 110 aaPredicted RBP3.12□□□□□ -1.91
GARNL3-205ENST00000435213 FSIP2Q5CZC0 6907 aa3.11□□□□□ -1.91
GARNL3-205ENST00000435213 M0R2T5 61 aa3.09□□□□□ -1.91
GARNL3-205ENST00000435213 KRTAP19-2Q3LHN2 52 aa3.07□□□□□ -1.92
GARNL3-205ENST00000435213 KRTAP4-1Q9BYQ7 146 aa3.07□□□□□ -1.92
GARNL3-205ENST00000435213 LCE2BO14633 110 aa3.01□□□□□ -1.93
GARNL3-205ENST00000435213 KRTAP10-10P60014 251 aa2.99□□□□□ -1.93
GARNL3-205ENST00000435213 FLGP20930 4061 aaPredicted RBP2.98□□□□□ -1.93
GARNL3-205ENST00000435213 SPRR2GQ9BYE4 73 aa2.91□□□□□ -1.94
GARNL3-205ENST00000435213 LCE3AQ5TA76 89 aa2.88□□□□□ -1.95
GARNL3-205ENST00000435213 USH2AO75445 5202 aa2.87□□□□□ -1.95
GARNL3-205ENST00000435213 KRTAP19-1Q8IUB9 90 aa2.86□□□□□ -1.95
GARNL3-205ENST00000435213 MT1HP80294 61 aa2.84□□□□□ -1.95
GARNL3-205ENST00000435213 KRTAP8-1Q8IUC2 63 aa2.84□□□□□ -1.95
GARNL3-205ENST00000435213 KRTAP10-12P60413 245 aa2.78□□□□□ -1.96
GARNL3-205ENST00000435213 KRTAP19-8Q3LI54 63 aa2.76□□□□□ -1.97
GARNL3-205ENST00000435213 KRTAP12-3P60328 96 aa2.75□□□□□ -1.97
GARNL3-205ENST00000435213 MT2AP02795 61 aa2.72□□□□□ -1.97
GARNL3-205ENST00000435213 MT1FP04733 61 aa2.72□□□□□ -1.97
GARNL3-205ENST00000435213 KRTAP10-5P60370 271 aa2.72□□□□□ -1.97
GARNL3-205ENST00000435213 MT1XP80297 61 aa2.71□□□□□ -1.98
GARNL3-205ENST00000435213 MT1BP07438 61 aa2.69□□□□□ -1.98
GARNL3-205ENST00000435213 KRTAP9-8Q9BYQ0 159 aa2.68□□□□□ -1.98
GARNL3-205ENST00000435213 KRTAP9-2Q9BYQ4 174 aa2.66□□□□□ -1.98
GARNL3-205ENST00000435213 KRTAP2-3P0C7H8 128 aa2.65□□□□□ -1.98
GARNL3-205ENST00000435213 KRTAP2-4Q9BYR9 128 aa2.65□□□□□ -1.98
GARNL3-205ENST00000435213 KRTAP2-1Q9BYU5 128 aa2.65□□□□□ -1.98
GARNL3-205ENST00000435213 KRTAP2-2Q9BYT5 123 aa2.65□□□□□ -1.99
GARNL3-205ENST00000435213 SSPOA2VEC9 5147 aa2.63□□□□□ -1.99
GARNL3-205ENST00000435213 KRTAP10-7P60409 375 aaPredicted RBP2.63□□□□□ -1.99
GARNL3-205ENST00000435213 LCE3CQ5T5A8 94 aa2.6□□□□□ -1.99
GARNL3-205ENST00000435213 KMT2DO14686 5537 aa2.59□□□□□ -2
GARNL3-205ENST00000435213 SYNE2Q8WXH0 6885 aaKnown RBP2.58□□□□□ -2
GARNL3-205ENST00000435213 KRTAP9-3Q9BYQ3 159 aa2.56□□□□□ -2
GARNL3-205ENST00000435213 KRTAP19-5Q3LI72 72 aa2.56□□□□□ -2
GARNL3-205ENST00000435213 FCGBPQ9Y6R7 5405 aaPredicted RBP2.53□□□□□ -2
GARNL3-205ENST00000435213 MACF1Q9UPN3 7388 aaKnown RBP2.53□□□□□ -2
GARNL3-205ENST00000435213 CRCT1Q9UGL9 99 aa2.52□□□□□ -2.01
GARNL3-205ENST00000435213 KRTAP12-4P60329 112 aa2.51□□□□□ -2.01
GARNL3-205ENST00000435213 KRTAP6-3Q3LI67 103 aa2.49□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 113.9 ms