RNA–Protein interactions for RNA: ENST00000399455.2

USP47-203, Transcript of ubiquitin specific peptidase 47, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP47, Length 7,396 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-203ENST00000399455 DNAH7Q8WXX0 4024 aa3.3□□□□□ -1.88
USP47-203ENST00000399455 DNAH11Q96DT5 4516 aa3.29□□□□□ -1.88
USP47-203ENST00000399455 FAT2Q9NYQ8 4349 aa3.28□□□□□ -1.88
USP47-203ENST00000399455 CSMD1Q96PZ7 3565 aa3.28□□□□□ -1.88
USP47-203ENST00000399455 DCHS1Q96JQ0 3298 aa3.27□□□□□ -1.89
USP47-203ENST00000399455 ANK2Q01484 3957 aa3.27□□□□□ -1.89
USP47-203ENST00000399455 INE1O15225 51 aa3.27□□□□□ -1.89
USP47-203ENST00000399455 MT2AP02795 61 aa3.26□□□□□ -1.89
USP47-203ENST00000399455 SPRR2FQ96RM1 72 aa3.26□□□□□ -1.89
USP47-203ENST00000399455 KRTAP10-7P60409 375 aaPredicted RBP3.25□□□□□ -1.89
USP47-203ENST00000399455 CSMD2Q7Z408 3487 aa3.24□□□□□ -1.89
USP47-203ENST00000399455 KRTAP4-1Q9BYQ7 146 aa3.24□□□□□ -1.89
USP47-203ENST00000399455 DYNC1H1Q14204 4646 aaKnown RBP3.22□□□□□ -1.89
USP47-203ENST00000399455 DYNC2H1Q8NCM8 4307 aaKnown RBP3.22□□□□□ -1.89
USP47-203ENST00000399455 CUBNO60494 3623 aa3.22□□□□□ -1.89
USP47-203ENST00000399455 VPS13CQ709C8 3753 aa3.22□□□□□ -1.89
USP47-203ENST00000399455 DNAH17Q9UFH2 4485 aa3.21□□□□□ -1.89
USP47-203ENST00000399455 MEGF8Q7Z7M0 2845 aa3.21□□□□□ -1.89
USP47-203ENST00000399455 VPS13DQ5THJ4 4388 aa3.21□□□□□ -1.89
USP47-203ENST00000399455 SPRR2GQ9BYE4 73 aa3.21□□□□□ -1.9
USP47-203ENST00000399455 CMYA5Q8N3K9 4069 aa3.19□□□□□ -1.9
USP47-203ENST00000399455 SPRR2EP22531 72 aa3.19□□□□□ -1.9
USP47-203ENST00000399455 SPRR2BP35325 72 aa3.19□□□□□ -1.9
USP47-203ENST00000399455 SPRR2AP35326 72 aa3.19□□□□□ -1.9
USP47-203ENST00000399455 DNAH5Q8TE73 4624 aa3.18□□□□□ -1.9
USP47-203ENST00000399455 COL7A1Q02388 2944 aa3.17□□□□□ -1.9
USP47-203ENST00000399455 MT1FP04733 61 aa3.16□□□□□ -1.9
USP47-203ENST00000399455 KRTAP10-5P60370 271 aa3.16□□□□□ -1.9
USP47-203ENST00000399455 PRKDCP78527 4128 aaKnown RBP3.15□□□□□ -1.9
USP47-203ENST00000399455 SVEP1Q4LDE5 3571 aa3.13□□□□□ -1.91
USP47-203ENST00000399455 KRTAP19-4Q3LI73 84 aa3.13□□□□□ -1.91
USP47-203ENST00000399455 DNAH8Q96JB1 4490 aa3.11□□□□□ -1.91
USP47-203ENST00000399455 SPRR2DP22532 72 aa3.11□□□□□ -1.91
USP47-203ENST00000399455 PLECQ15149 4684 aaKnown RBP3.11□□□□□ -1.91
USP47-203ENST00000399455 PKHD1L1Q86WI1 4243 aa3.08□□□□□ -1.92
USP47-203ENST00000399455 ZNF469Q96JG9 3925 aaPredicted RBP3.08□□□□□ -1.92
USP47-203ENST00000399455 LRP1BQ9NZR2 4599 aa3.06□□□□□ -1.92
USP47-203ENST00000399455 KRTAP19-5Q3LI72 72 aa3.06□□□□□ -1.92
USP47-203ENST00000399455 VPS13BQ7Z7G8 4022 aa3.05□□□□□ -1.92
USP47-203ENST00000399455 LCE2BO14633 110 aa3.04□□□□□ -1.92
USP47-203ENST00000399455 LYSTQ99698 3801 aa3.03□□□□□ -1.92
USP47-203ENST00000399455 STARD9Q9P2P6 4700 aa3.03□□□□□ -1.92
USP47-203ENST00000399455 SACSQ9NZJ4 4579 aa3.02□□□□□ -1.93
USP47-203ENST00000399455 KRTAP17-1Q9BYP8 105 aa3.02□□□□□ -1.93
USP47-203ENST00000399455 FRAS1Q86XX4 4008 aa3□□□□□ -1.93
USP47-203ENST00000399455 KMT2AQ03164 3969 aa2.99□□□□□ -1.93
USP47-203ENST00000399455 LCE3CQ5T5A8 94 aa2.98□□□□□ -1.93
USP47-203ENST00000399455 KRTAP19-8Q3LI54 63 aa2.98□□□□□ -1.93
USP47-203ENST00000399455 SRRM2Q9UQ35 2752 aaKnown RBP2.97□□□□□ -1.93
USP47-203ENST00000399455 FAT1Q14517 4588 aa2.96□□□□□ -1.94
USP47-203ENST00000399455 KRTAP19-1Q8IUB9 90 aa2.96□□□□□ -1.94
USP47-203ENST00000399455 CSMD3Q7Z407 3707 aa2.95□□□□□ -1.94
USP47-203ENST00000399455 KRTAP12-4P60329 112 aa2.95□□□□□ -1.94
USP47-203ENST00000399455 FAT3Q8TDW7 4589 aa2.94□□□□□ -1.94
USP47-203ENST00000399455 HERC1Q15751 4861 aa2.94□□□□□ -1.94
USP47-203ENST00000399455 HSPG2P98160 4391 aa2.93□□□□□ -1.94
USP47-203ENST00000399455 HECTD4Q9Y4D8 3996 aa2.9□□□□□ -1.95
USP47-203ENST00000399455 APOBP04114 4563 aaKnown RBP2.89□□□□□ -1.95
USP47-203ENST00000399455 MYCBP2O75592 4640 aa2.89□□□□□ -1.95
USP47-203ENST00000399455 KRTAP9-2Q9BYQ4 174 aa2.88□□□□□ -1.95
USP47-203ENST00000399455 DNHD1Q96M86 4753 aa2.88□□□□□ -1.95
USP47-203ENST00000399455 KRTAP9-8Q9BYQ0 159 aa2.86□□□□□ -1.95
USP47-203ENST00000399455 RYR3Q15413 4870 aa2.85□□□□□ -1.95
USP47-203ENST00000399455 MUC17Q685J3 4493 aa2.85□□□□□ -1.95
USP47-203ENST00000399455 LCE2CQ5TA81 110 aa2.84□□□□□ -1.95
USP47-203ENST00000399455 LRP1Q07954 4544 aaKnown RBP2.84□□□□□ -1.95
USP47-203ENST00000399455 KRTAP9-6A0A140TA67 174 aa2.84□□□□□ -1.96
USP47-203ENST00000399455 MT1GP13640 62 aa2.84□□□□□ -1.96
USP47-203ENST00000399455 KRTAP9-3Q9BYQ3 159 aa2.84□□□□□ -1.96
USP47-203ENST00000399455 MT1XP80297 61 aa2.83□□□□□ -1.96
USP47-203ENST00000399455 LCE2DQ5TA82 110 aaPredicted RBP2.83□□□□□ -1.96
USP47-203ENST00000399455 MT1BP07438 61 aa2.81□□□□□ -1.96
USP47-203ENST00000399455 PKHD1P08F94 4074 aa2.79□□□□□ -1.96
USP47-203ENST00000399455 RYR1P21817 5038 aa2.78□□□□□ -1.96
USP47-203ENST00000399455 LCE3BQ5TA77 95 aa2.77□□□□□ -1.97
USP47-203ENST00000399455 RYR2Q92736 4967 aa2.76□□□□□ -1.97
USP47-203ENST00000399455 HYDINQ4G0P3 5121 aa2.75□□□□□ -1.97
USP47-203ENST00000399455 BIRC6Q9NR09 4857 aa2.75□□□□□ -1.97
USP47-203ENST00000399455 PKD1P98161 4303 aa2.74□□□□□ -1.97
USP47-203ENST00000399455 KRTAP19-3Q7Z4W3 81 aa2.72□□□□□ -1.97
USP47-203ENST00000399455 KRTAP19-6Q3LI70 58 aa2.72□□□□□ -1.97
USP47-203ENST00000399455 KRTAP20-1Q3LI63 56 aa2.72□□□□□ -1.97
USP47-203ENST00000399455 TNXBP22105 4242 aa2.71□□□□□ -1.98
USP47-203ENST00000399455 KRTAP4-8A0A0G2JLE6 195 aa2.67□□□□□ -1.98
USP47-203ENST00000399455 KRTAP4-8Q9BYQ9 185 aa2.67□□□□□ -1.98
USP47-203ENST00000399455 MT4P47944 62 aa2.66□□□□□ -1.98
USP47-203ENST00000399455 KRTAP9-7A8MTY7 169 aa2.61□□□□□ -1.99
USP47-203ENST00000399455 HERC2O95714 4834 aa2.61□□□□□ -1.99
USP47-203ENST00000399455 FLGP20930 4061 aaPredicted RBP2.6□□□□□ -1.99
USP47-203ENST00000399455 MT1EP04732 61 aa2.6□□□□□ -1.99
USP47-203ENST00000399455 MT1LQ93083 61 aa2.6□□□□□ -1.99
USP47-203ENST00000399455 LCE3DQ9BYE3 92 aa2.59□□□□□ -1.99
USP47-203ENST00000399455 SPRR5A0A1B0GTR4 108 aa2.58□□□□□ -2
USP47-203ENST00000399455 KRTAP6-3Q3LI67 103 aa2.57□□□□□ -2
USP47-203ENST00000399455 KRTAP19-2Q3LHN2 52 aa2.57□□□□□ -2
USP47-203ENST00000399455 MT3P25713 68 aa2.57□□□□□ -2
USP47-203ENST00000399455 LCE2AQ5TA79 106 aaPredicted RBP2.56□□□□□ -2
USP47-203ENST00000399455 KRTAP2-3P0C7H8 128 aa2.56□□□□□ -2
USP47-203ENST00000399455 KRTAP2-4Q9BYR9 128 aa2.56□□□□□ -2
USP47-203ENST00000399455 MT1MQ8N339 61 aa2.54□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 1097.9 ms