RNA–Protein interactions for RNA: ENST00000396355.5

NDE1-202, Transcript of nudE neurodevelopment protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NDE1, Length 3,936 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1-202ENST00000396355 KRTAP10-1P60331 282 aa4.75□□□□□ -1.65
NDE1-202ENST00000396355 SEC61BP60468 96 aaKnown RBP4.74□□□□□ -1.65
NDE1-202ENST00000396355 HERC2O95714 4834 aa4.73□□□□□ -1.65
NDE1-202ENST00000396355 PKD1P98161 4303 aa4.72□□□□□ -1.65
NDE1-202ENST00000396355 LRP1BQ9NZR2 4599 aa4.72□□□□□ -1.65
NDE1-202ENST00000396355 FAT2Q9NYQ8 4349 aa4.71□□□□□ -1.66
NDE1-202ENST00000396355 COX6B2Q6YFQ2 88 aa4.71□□□□□ -1.66
NDE1-202ENST00000396355 PCLOQ9Y6V0 5065 aa4.7□□□□□ -1.66
NDE1-202ENST00000396355 VPS13BQ7Z7G8 4022 aa4.68□□□□□ -1.66
NDE1-202ENST00000396355 PKHD1P08F94 4074 aa4.66□□□□□ -1.66
NDE1-202ENST00000396355 TPRXLQ17RH7 258 aa4.66□□□□□ -1.66
NDE1-202ENST00000396355 ABCA13Q86UQ4 5058 aa4.61□□□□□ -1.67
NDE1-202ENST00000396355 PLAC4Q8WY50 150 aa4.57□□□□□ -1.68
NDE1-202ENST00000396355 KRTAP13-3Q3SY46 172 aa4.57□□□□□ -1.68
NDE1-202ENST00000396355 DYNC1H1Q14204 4646 aaKnown RBP4.56□□□□□ -1.68
NDE1-202ENST00000396355 S4R3F8 94 aa4.55□□□□□ -1.68
NDE1-202ENST00000396355 HERC1Q15751 4861 aa4.54□□□□□ -1.68
NDE1-202ENST00000396355 KRTAP15-1Q3LI76 137 aa4.54□□□□□ -1.68
NDE1-202ENST00000396355 KRTAP13-2Q52LG2 175 aa4.53□□□□□ -1.68
NDE1-202ENST00000396355 KRTAP10-8P60410 259 aa4.52□□□□□ -1.69
NDE1-202ENST00000396355 CAMK2N1Q7Z7J9 78 aa4.5□□□□□ -1.69
NDE1-202ENST00000396355 FAT1Q14517 4588 aa4.49□□□□□ -1.69
NDE1-202ENST00000396355 KRTAP1-4P0C5Y4 121 aa4.48□□□□□ -1.69
NDE1-202ENST00000396355 APOBP04114 4563 aaKnown RBP4.48□□□□□ -1.69
NDE1-202ENST00000396355 HSPG2P98160 4391 aa4.45□□□□□ -1.7
NDE1-202ENST00000396355 PKHD1L1Q86WI1 4243 aa4.44□□□□□ -1.7
NDE1-202ENST00000396355 MYCBP2O75592 4640 aa4.44□□□□□ -1.7
NDE1-202ENST00000396355 M0QZ58 72 aa4.43□□□□□ -1.7
NDE1-202ENST00000396355 R4GN34 69 aa4.43□□□□□ -1.7
NDE1-202ENST00000396355 UBR4Q5T4S7 5183 aa4.39□□□□□ -1.71
NDE1-202ENST00000396355 KRTAP12-2P59991 146 aa4.37□□□□□ -1.71
NDE1-202ENST00000396355 KRTAP13-4Q3LI77 160 aa4.35□□□□□ -1.71
NDE1-202ENST00000396355 LRP1Q07954 4544 aaKnown RBP4.34□□□□□ -1.72
NDE1-202ENST00000396355 TNXBP22105 4242 aa4.3□□□□□ -1.72
NDE1-202ENST00000396355 MT1HL1P0DM35 61 aa4.3□□□□□ -1.72
NDE1-202ENST00000396355 KRTAP10-4P60372 401 aaPredicted RBP4.29□□□□□ -1.72
NDE1-202ENST00000396355 FAT3Q8TDW7 4589 aa4.28□□□□□ -1.72
NDE1-202ENST00000396355 KRTAP3-1Q9BYR8 98 aa4.28□□□□□ -1.72
NDE1-202ENST00000396355 LRP2P98164 4655 aa4.25□□□□□ -1.73
NDE1-202ENST00000396355 RNF213Q63HN8 5207 aa4.25□□□□□ -1.73
NDE1-202ENST00000396355 RPS29P62273 56 aaKnown RBP4.25□□□□□ -1.73
NDE1-202ENST00000396355 KRTAP12-1P59990 96 aa4.22□□□□□ -1.73
NDE1-202ENST00000396355 LPAP08519 4548 aa4.2□□□□□ -1.74
NDE1-202ENST00000396355 KRTAP10-6P60371 365 aaPredicted RBP4.19□□□□□ -1.74
NDE1-202ENST00000396355 HMCN2Q8NDA2 5059 aa4.17□□□□□ -1.74
NDE1-202ENST00000396355 M0R2T5 61 aa4.15□□□□□ -1.75
NDE1-202ENST00000396355 XP32Q5T750 250 aa4.15□□□□□ -1.75
NDE1-202ENST00000396355 KRTAP3-3Q9BYR6 98 aa4.1□□□□□ -1.75
NDE1-202ENST00000396355 KRTAP3-2Q9BYR7 98 aa4.1□□□□□ -1.75
NDE1-202ENST00000396355 KRTAP9-2Q9BYQ4 174 aa4.1□□□□□ -1.75
NDE1-202ENST00000396355 PRO2289Q9P1D8 64 aa4.08□□□□□ -1.76
NDE1-202ENST00000396355 PP632Q6XCG6 107 aa4.07□□□□□ -1.76
NDE1-202ENST00000396355 FSIP2Q5CZC0 6907 aa4.06□□□□□ -1.76
NDE1-202ENST00000396355 LCE2DQ5TA82 110 aaPredicted RBP4.06□□□□□ -1.76
NDE1-202ENST00000396355 TNP1P09430 55 aa4.05□□□□□ -1.76
NDE1-202ENST00000396355 KRTAP9-6A0A140TA67 174 aa4.03□□□□□ -1.76
NDE1-202ENST00000396355 MUC2Q02817 5179 aa3.94□□□□□ -1.78
NDE1-202ENST00000396355 MUC17Q685J3 4493 aa3.89□□□□□ -1.79
NDE1-202ENST00000396355 CRCT1Q9UGL9 99 aa3.89□□□□□ -1.79
NDE1-202ENST00000396355 INE1O15225 51 aa3.87□□□□□ -1.79
NDE1-202ENST00000396355 FAT4Q6V0I7 4981 aa3.86□□□□□ -1.79
NDE1-202ENST00000396355 LCE2AQ5TA79 106 aaPredicted RBP3.83□□□□□ -1.8
NDE1-202ENST00000396355 KRTAP4-1Q9BYQ7 146 aa3.76□□□□□ -1.81
NDE1-202ENST00000396355 LORP23490 312 aaPredicted RBP3.73□□□□□ -1.81
NDE1-202ENST00000396355 MT1HP80294 61 aa3.7□□□□□ -1.82
NDE1-202ENST00000396355 KRTAP19-2Q3LHN2 52 aa3.68□□□□□ -1.82
NDE1-202ENST00000396355 FLGP20930 4061 aaPredicted RBP3.68□□□□□ -1.82
NDE1-202ENST00000396355 KRTAP10-10P60014 251 aa3.68□□□□□ -1.82
NDE1-202ENST00000396355 KRTAP9-7A8MTY7 169 aa3.64□□□□□ -1.83
NDE1-202ENST00000396355 LCE2CQ5TA81 110 aa3.59□□□□□ -1.84
NDE1-202ENST00000396355 LCE2BO14633 110 aa3.57□□□□□ -1.84
NDE1-202ENST00000396355 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.55□□□□□ -1.84
NDE1-202ENST00000396355 KRTAP23-1A1A580 65 aa3.54□□□□□ -1.84
NDE1-202ENST00000396355 LCE3AQ5TA76 89 aa3.52□□□□□ -1.85
NDE1-202ENST00000396355 KRTAP19-1Q8IUB9 90 aa3.45□□□□□ -1.86
NDE1-202ENST00000396355 MT2AP02795 61 aa3.43□□□□□ -1.86
NDE1-202ENST00000396355 USH2AO75445 5202 aa3.43□□□□□ -1.86
NDE1-202ENST00000396355 SYNE2Q8WXH0 6885 aaKnown RBP3.42□□□□□ -1.86
NDE1-202ENST00000396355 MT1FP04733 61 aa3.39□□□□□ -1.87
NDE1-202ENST00000396355 KRTAP12-3P60328 96 aa3.39□□□□□ -1.87
NDE1-202ENST00000396355 KRTAP9-8Q9BYQ0 159 aa3.39□□□□□ -1.87
NDE1-202ENST00000396355 SPRR5A0A1B0GTR4 108 aa3.38□□□□□ -1.87
NDE1-202ENST00000396355 FCGBPQ9Y6R7 5405 aaPredicted RBP3.36□□□□□ -1.87
NDE1-202ENST00000396355 SSPOA2VEC9 5147 aa3.36□□□□□ -1.87
NDE1-202ENST00000396355 MACF1Q9UPN3 7388 aaKnown RBP3.35□□□□□ -1.87
NDE1-202ENST00000396355 SYNE1Q8NF91 8797 aaKnown RBP3.34□□□□□ -1.88
NDE1-202ENST00000396355 SPRR2GQ9BYE4 73 aa3.33□□□□□ -1.88
NDE1-202ENST00000396355 OBSCNQ5VST9 7968 aa3.31□□□□□ -1.88
NDE1-202ENST00000396355 KRTAP9-3Q9BYQ3 159 aa3.3□□□□□ -1.88
NDE1-202ENST00000396355 KRTAP10-12P60413 245 aa3.28□□□□□ -1.88
NDE1-202ENST00000396355 KRTAP10-5P60370 271 aa3.25□□□□□ -1.89
NDE1-202ENST00000396355 KRTAP6-3Q3LI67 103 aa3.24□□□□□ -1.89
NDE1-202ENST00000396355 KRTAP19-6Q3LI70 58 aa3.23□□□□□ -1.89
NDE1-202ENST00000396355 KRTAP20-1Q3LI63 56 aa3.22□□□□□ -1.89
NDE1-202ENST00000396355 KMT2DO14686 5537 aa3.2□□□□□ -1.9
NDE1-202ENST00000396355 MT1BP07438 61 aa3.18□□□□□ -1.9
NDE1-202ENST00000396355 KRTAP19-8Q3LI54 63 aa3.17□□□□□ -1.9
NDE1-202ENST00000396355 MT1XP80297 61 aa3.16□□□□□ -1.9
NDE1-202ENST00000396355 NEBP20929 6669 aa3.14□□□□□ -1.91
NDE1-202ENST00000396355 SPRR2FQ96RM1 72 aa3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms