RNA–Protein interactions for RNA: ENST00000427635.6

HERC4-206, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 2

Gene HERC4, Length 6,391 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-206ENST00000427635 AKAP9Q99996 3911 aa2.56□□□□□ -2
HERC4-206ENST00000427635 CUBNO60494 3623 aa2.54□□□□□ -2
HERC4-206ENST00000427635 ZNF469Q96JG9 3925 aaPredicted RBP2.54□□□□□ -2
HERC4-206ENST00000427635 MT1HL1P0DM35 61 aa2.52□□□□□ -2.01
HERC4-206ENST00000427635 KRTAP12-3P60328 96 aa2.52□□□□□ -2.01
HERC4-206ENST00000427635 MEGF8Q7Z7M0 2845 aa2.49□□□□□ -2.01
HERC4-206ENST00000427635 KRTAP10-5P60370 271 aa2.48□□□□□ -2.01
HERC4-206ENST00000427635 DNAH3Q8TD57 4116 aa2.47□□□□□ -2.01
HERC4-206ENST00000427635 ANK2Q01484 3957 aa2.47□□□□□ -2.01
HERC4-206ENST00000427635 RYR1P21817 5038 aa2.45□□□□□ -2.02
HERC4-206ENST00000427635 LCE3AQ5TA76 89 aa2.45□□□□□ -2.02
HERC4-206ENST00000427635 ALMS1Q8TCU4 4167 aa2.44□□□□□ -2.02
HERC4-206ENST00000427635 ANK3Q12955 4377 aaKnown RBP2.44□□□□□ -2.02
HERC4-206ENST00000427635 KRTAP10-7P60409 375 aaPredicted RBP2.43□□□□□ -2.02
HERC4-206ENST00000427635 TRRAPQ9Y4A5 3859 aa2.42□□□□□ -2.02
HERC4-206ENST00000427635 PCLOQ9Y6V0 5065 aa2.42□□□□□ -2.02
HERC4-206ENST00000427635 MT3P25713 68 aa2.39□□□□□ -2.03
HERC4-206ENST00000427635 SPRR2FQ96RM1 72 aa2.39□□□□□ -2.03
HERC4-206ENST00000427635 HUWE1Q7Z6Z7 4374 aaKnown RBP2.38□□□□□ -2.03
HERC4-206ENST00000427635 HYDINQ4G0P3 5121 aa2.37□□□□□ -2.03
HERC4-206ENST00000427635 RYR3Q15413 4870 aa2.37□□□□□ -2.03
HERC4-206ENST00000427635 BIRC6Q9NR09 4857 aa2.35□□□□□ -2.03
HERC4-206ENST00000427635 KRTAP9-6A0A140TA67 174 aa2.35□□□□□ -2.03
HERC4-206ENST00000427635 SPRR2EP22531 72 aa2.35□□□□□ -2.03
HERC4-206ENST00000427635 SPRR2BP35325 72 aa2.35□□□□□ -2.03
HERC4-206ENST00000427635 SPRR2AP35326 72 aa2.35□□□□□ -2.03
HERC4-206ENST00000427635 LYSTQ99698 3801 aa2.34□□□□□ -2.04
HERC4-206ENST00000427635 DYNC2H1Q8NCM8 4307 aaKnown RBP2.33□□□□□ -2.04
HERC4-206ENST00000427635 KMT2CQ8NEZ4 4911 aaKnown RBP2.33□□□□□ -2.04
HERC4-206ENST00000427635 KRTAP10-4P60372 401 aaPredicted RBP2.33□□□□□ -2.04
HERC4-206ENST00000427635 KRTAP9-2Q9BYQ4 174 aa2.33□□□□□ -2.04
HERC4-206ENST00000427635 RYR2Q92736 4967 aa2.32□□□□□ -2.04
HERC4-206ENST00000427635 DNAH17Q9UFH2 4485 aa2.32□□□□□ -2.04
HERC4-206ENST00000427635 CMYA5Q8N3K9 4069 aa2.31□□□□□ -2.04
HERC4-206ENST00000427635 MT1HP80294 61 aa2.31□□□□□ -2.04
HERC4-206ENST00000427635 CSMD3Q7Z407 3707 aa2.29□□□□□ -2.04
HERC4-206ENST00000427635 SPRR2DP22532 72 aa2.29□□□□□ -2.04
HERC4-206ENST00000427635 FRAS1Q86XX4 4008 aa2.29□□□□□ -2.04
HERC4-206ENST00000427635 PLECQ15149 4684 aaKnown RBP2.25□□□□□ -2.05
HERC4-206ENST00000427635 HERC2O95714 4834 aa2.24□□□□□ -2.05
HERC4-206ENST00000427635 EPPK1P58107 5090 aaKnown RBP2.23□□□□□ -2.05
HERC4-206ENST00000427635 DNAH1Q9P2D7 4330 aa2.22□□□□□ -2.05
HERC4-206ENST00000427635 DNAH11Q96DT5 4516 aa2.22□□□□□ -2.05
HERC4-206ENST00000427635 MT2AP02795 61 aa2.22□□□□□ -2.05
HERC4-206ENST00000427635 KIAA1109Q2LD37 5005 aa2.21□□□□□ -2.06
HERC4-206ENST00000427635 PRKDCP78527 4128 aaKnown RBP2.21□□□□□ -2.06
HERC4-206ENST00000427635 DNAH9Q9NYC9 4486 aa2.21□□□□□ -2.06
HERC4-206ENST00000427635 FAT3Q8TDW7 4589 aa2.2□□□□□ -2.06
HERC4-206ENST00000427635 KRTAP12-4P60329 112 aa2.2□□□□□ -2.06
HERC4-206ENST00000427635 KRTAP19-5Q3LI72 72 aa2.2□□□□□ -2.06
HERC4-206ENST00000427635 DNAH5Q8TE73 4624 aa2.19□□□□□ -2.06
HERC4-206ENST00000427635 DNAH7Q8WXX0 4024 aa2.18□□□□□ -2.06
HERC4-206ENST00000427635 SPRR2GQ9BYE4 73 aa2.17□□□□□ -2.06
HERC4-206ENST00000427635 LCE3CQ5T5A8 94 aa2.16□□□□□ -2.06
HERC4-206ENST00000427635 KRTAP9-7A8MTY7 169 aa2.15□□□□□ -2.06
HERC4-206ENST00000427635 DNAH6Q9C0G6 4158 aa2.15□□□□□ -2.07
HERC4-206ENST00000427635 SPRR5A0A1B0GTR4 108 aa2.15□□□□□ -2.07
HERC4-206ENST00000427635 ABCA13Q86UQ4 5058 aa2.14□□□□□ -2.07
HERC4-206ENST00000427635 KRTAP4-1Q9BYQ7 146 aa2.14□□□□□ -2.07
HERC4-206ENST00000427635 MT1FP04733 61 aa2.14□□□□□ -2.07
HERC4-206ENST00000427635 DNAH10Q8IVF4 4471 aa2.13□□□□□ -2.07
HERC4-206ENST00000427635 DNAH2Q9P225 4427 aa2.12□□□□□ -2.07
HERC4-206ENST00000427635 LCE5AQ5TCM9 118 aa2.12□□□□□ -2.07
HERC4-206ENST00000427635 VPS13DQ5THJ4 4388 aa2.12□□□□□ -2.07
HERC4-206ENST00000427635 HMCN2Q8NDA2 5059 aa2.12□□□□□ -2.07
HERC4-206ENST00000427635 DYNC1H1Q14204 4646 aaKnown RBP2.11□□□□□ -2.07
HERC4-206ENST00000427635 LCE3BQ5TA77 95 aa2.1□□□□□ -2.07
HERC4-206ENST00000427635 PKHD1L1Q86WI1 4243 aa2.09□□□□□ -2.07
HERC4-206ENST00000427635 FAT2Q9NYQ8 4349 aa2.09□□□□□ -2.07
HERC4-206ENST00000427635 VPS13BQ7Z7G8 4022 aa2.09□□□□□ -2.07
HERC4-206ENST00000427635 KMT2AQ03164 3969 aa2.09□□□□□ -2.08
HERC4-206ENST00000427635 FAT1Q14517 4588 aa2.08□□□□□ -2.08
HERC4-206ENST00000427635 HECTD4Q9Y4D8 3996 aa2.08□□□□□ -2.08
HERC4-206ENST00000427635 LRP1BQ9NZR2 4599 aa2.07□□□□□ -2.08
HERC4-206ENST00000427635 FSIP2Q5CZC0 6907 aa2.07□□□□□ -2.08
HERC4-206ENST00000427635 UBR4Q5T4S7 5183 aa2.06□□□□□ -2.08
HERC4-206ENST00000427635 KRTAP20-1Q3LI63 56 aa2.05□□□□□ -2.08
HERC4-206ENST00000427635 PKD1P98161 4303 aa2.05□□□□□ -2.08
HERC4-206ENST00000427635 PKHD1P08F94 4074 aa2.05□□□□□ -2.08
HERC4-206ENST00000427635 SACSQ9NZJ4 4579 aa2.04□□□□□ -2.08
HERC4-206ENST00000427635 KRTAP19-1Q8IUB9 90 aa2.03□□□□□ -2.08
HERC4-206ENST00000427635 KRTAP9-4Q9BYQ2 154 aa2.03□□□□□ -2.08
HERC4-206ENST00000427635 MT1GP13640 62 aa2.03□□□□□ -2.08
HERC4-206ENST00000427635 STARD9Q9P2P6 4700 aa2□□□□□ -2.09
HERC4-206ENST00000427635 HERC1Q15751 4861 aa2□□□□□ -2.09
HERC4-206ENST00000427635 DNAH8Q96JB1 4490 aa1.99□□□□□ -2.09
HERC4-206ENST00000427635 KRTAP19-8Q3LI54 63 aa1.98□□□□□ -2.09
HERC4-206ENST00000427635 LCE1FQ5T754 118 aa1.98□□□□□ -2.09
HERC4-206ENST00000427635 MT4P47944 62 aa1.98□□□□□ -2.09
HERC4-206ENST00000427635 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.98□□□□□ -2.09
HERC4-206ENST00000427635 SYNE2Q8WXH0 6885 aaKnown RBP1.97□□□□□ -2.09
HERC4-206ENST00000427635 LCE3DQ9BYE3 92 aa1.96□□□□□ -2.1
HERC4-206ENST00000427635 KRTAP2-2Q9BYT5 123 aa1.96□□□□□ -2.1
HERC4-206ENST00000427635 LRP2P98164 4655 aa1.95□□□□□ -2.1
HERC4-206ENST00000427635 TNXBP22105 4242 aa1.94□□□□□ -2.1
HERC4-206ENST00000427635 APOBP04114 4563 aaKnown RBP1.93□□□□□ -2.1
HERC4-206ENST00000427635 FAT4Q6V0I7 4981 aa1.93□□□□□ -2.1
HERC4-206ENST00000427635 HSPG2P98160 4391 aa1.92□□□□□ -2.1
HERC4-206ENST00000427635 LCE3EQ5T5B0 92 aa1.91□□□□□ -2.1
HERC4-206ENST00000427635 MT1XP80297 61 aa1.91□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms