RNA–Protein interactions for RNA: ENST00000414700.7

SHMT2-202, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 2,006 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-202ENST00000414700 LRP2P98164 4655 aa8.48□□□□□ -1.05
SHMT2-202ENST00000414700 KRTAP16-1A8MUX0 517 aa8.48□□□□□ -1.05
SHMT2-202ENST00000414700 Q5W150 140 aa8.48□□□□□ -1.05
SHMT2-202ENST00000414700 DMAC1Q96GE9 116 aa8.48□□□□□ -1.05
SHMT2-202ENST00000414700 HMCN2Q8NDA2 5059 aa8.48□□□□□ -1.05
SHMT2-202ENST00000414700 A0A1B0GU69 56 aa8.47□□□□□ -1.05
SHMT2-202ENST00000414700 TPRXLQ17RH7 258 aa8.42□□□□□ -1.06
SHMT2-202ENST00000414700 MIR22HGQ0VDD5 57 aa8.41□□□□□ -1.06
SHMT2-202ENST00000414700 XP32Q5T750 250 aa8.4□□□□□ -1.06
SHMT2-202ENST00000414700 UQCR11O14957 56 aa8.39□□□□□ -1.07
SHMT2-202ENST00000414700 C20orf166-AS1Q96NR2 134 aa8.35□□□□□ -1.07
SHMT2-202ENST00000414700 A8MUU9 505 aa8.34□□□□□ -1.07
SHMT2-202ENST00000414700 H3BS24 57 aa8.34□□□□□ -1.07
SHMT2-202ENST00000414700 IGKV2-30P06310 120 aa8.3□□□□□ -1.08
SHMT2-202ENST00000414700 CSAG1Q6PB30 78 aa8.29□□□□□ -1.08
SHMT2-202ENST00000414700 RPL37P61927 97 aaKnown RBP8.29□□□□□ -1.08
SHMT2-202ENST00000414700 UBR4Q5T4S7 5183 aa8.2□□□□□ -1.1
SHMT2-202ENST00000414700 MUC2Q02817 5179 aa8.18□□□□□ -1.1
SHMT2-202ENST00000414700 MUC17Q685J3 4493 aa8.16□□□□□ -1.1
SHMT2-202ENST00000414700 IGKV2D-30A0A075B6S6 120 aa8.14□□□□□ -1.11
SHMT2-202ENST00000414700 SEC61BP60468 96 aaKnown RBP8.11□□□□□ -1.11
SHMT2-202ENST00000414700 KRTAP4-1Q9BYQ7 146 aa8.08□□□□□ -1.12
SHMT2-202ENST00000414700 RNF213Q63HN8 5207 aa8.07□□□□□ -1.12
SHMT2-202ENST00000414700 KRTAP25-1Q3LHN0 102 aa8.05□□□□□ -1.12
SHMT2-202ENST00000414700 H0YAA0 97 aa7.99□□□□□ -1.13
SHMT2-202ENST00000414700 ROMO1P60602 79 aa7.96□□□□□ -1.13
SHMT2-202ENST00000414700 A0A1B0GU33 70 aa7.88□□□□□ -1.15
SHMT2-202ENST00000414700 H1FX-AS1Q4G0G2 97 aa7.86□□□□□ -1.15
SHMT2-202ENST00000414700 FAT4Q6V0I7 4981 aa7.82□□□□□ -1.16
SHMT2-202ENST00000414700 KRTAP3-1Q9BYR8 98 aa7.82□□□□□ -1.16
SHMT2-202ENST00000414700 KRTAP19-2Q3LHN2 52 aa7.81□□□□□ -1.16
SHMT2-202ENST00000414700 K7ERS5 55 aa7.79□□□□□ -1.16
SHMT2-202ENST00000414700 COX6B2Q6YFQ2 88 aa7.79□□□□□ -1.16
SHMT2-202ENST00000414700 FLGP20930 4061 aaPredicted RBP7.73□□□□□ -1.17
SHMT2-202ENST00000414700 P0C880 135 aa7.72□□□□□ -1.17
SHMT2-202ENST00000414700 LCE2CQ5TA81 110 aa7.71□□□□□ -1.18
SHMT2-202ENST00000414700 CRIPTQ9P021 101 aa7.71□□□□□ -1.18
SHMT2-202ENST00000414700 S4R3F8 94 aa7.57□□□□□ -1.2
SHMT2-202ENST00000414700 MT1HP80294 61 aa7.56□□□□□ -1.2
SHMT2-202ENST00000414700 KRTAP3-3Q9BYR6 98 aa7.56□□□□□ -1.2
SHMT2-202ENST00000414700 SPINT4Q6UDR6 99 aa7.55□□□□□ -1.2
SHMT2-202ENST00000414700 KRTAP10-6P60371 365 aaPredicted RBP7.45□□□□□ -1.22
SHMT2-202ENST00000414700 M0R2T5 61 aa7.44□□□□□ -1.22
SHMT2-202ENST00000414700 KRTAP15-1Q3LI76 137 aa7.44□□□□□ -1.22
SHMT2-202ENST00000414700 KRTAP13-4Q3LI77 160 aa7.43□□□□□ -1.22
SHMT2-202ENST00000414700 A0A0D9SG42 100 aa7.41□□□□□ -1.22
SHMT2-202ENST00000414700 LCE2AQ5TA79 106 aaPredicted RBP7.41□□□□□ -1.22
SHMT2-202ENST00000414700 NDUFAF8A1L188 74 aa7.39□□□□□ -1.23
SHMT2-202ENST00000414700 C10orf95Q9H7T3 257 aa7.39□□□□□ -1.23
SHMT2-202ENST00000414700 KRTAP3-2Q9BYR7 98 aa7.36□□□□□ -1.23
SHMT2-202ENST00000414700 LORP23490 312 aaPredicted RBP7.27□□□□□ -1.25
SHMT2-202ENST00000414700 KRTAP9-8Q9BYQ0 159 aa7.25□□□□□ -1.25
SHMT2-202ENST00000414700 KRTAP12-2P59991 146 aa7.23□□□□□ -1.25
SHMT2-202ENST00000414700 MT2AP02795 61 aa7.2□□□□□ -1.26
SHMT2-202ENST00000414700 MT1FP04733 61 aa7.17□□□□□ -1.26
SHMT2-202ENST00000414700 KRTAP12-1P59990 96 aa7.17□□□□□ -1.26
SHMT2-202ENST00000414700 KRTAP10-10P60014 251 aa7.12□□□□□ -1.27
SHMT2-202ENST00000414700 M0QZ58 72 aa7.03□□□□□ -1.28
SHMT2-202ENST00000414700 KRTAP9-3Q9BYQ3 159 aa6.99□□□□□ -1.29
SHMT2-202ENST00000414700 R4GN34 69 aa6.97□□□□□ -1.29
SHMT2-202ENST00000414700 KRTAP19-1Q8IUB9 90 aa6.96□□□□□ -1.29
SHMT2-202ENST00000414700 A0A0A0MQY5 61 aa6.94□□□□□ -1.3
SHMT2-202ENST00000414700 SPRR2GQ9BYE4 73 aa6.92□□□□□ -1.3
SHMT2-202ENST00000414700 PLAC4Q8WY50 150 aa6.88□□□□□ -1.31
SHMT2-202ENST00000414700 LUZP6Q538Z0 58 aa6.87□□□□□ -1.31
SHMT2-202ENST00000414700 LCE2BO14633 110 aa6.86□□□□□ -1.31
SHMT2-202ENST00000414700 USH2AO75445 5202 aa6.82□□□□□ -1.32
SHMT2-202ENST00000414700 FSIP2Q5CZC0 6907 aa6.81□□□□□ -1.32
SHMT2-202ENST00000414700 KRTAP19-8Q3LI54 63 aa6.76□□□□□ -1.33
SHMT2-202ENST00000414700 LCE2DQ5TA82 110 aaPredicted RBP6.74□□□□□ -1.33
SHMT2-202ENST00000414700 MT1BP07438 61 aa6.74□□□□□ -1.33
SHMT2-202ENST00000414700 PP632Q6XCG6 107 aa6.67□□□□□ -1.34
SHMT2-202ENST00000414700 KRTAP9-2Q9BYQ4 174 aa6.67□□□□□ -1.34
SHMT2-202ENST00000414700 SSPOA2VEC9 5147 aa6.63□□□□□ -1.35
SHMT2-202ENST00000414700 CAMK2N1Q7Z7J9 78 aa6.49□□□□□ -1.37
SHMT2-202ENST00000414700 MT1XP80297 61 aa6.47□□□□□ -1.37
SHMT2-202ENST00000414700 KRTAP10-5P60370 271 aa6.45□□□□□ -1.38
SHMT2-202ENST00000414700 KRTAP19-6Q3LI70 58 aa6.43□□□□□ -1.38
SHMT2-202ENST00000414700 SPRR5A0A1B0GTR4 108 aa6.38□□□□□ -1.39
SHMT2-202ENST00000414700 FCGBPQ9Y6R7 5405 aaPredicted RBP6.38□□□□□ -1.39
SHMT2-202ENST00000414700 CRCT1Q9UGL9 99 aa6.37□□□□□ -1.39
SHMT2-202ENST00000414700 KRTAP23-1A1A580 65 aa6.35□□□□□ -1.39
SHMT2-202ENST00000414700 PRO2289Q9P1D8 64 aa6.33□□□□□ -1.4
SHMT2-202ENST00000414700 TNP1P09430 55 aa6.28□□□□□ -1.4
SHMT2-202ENST00000414700 KMT2DO14686 5537 aa6.22□□□□□ -1.41
SHMT2-202ENST00000414700 KRTAP10-7P60409 375 aaPredicted RBP6.22□□□□□ -1.41
SHMT2-202ENST00000414700 KRTAP9-6A0A140TA67 174 aa6.2□□□□□ -1.42
SHMT2-202ENST00000414700 MACF1Q9UPN3 7388 aaKnown RBP6.17□□□□□ -1.42
SHMT2-202ENST00000414700 KRTAP10-12P60413 245 aa6.11□□□□□ -1.43
SHMT2-202ENST00000414700 KRTAP4-8A0A0G2JLE6 195 aa6.06□□□□□ -1.44
SHMT2-202ENST00000414700 KRTAP4-8Q9BYQ9 185 aa6.06□□□□□ -1.44
SHMT2-202ENST00000414700 SYNE2Q8WXH0 6885 aaKnown RBP6.03□□□□□ -1.44
SHMT2-202ENST00000414700 INE1O15225 51 aa6□□□□□ -1.45
SHMT2-202ENST00000414700 LCE3AQ5TA76 89 aa5.98□□□□□ -1.45
SHMT2-202ENST00000414700 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.92□□□□□ -1.46
SHMT2-202ENST00000414700 KRTAP8-1Q8IUC2 63 aa5.87□□□□□ -1.47
SHMT2-202ENST00000414700 KRTAP19-5Q3LI72 72 aa5.79□□□□□ -1.48
SHMT2-202ENST00000414700 MUC12Q9UKN1 5478 aa5.79□□□□□ -1.48
SHMT2-202ENST00000414700 KRTAP19-7Q3SYF9 63 aa5.78□□□□□ -1.48
SHMT2-202ENST00000414700 SPRR2FQ96RM1 72 aa5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms