RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 A0A087WVE0 104 aa6.33□□□□□ -1.4
SDC1-204ENST00000429035 CYP4F30PQ9H0H9 118 aa6.32□□□□□ -1.4
SDC1-204ENST00000429035 KRTAP5-9P26371 169 aa6.31□□□□□ -1.4
SDC1-204ENST00000429035 CRIPTQ9P021 101 aa6.3□□□□□ -1.4
SDC1-204ENST00000429035 TRAV22A0A0B4J277 110 aa6.29□□□□□ -1.4
SDC1-204ENST00000429035 FAM240AA0A1B0GVK7 77 aa6.29□□□□□ -1.4
SDC1-204ENST00000429035 LOC101927531A0A1B0GV80 90 aa6.27□□□□□ -1.41
SDC1-204ENST00000429035 ACYP1P07311 99 aa6.24□□□□□ -1.41
SDC1-204ENST00000429035 KMT2DO14686 5537 aa6.23□□□□□ -1.41
SDC1-204ENST00000429035 NDUFC1O43677 76 aa6.23□□□□□ -1.41
SDC1-204ENST00000429035 MDN1Q9NU22 5596 aa6.2□□□□□ -1.42
SDC1-204ENST00000429035 A8MUN3 132 aa6.19□□□□□ -1.42
SDC1-204ENST00000429035 ADM2Q7Z4H4 148 aa6.19□□□□□ -1.42
SDC1-204ENST00000429035 H0Y9P7 68 aa6.18□□□□□ -1.42
SDC1-204ENST00000429035 SPRR2FQ96RM1 72 aa6.18□□□□□ -1.42
SDC1-204ENST00000429035 H0YAA0 97 aa6.16□□□□□ -1.42
SDC1-204ENST00000429035 HIST1H4AP62805 103 aaKnown RBP6.16□□□□□ -1.42
SDC1-204ENST00000429035 PRO2289Q9P1D8 64 aa6.16□□□□□ -1.42
SDC1-204ENST00000429035 SPRR2EP22531 72 aa6.15□□□□□ -1.42
SDC1-204ENST00000429035 SPRR2BP35325 72 aa6.15□□□□□ -1.42
SDC1-204ENST00000429035 SPRR2AP35326 72 aa6.15□□□□□ -1.42
SDC1-204ENST00000429035 ATOX1O00244 68 aa6.14□□□□□ -1.43
SDC1-204ENST00000429035 UQCRQO14949 82 aa6.14□□□□□ -1.43
SDC1-204ENST00000429035 ATP5EP2Q5VTU8 51 aa6.13□□□□□ -1.43
SDC1-204ENST00000429035 KRTAP2-3P0C7H8 128 aa6.12□□□□□ -1.43
SDC1-204ENST00000429035 KRTAP2-4Q9BYR9 128 aa6.12□□□□□ -1.43
SDC1-204ENST00000429035 J3QR89 54 aa6.11□□□□□ -1.43
SDC1-204ENST00000429035 PLAC4Q8WY50 150 aa6.1□□□□□ -1.43
SDC1-204ENST00000429035 MT1XP80297 61 aa6.09□□□□□ -1.43
SDC1-204ENST00000429035 LINC00643Q86TS7 51 aa6.08□□□□□ -1.44
SDC1-204ENST00000429035 KRTAP8-1Q8IUC2 63 aa6.08□□□□□ -1.44
SDC1-204ENST00000429035 LINC00208Q96KT6 92 aa6.05□□□□□ -1.44
SDC1-204ENST00000429035 R4GN34 69 aa6.05□□□□□ -1.44
SDC1-204ENST00000429035 M0QZ58 72 aa6.01□□□□□ -1.45
SDC1-204ENST00000429035 P0C880 135 aa5.99□□□□□ -1.45
SDC1-204ENST00000429035 C20orf197Q8N268 126 aa5.99□□□□□ -1.45
SDC1-204ENST00000429035 K7ERU9 68 aa5.98□□□□□ -1.45
SDC1-204ENST00000429035 MP68P56378 58 aa5.98□□□□□ -1.45
SDC1-204ENST00000429035 LINC01554Q52M75 96 aa5.97□□□□□ -1.45
SDC1-204ENST00000429035 LCE1AQ5T7P2 110 aa5.97□□□□□ -1.45
SDC1-204ENST00000429035 KRTAP12-2P59991 146 aa5.96□□□□□ -1.46
SDC1-204ENST00000429035 SPRR2DP22532 72 aa5.94□□□□□ -1.46
SDC1-204ENST00000429035 KRTAP2-2Q9BYT5 123 aa5.92□□□□□ -1.46
SDC1-204ENST00000429035 KRTAP2-1Q9BYU5 128 aa5.92□□□□□ -1.46
SDC1-204ENST00000429035 KRTAP4-8A0A0G2JLE6 195 aa5.91□□□□□ -1.46
SDC1-204ENST00000429035 KRTAP4-8Q9BYQ9 185 aa5.91□□□□□ -1.46
SDC1-204ENST00000429035 OCR1Q9BZK8 76 aa5.9□□□□□ -1.46
SDC1-204ENST00000429035 MT-ATP8P03928 68 aa5.86□□□□□ -1.47
SDC1-204ENST00000429035 DMAC1Q96GE9 116 aa5.86□□□□□ -1.47
SDC1-204ENST00000429035 SCGB1A1P11684 91 aa5.84□□□□□ -1.47
SDC1-204ENST00000429035 KRTAP10-7P60409 375 aaPredicted RBP5.84□□□□□ -1.47
SDC1-204ENST00000429035 KRTAP3-2Q9BYR7 98 aa5.84□□□□□ -1.47
SDC1-204ENST00000429035 H3BPC8 53 aa5.81□□□□□ -1.48
SDC1-204ENST00000429035 LCE3BQ5TA77 95 aa5.78□□□□□ -1.48
SDC1-204ENST00000429035 KRTAP10-12P60413 245 aa5.75□□□□□ -1.49
SDC1-204ENST00000429035 SMIM20Q8N5G0 67 aa5.75□□□□□ -1.49
SDC1-204ENST00000429035 TRAV7A0A075B6U4 112 aa5.71□□□□□ -1.5
SDC1-204ENST00000429035 ACYP2P14621 99 aa5.68□□□□□ -1.5
SDC1-204ENST00000429035 SPTSSBQ8NFR3 76 aa5.68□□□□□ -1.5
SDC1-204ENST00000429035 CHKB-CPT1BH3BT56 60 aa5.65□□□□□ -1.5
SDC1-204ENST00000429035 SERP2Q8N6R1 65 aa5.6□□□□□ -1.51
SDC1-204ENST00000429035 CAMK2N1Q7Z7J9 78 aa5.56□□□□□ -1.52
SDC1-204ENST00000429035 SNURFQ9Y675 71 aa5.52□□□□□ -1.53
SDC1-204ENST00000429035 COX7CP15954 63 aa5.51□□□□□ -1.53
SDC1-204ENST00000429035 KRTAP13-4Q3LI77 160 aa5.5□□□□□ -1.53
SDC1-204ENST00000429035 SPANXA2-OT1Q8N9U9 137 aa5.5□□□□□ -1.53
SDC1-204ENST00000429035 DSTQ03001 7570 aaKnown RBP5.47□□□□□ -1.53
SDC1-204ENST00000429035 KRTAP4-9Q9BYQ8 210 aa5.44□□□□□ -1.54
SDC1-204ENST00000429035 KRTAP19-7Q3SYF9 63 aa5.43□□□□□ -1.54
SDC1-204ENST00000429035 LCE5AQ5TCM9 118 aa5.43□□□□□ -1.54
SDC1-204ENST00000429035 MT1EP04732 61 aa5.42□□□□□ -1.54
SDC1-204ENST00000429035 KRTAP19-3Q7Z4W3 81 aa5.42□□□□□ -1.54
SDC1-204ENST00000429035 CYSTM1Q9H1C7 97 aa5.42□□□□□ -1.54
SDC1-204ENST00000429035 GPR98Q8WXG9 6306 aa5.42□□□□□ -1.54
SDC1-204ENST00000429035 H7BZZ5 65 aa5.41□□□□□ -1.54
SDC1-204ENST00000429035 A0A0D9SG42 100 aa5.39□□□□□ -1.55
SDC1-204ENST00000429035 ANAPC13Q9BS18 74 aa5.39□□□□□ -1.55
SDC1-204ENST00000429035 SPINT4Q6UDR6 99 aa5.32□□□□□ -1.56
SDC1-204ENST00000429035 SEC61GP60059 68 aa5.31□□□□□ -1.56
SDC1-204ENST00000429035 CCDC179H3BU77 68 aa5.3□□□□□ -1.56
SDC1-204ENST00000429035 COA5Q86WW8 74 aa5.3□□□□□ -1.56
SDC1-204ENST00000429035 SERP1Q9Y6X1 66 aa5.3□□□□□ -1.56
SDC1-204ENST00000429035 KRTAP19-5Q3LI72 72 aa5.29□□□□□ -1.56
SDC1-204ENST00000429035 SPATA8Q6RVD6 105 aa5.29□□□□□ -1.56
SDC1-204ENST00000429035 LCE1DQ5T752 114 aa5.27□□□□□ -1.57
SDC1-204ENST00000429035 PP632Q6XCG6 107 aa5.25□□□□□ -1.57
SDC1-204ENST00000429035 MT1GP13640 62 aa5.23□□□□□ -1.57
SDC1-204ENST00000429035 MT4P47944 62 aa5.23□□□□□ -1.57
SDC1-204ENST00000429035 ATP5EP56381 51 aaPredicted RBP5.21□□□□□ -1.58
SDC1-204ENST00000429035 A0A1B0GU33 70 aa5.2□□□□□ -1.58
SDC1-204ENST00000429035 KRTAP12-1P59990 96 aa5.18□□□□□ -1.58
SDC1-204ENST00000429035 LCE4AQ5TA78 99 aa5.18□□□□□ -1.58
SDC1-204ENST00000429035 MT1MQ8N339 61 aa5.18□□□□□ -1.58
SDC1-204ENST00000429035 TMEM258P61165 79 aa5.16□□□□□ -1.58
SDC1-204ENST00000429035 MT1LQ93083 61 aa5.15□□□□□ -1.59
SDC1-204ENST00000429035 HMCN1Q96RW7 5635 aa5.11□□□□□ -1.59
SDC1-204ENST00000429035 KRTAP4-3Q9BYR4 195 aa5.1□□□□□ -1.59
SDC1-204ENST00000429035 C10orf95Q9H7T3 257 aa5.09□□□□□ -1.59
SDC1-204ENST00000429035 LCE3AQ5TA76 89 aa5.08□□□□□ -1.6
SDC1-204ENST00000429035 SMIM26A0A096LP01 95 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms