RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 KRTAP3-1Q9BYR8 98 aa7.42□□□□□ -1.22
SDC1-202ENST00000381150 P0C880 135 aa7.4□□□□□ -1.22
SDC1-202ENST00000381150 C10orf95Q9H7T3 257 aa7.4□□□□□ -1.22
SDC1-202ENST00000381150 MYCBP2O75592 4640 aa7.35□□□□□ -1.23
SDC1-202ENST00000381150 RPL37P61927 97 aaKnown RBP7.32□□□□□ -1.24
SDC1-202ENST00000381150 NDUFAF8A1L188 74 aa7.31□□□□□ -1.24
SDC1-202ENST00000381150 C20orf166-AS1Q96NR2 134 aa7.27□□□□□ -1.25
SDC1-202ENST00000381150 TNXBP22105 4242 aa7.26□□□□□ -1.25
SDC1-202ENST00000381150 TPRXLQ17RH7 258 aa7.25□□□□□ -1.25
SDC1-202ENST00000381150 LRP1Q07954 4544 aaKnown RBP7.24□□□□□ -1.25
SDC1-202ENST00000381150 HSPG2P98160 4391 aa7.24□□□□□ -1.25
SDC1-202ENST00000381150 KRTAP13-4Q3LI77 160 aa7.23□□□□□ -1.25
SDC1-202ENST00000381150 RYR3Q15413 4870 aa7.21□□□□□ -1.25
SDC1-202ENST00000381150 FAT3Q8TDW7 4589 aa7.21□□□□□ -1.26
SDC1-202ENST00000381150 KRTAP10-8P60410 259 aa7.18□□□□□ -1.26
SDC1-202ENST00000381150 KRTAP17-1Q9BYP8 105 aa7.16□□□□□ -1.26
SDC1-202ENST00000381150 RYR1P21817 5038 aa7.14□□□□□ -1.27
SDC1-202ENST00000381150 KRTAP10-6P60371 365 aaPredicted RBP7.12□□□□□ -1.27
SDC1-202ENST00000381150 Q5VSD8 79 aa7.11□□□□□ -1.27
SDC1-202ENST00000381150 S4R3F8 94 aa7.09□□□□□ -1.27
SDC1-202ENST00000381150 KRTAP12-2P59991 146 aa7.06□□□□□ -1.28
SDC1-202ENST00000381150 KIAA1109Q2LD37 5005 aa7.04□□□□□ -1.28
SDC1-202ENST00000381150 KRTAP3-3Q9BYR6 98 aa7.03□□□□□ -1.28
SDC1-202ENST00000381150 KRTAP3-2Q9BYR7 98 aa7□□□□□ -1.29
SDC1-202ENST00000381150 MT1HL1P0DM35 61 aa6.99□□□□□ -1.29
SDC1-202ENST00000381150 KRTAP15-1Q3LI76 137 aa6.97□□□□□ -1.29
SDC1-202ENST00000381150 XP32Q5T750 250 aa6.96□□□□□ -1.3
SDC1-202ENST00000381150 EPPK1P58107 5090 aaKnown RBP6.94□□□□□ -1.3
SDC1-202ENST00000381150 A0A0A0MQY5 61 aa6.93□□□□□ -1.3
SDC1-202ENST00000381150 LPAP08519 4548 aa6.91□□□□□ -1.3
SDC1-202ENST00000381150 KRTAP12-1P59990 96 aa6.89□□□□□ -1.31
SDC1-202ENST00000381150 M0QZ58 72 aa6.81□□□□□ -1.32
SDC1-202ENST00000381150 LRP2P98164 4655 aa6.8□□□□□ -1.32
SDC1-202ENST00000381150 ABCA13Q86UQ4 5058 aa6.78□□□□□ -1.32
SDC1-202ENST00000381150 KRTAP4-5Q9BYR2 181 aa6.77□□□□□ -1.33
SDC1-202ENST00000381150 R4GN34 69 aa6.75□□□□□ -1.33
SDC1-202ENST00000381150 LUZP6Q538Z0 58 aa6.68□□□□□ -1.34
SDC1-202ENST00000381150 PLAC4Q8WY50 150 aa6.68□□□□□ -1.34
SDC1-202ENST00000381150 CAMK2N1Q7Z7J9 78 aa6.56□□□□□ -1.36
SDC1-202ENST00000381150 MUC17Q685J3 4493 aa6.55□□□□□ -1.36
SDC1-202ENST00000381150 HERC2O95714 4834 aa6.52□□□□□ -1.37
SDC1-202ENST00000381150 LORP23490 312 aaPredicted RBP6.5□□□□□ -1.37
SDC1-202ENST00000381150 MUC2Q02817 5179 aa6.49□□□□□ -1.37
SDC1-202ENST00000381150 KRTAP4-1Q9BYQ7 146 aa6.48□□□□□ -1.37
SDC1-202ENST00000381150 SEC61BP60468 96 aaKnown RBP6.44□□□□□ -1.38
SDC1-202ENST00000381150 J3QL48 77 aa6.41□□□□□ -1.38
SDC1-202ENST00000381150 KRTAP19-2Q3LHN2 52 aa6.4□□□□□ -1.38
SDC1-202ENST00000381150 BIRC6Q9NR09 4857 aa6.4□□□□□ -1.39
SDC1-202ENST00000381150 PCLOQ9Y6V0 5065 aa6.25□□□□□ -1.41
SDC1-202ENST00000381150 PP632Q6XCG6 107 aa6.23□□□□□ -1.41
SDC1-202ENST00000381150 HERC1Q15751 4861 aa6.22□□□□□ -1.41
SDC1-202ENST00000381150 FLGP20930 4061 aaPredicted RBP6.2□□□□□ -1.42
SDC1-202ENST00000381150 HMCN2Q8NDA2 5059 aa6.19□□□□□ -1.42
SDC1-202ENST00000381150 TNP1P09430 55 aa6.15□□□□□ -1.42
SDC1-202ENST00000381150 FAT4Q6V0I7 4981 aa6.14□□□□□ -1.43
SDC1-202ENST00000381150 LCE2CQ5TA81 110 aa6.05□□□□□ -1.44
SDC1-202ENST00000381150 RNF213Q63HN8 5207 aa5.95□□□□□ -1.46
SDC1-202ENST00000381150 UBR4Q5T4S7 5183 aa5.89□□□□□ -1.47
SDC1-202ENST00000381150 M0R2T5 61 aa5.85□□□□□ -1.47
SDC1-202ENST00000381150 MT1HP80294 61 aa5.84□□□□□ -1.47
SDC1-202ENST00000381150 SPRR2GQ9BYE4 73 aa5.8□□□□□ -1.48
SDC1-202ENST00000381150 KRTAP19-1Q8IUB9 90 aa5.8□□□□□ -1.48
SDC1-202ENST00000381150 LCE3AQ5TA76 89 aa5.78□□□□□ -1.48
SDC1-202ENST00000381150 SPRR5A0A1B0GTR4 108 aa5.76□□□□□ -1.49
SDC1-202ENST00000381150 KRTAP9-8Q9BYQ0 159 aa5.73□□□□□ -1.49
SDC1-202ENST00000381150 MT2AP02795 61 aa5.72□□□□□ -1.49
SDC1-202ENST00000381150 MT1FP04733 61 aa5.71□□□□□ -1.5
SDC1-202ENST00000381150 PRO2289Q9P1D8 64 aa5.68□□□□□ -1.5
SDC1-202ENST00000381150 KRTAP23-1A1A580 65 aa5.65□□□□□ -1.5
SDC1-202ENST00000381150 KRTAP10-10P60014 251 aa5.63□□□□□ -1.51
SDC1-202ENST00000381150 KRTAP19-8Q3LI54 63 aa5.58□□□□□ -1.52
SDC1-202ENST00000381150 KMT2DO14686 5537 aa5.53□□□□□ -1.52
SDC1-202ENST00000381150 MT1BP07438 61 aa5.51□□□□□ -1.53
SDC1-202ENST00000381150 USH2AO75445 5202 aa5.51□□□□□ -1.53
SDC1-202ENST00000381150 INE1O15225 51 aa5.49□□□□□ -1.53
SDC1-202ENST00000381150 KRTAP9-3Q9BYQ3 159 aa5.49□□□□□ -1.53
SDC1-202ENST00000381150 KRTAP12-3P60328 96 aa5.46□□□□□ -1.54
SDC1-202ENST00000381150 KRTAP10-5P60370 271 aa5.44□□□□□ -1.54
SDC1-202ENST00000381150 MT1XP80297 61 aa5.43□□□□□ -1.54
SDC1-202ENST00000381150 KRTAP10-12P60413 245 aa5.39□□□□□ -1.55
SDC1-202ENST00000381150 KRTAP8-1Q8IUC2 63 aa5.38□□□□□ -1.55
SDC1-202ENST00000381150 LCE2AQ5TA79 106 aaPredicted RBP5.31□□□□□ -1.56
SDC1-202ENST00000381150 LCE2BO14633 110 aa5.29□□□□□ -1.56
SDC1-202ENST00000381150 KRTAP10-7P60409 375 aaPredicted RBP5.28□□□□□ -1.56
SDC1-202ENST00000381150 FSIP2Q5CZC0 6907 aa5.24□□□□□ -1.57
SDC1-202ENST00000381150 KRTAP19-5Q3LI72 72 aa5.12□□□□□ -1.59
SDC1-202ENST00000381150 LCE3CQ5T5A8 94 aa5.07□□□□□ -1.6
SDC1-202ENST00000381150 KRTAP4-7Q9BYR0 210 aa5.06□□□□□ -1.6
SDC1-202ENST00000381150 KRTAP4-8A0A0G2JLE6 195 aa5.05□□□□□ -1.6
SDC1-202ENST00000381150 KRTAP4-8Q9BYQ9 185 aa5.05□□□□□ -1.6
SDC1-202ENST00000381150 DSTQ03001 7570 aaKnown RBP5□□□□□ -1.61
SDC1-202ENST00000381150 OBSCNQ5VST9 7968 aa4.98□□□□□ -1.61
SDC1-202ENST00000381150 KRTAP9-6A8MVA2 160 aa4.96□□□□□ -1.62
SDC1-202ENST00000381150 FCGBPQ9Y6R7 5405 aaPredicted RBP4.92□□□□□ -1.62
SDC1-202ENST00000381150 SSPOA2VEC9 5147 aa4.9□□□□□ -1.63
SDC1-202ENST00000381150 SYNE1Q8NF91 8797 aaKnown RBP4.88□□□□□ -1.63
SDC1-202ENST00000381150 CRCT1Q9UGL9 99 aa4.87□□□□□ -1.63
SDC1-202ENST00000381150 KRTAP19-7Q3SYF9 63 aa4.86□□□□□ -1.63
SDC1-202ENST00000381150 KRTAP19-6Q3LI70 58 aa4.78□□□□□ -1.64
SDC1-202ENST00000381150 MUC12Q9UKN1 5478 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms