RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 CRCT1Q9UGL9 99 aa8.14□□□□□ -1.11
COL7A1-202ENST00000422991 DMAC1Q96GE9 116 aa8.13□□□□□ -1.11
COL7A1-202ENST00000422991 ANAPC13Q9BS18 74 aa8.12□□□□□ -1.11
COL7A1-202ENST00000422991 MT2AP02795 61 aa8.09□□□□□ -1.11
COL7A1-202ENST00000422991 KRTAP3-3Q9BYR6 98 aa8.09□□□□□ -1.11
COL7A1-202ENST00000422991 CSAG1Q6PB30 78 aa8.06□□□□□ -1.12
COL7A1-202ENST00000422991 SPANXA2-OT1Q8N9U9 137 aa8.04□□□□□ -1.12
COL7A1-202ENST00000422991 MT1FP04733 61 aa8.03□□□□□ -1.12
COL7A1-202ENST00000422991 NDUFC1O43677 76 aa8.01□□□□□ -1.13
COL7A1-202ENST00000422991 CYSTM1Q9H1C7 97 aa8□□□□□ -1.13
COL7A1-202ENST00000422991 ACYP2P14621 99 aa7.98□□□□□ -1.13
COL7A1-202ENST00000422991 KRTAP10-10P60014 251 aa7.98□□□□□ -1.13
COL7A1-202ENST00000422991 H7BZZ5 65 aa7.96□□□□□ -1.14
COL7A1-202ENST00000422991 CCDC179H3BU77 68 aa7.95□□□□□ -1.14
COL7A1-202ENST00000422991 KRTAP9-3Q9BYQ3 159 aa7.88□□□□□ -1.15
COL7A1-202ENST00000422991 H0YAA0 97 aa7.84□□□□□ -1.15
COL7A1-202ENST00000422991 CHKB-CPT1BH3BT56 60 aa7.84□□□□□ -1.15
COL7A1-202ENST00000422991 USH2AO75445 5202 aa7.82□□□□□ -1.16
COL7A1-202ENST00000422991 SPTSSBQ8NFR3 76 aa7.8□□□□□ -1.16
COL7A1-202ENST00000422991 COA5Q86WW8 74 aa7.79□□□□□ -1.16
COL7A1-202ENST00000422991 ADM2Q7Z4H4 148 aa7.76□□□□□ -1.17
COL7A1-202ENST00000422991 LCE2BO14633 110 aa7.74□□□□□ -1.17
COL7A1-202ENST00000422991 SSPOA2VEC9 5147 aa7.73□□□□□ -1.17
COL7A1-202ENST00000422991 ATP5EP56381 51 aaPredicted RBP7.72□□□□□ -1.17
COL7A1-202ENST00000422991 KRTAP19-1Q8IUB9 90 aa7.69□□□□□ -1.18
COL7A1-202ENST00000422991 TMEM258P61165 79 aa7.68□□□□□ -1.18
COL7A1-202ENST00000422991 KRTAP3-2Q9BYR7 98 aa7.68□□□□□ -1.18
COL7A1-202ENST00000422991 CRIPTQ9P021 101 aa7.68□□□□□ -1.18
COL7A1-202ENST00000422991 P0C880 135 aa7.66□□□□□ -1.18
COL7A1-202ENST00000422991 SPRR2GQ9BYE4 73 aa7.66□□□□□ -1.18
COL7A1-202ENST00000422991 FCGBPQ9Y6R7 5405 aaPredicted RBP7.58□□□□□ -1.2
COL7A1-202ENST00000422991 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.56□□□□□ -1.2
COL7A1-202ENST00000422991 PCP4P48539 62 aa7.55□□□□□ -1.2
COL7A1-202ENST00000422991 KRTAP19-8Q3LI54 63 aa7.55□□□□□ -1.2
COL7A1-202ENST00000422991 R4GN34 69 aa7.52□□□□□ -1.21
COL7A1-202ENST00000422991 M0QZ58 72 aa7.49□□□□□ -1.21
COL7A1-202ENST00000422991 MT1BP07438 61 aa7.49□□□□□ -1.21
COL7A1-202ENST00000422991 Q5VV11 94 aa7.49□□□□□ -1.21
COL7A1-202ENST00000422991 KRTAP19-6Q3LI70 58 aa7.47□□□□□ -1.21
COL7A1-202ENST00000422991 KRTAP9-7A8MTY7 169 aa7.46□□□□□ -1.22
COL7A1-202ENST00000422991 SEC61GP60059 68 aa7.45□□□□□ -1.22
COL7A1-202ENST00000422991 SERP1Q9Y6X1 66 aa7.44□□□□□ -1.22
COL7A1-202ENST00000422991 A0A1B0GU69 56 aa7.36□□□□□ -1.23
COL7A1-202ENST00000422991 KRTAP13-4Q3LI77 160 aa7.34□□□□□ -1.23
COL7A1-202ENST00000422991 LINC01554Q52M75 96 aa7.34□□□□□ -1.23
COL7A1-202ENST00000422991 MACF1Q9UPN3 7388 aaKnown RBP7.33□□□□□ -1.24
COL7A1-202ENST00000422991 LINC01558Q9Y6Z2 57 aa7.32□□□□□ -1.24
COL7A1-202ENST00000422991 A0A1B0GU33 70 aa7.3□□□□□ -1.24
COL7A1-202ENST00000422991 PRR15LQ9BU68 103 aa7.27□□□□□ -1.25
COL7A1-202ENST00000422991 SYNE2Q8WXH0 6885 aaKnown RBP7.27□□□□□ -1.25
COL7A1-202ENST00000422991 PLAC4Q8WY50 150 aa7.26□□□□□ -1.25
COL7A1-202ENST00000422991 A6NN06 94 aa7.23□□□□□ -1.25
COL7A1-202ENST00000422991 KRTAP10-5P60370 271 aa7.22□□□□□ -1.25
COL7A1-202ENST00000422991 SPATA8Q6RVD6 105 aa7.22□□□□□ -1.25
COL7A1-202ENST00000422991 RPS28P62857 69 aaKnown RBP7.17□□□□□ -1.26
COL7A1-202ENST00000422991 V9GYY9 64 aa7.16□□□□□ -1.26
COL7A1-202ENST00000422991 SMIM26A0A096LP01 95 aa7.15□□□□□ -1.26
COL7A1-202ENST00000422991 Q1T7F1 81 aa7.15□□□□□ -1.26
COL7A1-202ENST00000422991 A0A0D9SG42 100 aa7.14□□□□□ -1.27
COL7A1-202ENST00000422991 MT1XP80297 61 aa7.13□□□□□ -1.27
COL7A1-202ENST00000422991 PRO2289Q9P1D8 64 aa7.1□□□□□ -1.27
COL7A1-202ENST00000422991 KRTAP6-3Q3LI67 103 aa7.09□□□□□ -1.27
COL7A1-202ENST00000422991 A8MU10 97 aa7.05□□□□□ -1.28
COL7A1-202ENST00000422991 PSPHP1O15172 72 aa7.05□□□□□ -1.28
COL7A1-202ENST00000422991 UQCR11O14957 56 aa7.04□□□□□ -1.28
COL7A1-202ENST00000422991 KRTAP12-1P59990 96 aa7.03□□□□□ -1.28
COL7A1-202ENST00000422991 SPINT4Q6UDR6 99 aa6.99□□□□□ -1.29
COL7A1-202ENST00000422991 KRTAP12-2P59991 146 aa6.98□□□□□ -1.29
COL7A1-202ENST00000422991 CAMK2N1Q7Z7J9 78 aa6.98□□□□□ -1.29
COL7A1-202ENST00000422991 MIR22HGQ0VDD5 57 aa6.93□□□□□ -1.3
COL7A1-202ENST00000422991 NEBP20929 6669 aa6.85□□□□□ -1.31
COL7A1-202ENST00000422991 A6NED7 52 aa6.83□□□□□ -1.32
COL7A1-202ENST00000422991 MUC12Q9UKN1 5478 aa6.82□□□□□ -1.32
COL7A1-202ENST00000422991 KRTAP10-7P60409 375 aaPredicted RBP6.8□□□□□ -1.32
COL7A1-202ENST00000422991 KRTAP5-9P26371 169 aa6.78□□□□□ -1.32
COL7A1-202ENST00000422991 KRTAP10-12P60413 245 aa6.77□□□□□ -1.33
COL7A1-202ENST00000422991 KMT2DO14686 5537 aa6.71□□□□□ -1.34
COL7A1-202ENST00000422991 K7ERS5 55 aa6.69□□□□□ -1.34
COL7A1-202ENST00000422991 C10orf95Q9H7T3 257 aa6.67□□□□□ -1.34
COL7A1-202ENST00000422991 KRTAP4-8A0A0G2JLE6 195 aa6.66□□□□□ -1.34
COL7A1-202ENST00000422991 KRTAP4-8Q9BYQ9 185 aa6.66□□□□□ -1.34
COL7A1-202ENST00000422991 MDN1Q9NU22 5596 aa6.66□□□□□ -1.34
COL7A1-202ENST00000422991 CDC42SE1Q9NRR8 79 aa6.64□□□□□ -1.35
COL7A1-202ENST00000422991 KRTAP8-1Q8IUC2 63 aa6.63□□□□□ -1.35
COL7A1-202ENST00000422991 SPRR2FQ96RM1 72 aa6.58□□□□□ -1.36
COL7A1-202ENST00000422991 TNP1P09430 55 aa6.55□□□□□ -1.36
COL7A1-202ENST00000422991 KRTAP20-1Q3LI63 56 aa6.55□□□□□ -1.36
COL7A1-202ENST00000422991 SPRR2EP22531 72 aa6.47□□□□□ -1.37
COL7A1-202ENST00000422991 SPRR2BP35325 72 aa6.47□□□□□ -1.37
COL7A1-202ENST00000422991 SPRR2AP35326 72 aa6.47□□□□□ -1.37
COL7A1-202ENST00000422991 KRTAP25-1Q3LHN0 102 aa6.42□□□□□ -1.38
COL7A1-202ENST00000422991 KRTAP2-3P0C7H8 128 aa6.4□□□□□ -1.38
COL7A1-202ENST00000422991 LCE3AQ5TA76 89 aa6.4□□□□□ -1.38
COL7A1-202ENST00000422991 KRTAP2-4Q9BYR9 128 aa6.4□□□□□ -1.38
COL7A1-202ENST00000422991 LCE1AQ5T7P2 110 aa6.39□□□□□ -1.39
COL7A1-202ENST00000422991 BRK1Q8WUW1 75 aa6.37□□□□□ -1.39
COL7A1-202ENST00000422991 KRTAP19-7Q3SYF9 63 aa6.36□□□□□ -1.39
COL7A1-202ENST00000422991 ROMO1P60602 79 aa6.34□□□□□ -1.39
COL7A1-202ENST00000422991 KRTAP19-5Q3LI72 72 aa6.31□□□□□ -1.4
COL7A1-202ENST00000422991 MT1EP04732 61 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms