RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 EPPK1P58107 5090 aaKnown RBP7.86□□□□□ -1.15
VPS9D1-201ENST00000389386 TPRXLQ17RH7 258 aa7.83□□□□□ -1.16
VPS9D1-201ENST00000389386 KRTAP15-1Q3LI76 137 aa7.81□□□□□ -1.16
VPS9D1-201ENST00000389386 KIAA1109Q2LD37 5005 aa7.81□□□□□ -1.16
VPS9D1-201ENST00000389386 RPL37P61927 97 aaKnown RBP7.76□□□□□ -1.17
VPS9D1-201ENST00000389386 HSPG2P98160 4391 aa7.75□□□□□ -1.17
VPS9D1-201ENST00000389386 RYR1P21817 5038 aa7.72□□□□□ -1.17
VPS9D1-201ENST00000389386 KRTAP10-4P60372 401 aaPredicted RBP7.7□□□□□ -1.18
VPS9D1-201ENST00000389386 KRTAP17-1Q9BYP8 105 aa7.7□□□□□ -1.18
VPS9D1-201ENST00000389386 C10orf95Q9H7T3 257 aa7.7□□□□□ -1.18
VPS9D1-201ENST00000389386 KRTAP13-4Q3LI77 160 aa7.67□□□□□ -1.18
VPS9D1-201ENST00000389386 LRP1Q07954 4544 aaKnown RBP7.67□□□□□ -1.18
VPS9D1-201ENST00000389386 KRTAP10-6P60371 365 aaPredicted RBP7.66□□□□□ -1.18
VPS9D1-201ENST00000389386 C9orf92A6NGG3 77 aa7.65□□□□□ -1.18
VPS9D1-201ENST00000389386 A0A0D9SG42 100 aa7.65□□□□□ -1.19
VPS9D1-201ENST00000389386 Q5VSD8 79 aa7.64□□□□□ -1.19
VPS9D1-201ENST00000389386 DMBT1Q9UGM3 2413 aaPredicted RBP7.63□□□□□ -1.19
VPS9D1-201ENST00000389386 RPS29P62273 56 aaKnown RBP7.63□□□□□ -1.19
VPS9D1-201ENST00000389386 MYCBP2O75592 4640 aa7.6□□□□□ -1.19
VPS9D1-201ENST00000389386 LUZP6Q538Z0 58 aa7.59□□□□□ -1.19
VPS9D1-201ENST00000389386 KRTAP3-2Q9BYR7 98 aa7.57□□□□□ -1.2
VPS9D1-201ENST00000389386 PKHD1L1Q86WI1 4243 aa7.56□□□□□ -1.2
VPS9D1-201ENST00000389386 KRTAP3-3Q9BYR6 98 aa7.54□□□□□ -1.2
VPS9D1-201ENST00000389386 S4R3F8 94 aa7.51□□□□□ -1.21
VPS9D1-201ENST00000389386 KRTAP4-5Q9BYR2 181 aa7.49□□□□□ -1.21
VPS9D1-201ENST00000389386 KRTAP12-2P59991 146 aa7.46□□□□□ -1.21
VPS9D1-201ENST00000389386 FAT3Q8TDW7 4589 aa7.45□□□□□ -1.22
VPS9D1-201ENST00000389386 TNXBP22105 4242 aa7.45□□□□□ -1.22
VPS9D1-201ENST00000389386 ABCA13Q86UQ4 5058 aa7.42□□□□□ -1.22
VPS9D1-201ENST00000389386 XP32Q5T750 250 aa7.4□□□□□ -1.22
VPS9D1-201ENST00000389386 BIRC6Q9NR09 4857 aa7.4□□□□□ -1.22
VPS9D1-201ENST00000389386 KRTAP12-1P59990 96 aa7.37□□□□□ -1.23
VPS9D1-201ENST00000389386 KRTAP10-8P60410 259 aa7.36□□□□□ -1.23
VPS9D1-201ENST00000389386 HERC2O95714 4834 aa7.34□□□□□ -1.23
VPS9D1-201ENST00000389386 MT1HL1P0DM35 61 aa7.32□□□□□ -1.24
VPS9D1-201ENST00000389386 PCLOQ9Y6V0 5065 aa7.21□□□□□ -1.25
VPS9D1-201ENST00000389386 SEC61BP60468 96 aaKnown RBP7.18□□□□□ -1.26
VPS9D1-201ENST00000389386 J3QL48 77 aa7.15□□□□□ -1.26
VPS9D1-201ENST00000389386 M0QZ58 72 aa7.15□□□□□ -1.26
VPS9D1-201ENST00000389386 LPAP08519 4548 aa7.15□□□□□ -1.27
VPS9D1-201ENST00000389386 PLAC4Q8WY50 150 aa7.14□□□□□ -1.27
VPS9D1-201ENST00000389386 LRP2P98164 4655 aa7.13□□□□□ -1.27
VPS9D1-201ENST00000389386 HERC1Q15751 4861 aa7.09□□□□□ -1.27
VPS9D1-201ENST00000389386 MUC2Q02817 5179 aa6.84□□□□□ -1.31
VPS9D1-201ENST00000389386 R4GN34 69 aa6.84□□□□□ -1.31
VPS9D1-201ENST00000389386 HMCN2Q8NDA2 5059 aa6.84□□□□□ -1.32
VPS9D1-201ENST00000389386 PP632Q6XCG6 107 aa6.78□□□□□ -1.32
VPS9D1-201ENST00000389386 CAMK2N1Q7Z7J9 78 aa6.72□□□□□ -1.33
VPS9D1-201ENST00000389386 KRTAP4-1Q9BYQ7 146 aa6.71□□□□□ -1.33
VPS9D1-201ENST00000389386 LORP23490 312 aaPredicted RBP6.7□□□□□ -1.34
VPS9D1-201ENST00000389386 UBR4Q5T4S7 5183 aa6.69□□□□□ -1.34
VPS9D1-201ENST00000389386 RNF213Q63HN8 5207 aa6.69□□□□□ -1.34
VPS9D1-201ENST00000389386 MUC17Q685J3 4493 aa6.67□□□□□ -1.34
VPS9D1-201ENST00000389386 SPRR5A0A1B0GTR4 108 aa6.58□□□□□ -1.36
VPS9D1-201ENST00000389386 PRO2289Q9P1D8 64 aa6.58□□□□□ -1.36
VPS9D1-201ENST00000389386 FAT4Q6V0I7 4981 aa6.52□□□□□ -1.37
VPS9D1-201ENST00000389386 KRTAP19-2Q3LHN2 52 aa6.47□□□□□ -1.37
VPS9D1-201ENST00000389386 KRTAP23-1A1A580 65 aa6.43□□□□□ -1.38
VPS9D1-201ENST00000389386 TNP1P09430 55 aa6.4□□□□□ -1.39
VPS9D1-201ENST00000389386 FLGP20930 4061 aaPredicted RBP6.35□□□□□ -1.39
VPS9D1-201ENST00000389386 LCE2CQ5TA81 110 aa6.29□□□□□ -1.4
VPS9D1-201ENST00000389386 INE1O15225 51 aa6.28□□□□□ -1.4
VPS9D1-201ENST00000389386 M0R2T5 61 aa6.2□□□□□ -1.42
VPS9D1-201ENST00000389386 MT1HP80294 61 aa6.17□□□□□ -1.42
VPS9D1-201ENST00000389386 LCE3AQ5TA76 89 aa6.01□□□□□ -1.45
VPS9D1-201ENST00000389386 KRTAP9-8Q9BYQ0 159 aa5.94□□□□□ -1.46
VPS9D1-201ENST00000389386 MT2AP02795 61 aa5.93□□□□□ -1.46
VPS9D1-201ENST00000389386 KRTAP10-10P60014 251 aa5.93□□□□□ -1.46
VPS9D1-201ENST00000389386 MT1FP04733 61 aa5.92□□□□□ -1.46
VPS9D1-201ENST00000389386 KRTAP19-1Q8IUB9 90 aa5.92□□□□□ -1.46
VPS9D1-201ENST00000389386 LCE2AQ5TA79 106 aaPredicted RBP5.88□□□□□ -1.47
VPS9D1-201ENST00000389386 KRTAP8-1Q8IUC2 63 aa5.87□□□□□ -1.47
VPS9D1-201ENST00000389386 SPRR2GQ9BYE4 73 aa5.86□□□□□ -1.47
VPS9D1-201ENST00000389386 USH2AO75445 5202 aa5.73□□□□□ -1.49
VPS9D1-201ENST00000389386 KRTAP10-12P60413 245 aa5.73□□□□□ -1.49
VPS9D1-201ENST00000389386 KRTAP9-3Q9BYQ3 159 aa5.71□□□□□ -1.5
VPS9D1-201ENST00000389386 KRTAP12-3P60328 96 aa5.69□□□□□ -1.5
VPS9D1-201ENST00000389386 MT1BP07438 61 aa5.65□□□□□ -1.51
VPS9D1-201ENST00000389386 KRTAP19-8Q3LI54 63 aa5.62□□□□□ -1.51
VPS9D1-201ENST00000389386 FSIP2Q5CZC0 6907 aa5.62□□□□□ -1.51
VPS9D1-201ENST00000389386 LCE2BO14633 110 aa5.61□□□□□ -1.51
VPS9D1-201ENST00000389386 KRTAP10-5P60370 271 aa5.56□□□□□ -1.52
VPS9D1-201ENST00000389386 MT1XP80297 61 aa5.56□□□□□ -1.52
VPS9D1-201ENST00000389386 KRTAP10-7P60409 375 aaPredicted RBP5.45□□□□□ -1.54
VPS9D1-201ENST00000389386 SSPOA2VEC9 5147 aa5.43□□□□□ -1.54
VPS9D1-201ENST00000389386 KMT2DO14686 5537 aa5.41□□□□□ -1.54
VPS9D1-201ENST00000389386 LCE3CQ5T5A8 94 aa5.4□□□□□ -1.55
VPS9D1-201ENST00000389386 KRTAP9-6A8MVA2 160 aa5.3□□□□□ -1.56
VPS9D1-201ENST00000389386 KRTAP2-3P0C7H8 128 aa5.29□□□□□ -1.56
VPS9D1-201ENST00000389386 KRTAP19-5Q3LI72 72 aa5.29□□□□□ -1.56
VPS9D1-201ENST00000389386 KRTAP2-4Q9BYR9 128 aa5.29□□□□□ -1.56
VPS9D1-201ENST00000389386 KRTAP2-1Q9BYU5 128 aa5.29□□□□□ -1.56
VPS9D1-201ENST00000389386 LCE2DQ5TA82 110 aaPredicted RBP5.24□□□□□ -1.57
VPS9D1-201ENST00000389386 KRTAP4-8A0A0G2JLE6 195 aa5.22□□□□□ -1.57
VPS9D1-201ENST00000389386 KRTAP4-8Q9BYQ9 185 aa5.22□□□□□ -1.57
VPS9D1-201ENST00000389386 KRTAP9-2Q9BYQ4 174 aa5.19□□□□□ -1.58
VPS9D1-201ENST00000389386 FCGBPQ9Y6R7 5405 aaPredicted RBP5.17□□□□□ -1.58
VPS9D1-201ENST00000389386 KRTAP19-6Q3LI70 58 aa5.14□□□□□ -1.59
VPS9D1-201ENST00000389386 KRTAP4-7Q9BYR0 210 aa5.02□□□□□ -1.61
VPS9D1-201ENST00000389386 CRCT1Q9UGL9 99 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 117.9 ms