RNA–Protein interactions for RNA: ENST00000428313.5

C9orf3-206, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best)

Gene C9orf3, Length 2,288 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-206ENST00000428313 KRTAP12-2P59991 146 aa8.23□□□□□ -1.09
C9orf3-206ENST00000428313 LUZP6Q538Z0 58 aa8.22□□□□□ -1.09
C9orf3-206ENST00000428313 VPS13BQ7Z7G8 4022 aa8.18□□□□□ -1.1
C9orf3-206ENST00000428313 SACSQ9NZJ4 4579 aa8.17□□□□□ -1.1
C9orf3-206ENST00000428313 KRTAP12-1P59990 96 aa8.15□□□□□ -1.1
C9orf3-206ENST00000428313 DMBT1Q9UGM3 2413 aaPredicted RBP8.1□□□□□ -1.11
C9orf3-206ENST00000428313 KMT2CQ8NEZ4 4911 aaKnown RBP8.08□□□□□ -1.12
C9orf3-206ENST00000428313 PKD1P98161 4303 aa8.05□□□□□ -1.12
C9orf3-206ENST00000428313 PKHD1L1Q86WI1 4243 aa8.03□□□□□ -1.12
C9orf3-206ENST00000428313 RYR3Q15413 4870 aa8.03□□□□□ -1.12
C9orf3-206ENST00000428313 PLAC4Q8WY50 150 aa7.98□□□□□ -1.13
C9orf3-206ENST00000428313 M0QZ58 72 aa7.96□□□□□ -1.13
C9orf3-206ENST00000428313 FAT2Q9NYQ8 4349 aa7.92□□□□□ -1.14
C9orf3-206ENST00000428313 HYDINQ4G0P3 5121 aa7.87□□□□□ -1.15
C9orf3-206ENST00000428313 KRTAP10-8P60410 259 aa7.87□□□□□ -1.15
C9orf3-206ENST00000428313 PKHD1P08F94 4074 aa7.87□□□□□ -1.15
C9orf3-206ENST00000428313 KRTAP10-4P60372 401 aaPredicted RBP7.83□□□□□ -1.16
C9orf3-206ENST00000428313 APOBP04114 4563 aaKnown RBP7.79□□□□□ -1.16
C9orf3-206ENST00000428313 EPPK1P58107 5090 aaKnown RBP7.76□□□□□ -1.17
C9orf3-206ENST00000428313 LRP1Q07954 4544 aaKnown RBP7.75□□□□□ -1.17
C9orf3-206ENST00000428313 SMR3BP02814 79 aaPredicted RBP7.75□□□□□ -1.17
C9orf3-206ENST00000428313 A0A1B0GVY2 172 aa7.71□□□□□ -1.17
C9orf3-206ENST00000428313 RYR2Q92736 4967 aa7.7□□□□□ -1.18
C9orf3-206ENST00000428313 BIRC6Q9NR09 4857 aa7.68□□□□□ -1.18
C9orf3-206ENST00000428313 SEC61BP60468 96 aaKnown RBP7.67□□□□□ -1.18
C9orf3-206ENST00000428313 TNXBP22105 4242 aa7.66□□□□□ -1.18
C9orf3-206ENST00000428313 FAT3Q8TDW7 4589 aa7.65□□□□□ -1.18
C9orf3-206ENST00000428313 PP632Q6XCG6 107 aa7.65□□□□□ -1.18
C9orf3-206ENST00000428313 MYCBP2O75592 4640 aa7.64□□□□□ -1.19
C9orf3-206ENST00000428313 DYNC1H1Q14204 4646 aaKnown RBP7.6□□□□□ -1.19
C9orf3-206ENST00000428313 HSPG2P98160 4391 aa7.59□□□□□ -1.19
C9orf3-206ENST00000428313 R4GN34 69 aa7.54□□□□□ -1.2
C9orf3-206ENST00000428313 FAT1Q14517 4588 aa7.52□□□□□ -1.21
C9orf3-206ENST00000428313 KRTAP17-1Q9BYP8 105 aa7.52□□□□□ -1.21
C9orf3-206ENST00000428313 SPRR5A0A1B0GTR4 108 aa7.39□□□□□ -1.23
C9orf3-206ENST00000428313 CAMK2N1Q7Z7J9 78 aa7.38□□□□□ -1.23
C9orf3-206ENST00000428313 PCLOQ9Y6V0 5065 aa7.38□□□□□ -1.23
C9orf3-206ENST00000428313 HERC2O95714 4834 aa7.35□□□□□ -1.23
C9orf3-206ENST00000428313 RYR1P21817 5038 aa7.35□□□□□ -1.23
C9orf3-206ENST00000428313 Q5VSD8 79 aa7.32□□□□□ -1.24
C9orf3-206ENST00000428313 PRO2289Q9P1D8 64 aa7.3□□□□□ -1.24
C9orf3-206ENST00000428313 KRTAP23-1A1A580 65 aa7.26□□□□□ -1.25
C9orf3-206ENST00000428313 LORP23490 312 aaPredicted RBP7.26□□□□□ -1.25
C9orf3-206ENST00000428313 KIAA1109Q2LD37 5005 aa7.25□□□□□ -1.25
C9orf3-206ENST00000428313 MT1HL1P0DM35 61 aa7.21□□□□□ -1.25
C9orf3-206ENST00000428313 LPAP08519 4548 aa7.15□□□□□ -1.26
C9orf3-206ENST00000428313 ABCA13Q86UQ4 5058 aa7.13□□□□□ -1.27
C9orf3-206ENST00000428313 TNP1P09430 55 aa7.1□□□□□ -1.27
C9orf3-206ENST00000428313 INE1O15225 51 aa7.1□□□□□ -1.27
C9orf3-206ENST00000428313 LRP2P98164 4655 aa7.02□□□□□ -1.29
C9orf3-206ENST00000428313 KRTAP4-5Q9BYR2 181 aa6.97□□□□□ -1.29
C9orf3-206ENST00000428313 HERC1Q15751 4861 aa6.96□□□□□ -1.3
C9orf3-206ENST00000428313 MUC17Q685J3 4493 aa6.83□□□□□ -1.32
C9orf3-206ENST00000428313 FLGP20930 4061 aaPredicted RBP6.75□□□□□ -1.33
C9orf3-206ENST00000428313 KRTAP19-2Q3LHN2 52 aa6.73□□□□□ -1.33
C9orf3-206ENST00000428313 KRTAP4-1Q9BYQ7 146 aa6.7□□□□□ -1.34
C9orf3-206ENST00000428313 UBR4Q5T4S7 5183 aa6.66□□□□□ -1.34
C9orf3-206ENST00000428313 LCE3AQ5TA76 89 aa6.6□□□□□ -1.35
C9orf3-206ENST00000428313 HMCN2Q8NDA2 5059 aa6.51□□□□□ -1.37
C9orf3-206ENST00000428313 KRTAP8-1Q8IUC2 63 aa6.5□□□□□ -1.37
C9orf3-206ENST00000428313 J3QL48 77 aa6.5□□□□□ -1.37
C9orf3-206ENST00000428313 SPRR2GQ9BYE4 73 aa6.42□□□□□ -1.38
C9orf3-206ENST00000428313 RNF213Q63HN8 5207 aa6.38□□□□□ -1.39
C9orf3-206ENST00000428313 KRTAP10-12P60413 245 aa6.33□□□□□ -1.4
C9orf3-206ENST00000428313 KRTAP19-1Q8IUB9 90 aa6.31□□□□□ -1.4
C9orf3-206ENST00000428313 KRTAP12-3P60328 96 aa6.27□□□□□ -1.41
C9orf3-206ENST00000428313 MUC2Q02817 5179 aa6.27□□□□□ -1.41
C9orf3-206ENST00000428313 KRTAP10-10P60014 251 aa6.24□□□□□ -1.41
C9orf3-206ENST00000428313 LCE2CQ5TA81 110 aa6.19□□□□□ -1.42
C9orf3-206ENST00000428313 KRTAP10-5P60370 271 aa6.13□□□□□ -1.43
C9orf3-206ENST00000428313 KRTAP19-8Q3LI54 63 aa6.04□□□□□ -1.44
C9orf3-206ENST00000428313 MT1XP80297 61 aa6.01□□□□□ -1.45
C9orf3-206ENST00000428313 FAT4Q6V0I7 4981 aa5.99□□□□□ -1.45
C9orf3-206ENST00000428313 MT1HP80294 61 aa5.99□□□□□ -1.45
C9orf3-206ENST00000428313 M0R2T5 61 aa5.98□□□□□ -1.45
C9orf3-206ENST00000428313 MT2AP02795 61 aa5.97□□□□□ -1.45
C9orf3-206ENST00000428313 LCE3CQ5T5A8 94 aa5.96□□□□□ -1.46
C9orf3-206ENST00000428313 MT1FP04733 61 aa5.95□□□□□ -1.46
C9orf3-206ENST00000428313 KRTAP9-2Q9BYQ4 174 aa5.92□□□□□ -1.46
C9orf3-206ENST00000428313 KRTAP9-8Q9BYQ0 159 aa5.91□□□□□ -1.46
C9orf3-206ENST00000428313 KRTAP2-3P0C7H8 128 aa5.89□□□□□ -1.47
C9orf3-206ENST00000428313 KRTAP2-4Q9BYR9 128 aa5.89□□□□□ -1.47
C9orf3-206ENST00000428313 KRTAP2-1Q9BYU5 128 aa5.89□□□□□ -1.47
C9orf3-206ENST00000428313 MT1BP07438 61 aa5.88□□□□□ -1.47
C9orf3-206ENST00000428313 KRTAP10-7P60409 375 aaPredicted RBP5.87□□□□□ -1.47
C9orf3-206ENST00000428313 KRTAP9-6A0A140TA67 174 aa5.82□□□□□ -1.48
C9orf3-206ENST00000428313 KRTAP9-6A8MVA2 160 aa5.76□□□□□ -1.49
C9orf3-206ENST00000428313 KRTAP19-5Q3LI72 72 aa5.76□□□□□ -1.49
C9orf3-206ENST00000428313 LCE2AQ5TA79 106 aaPredicted RBP5.72□□□□□ -1.49
C9orf3-206ENST00000428313 FSIP2Q5CZC0 6907 aa5.7□□□□□ -1.5
C9orf3-206ENST00000428313 KRTAP9-3Q9BYQ3 159 aa5.67□□□□□ -1.5
C9orf3-206ENST00000428313 KRTAP19-4Q3LI73 84 aa5.55□□□□□ -1.52
C9orf3-206ENST00000428313 CRCT1Q9UGL9 99 aa5.51□□□□□ -1.53
C9orf3-206ENST00000428313 LCE2DQ5TA82 110 aaPredicted RBP5.46□□□□□ -1.54
C9orf3-206ENST00000428313 KRTAP4-7Q9BYR0 210 aa5.37□□□□□ -1.55
C9orf3-206ENST00000428313 KRTAP19-7Q3SYF9 63 aa5.35□□□□□ -1.55
C9orf3-206ENST00000428313 LCE2BO14633 110 aa5.33□□□□□ -1.56
C9orf3-206ENST00000428313 KRTAP4-8A0A0G2JLE6 195 aa5.3□□□□□ -1.56
C9orf3-206ENST00000428313 KRTAP4-8Q9BYQ9 185 aa5.3□□□□□ -1.56
C9orf3-206ENST00000428313 KRTAP12-4P60329 112 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 541.7 ms