RNA–Protein interactions for RNA: ENST00000379446.9

NEDD9-202, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NEDD9, Length 4,536 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-202ENST00000379446 PRKDCP78527 4128 aaKnown RBP3.37□□□□□ -1.87
NEDD9-202ENST00000379446 KMT2AQ03164 3969 aa3.37□□□□□ -1.87
NEDD9-202ENST00000379446 VPS13DQ5THJ4 4388 aa3.36□□□□□ -1.87
NEDD9-202ENST00000379446 FRAS1Q86XX4 4008 aa3.36□□□□□ -1.87
NEDD9-202ENST00000379446 KRTAP23-1A1A580 65 aa3.35□□□□□ -1.87
NEDD9-202ENST00000379446 DNAH17Q9UFH2 4485 aa3.33□□□□□ -1.88
NEDD9-202ENST00000379446 KRTAP17-1Q9BYP8 105 aa3.31□□□□□ -1.88
NEDD9-202ENST00000379446 LRP1BQ9NZR2 4599 aa3.3□□□□□ -1.88
NEDD9-202ENST00000379446 DNAH2Q9P225 4427 aa3.3□□□□□ -1.88
NEDD9-202ENST00000379446 LORP23490 312 aaPredicted RBP3.3□□□□□ -1.88
NEDD9-202ENST00000379446 HECTD4Q9Y4D8 3996 aa3.3□□□□□ -1.88
NEDD9-202ENST00000379446 TNP1P09430 55 aa3.3□□□□□ -1.88
NEDD9-202ENST00000379446 DNAH6Q9C0G6 4158 aa3.28□□□□□ -1.88
NEDD9-202ENST00000379446 DYNC2H1Q8NCM8 4307 aaKnown RBP3.27□□□□□ -1.89
NEDD9-202ENST00000379446 LCE2DQ5TA82 110 aaPredicted RBP3.27□□□□□ -1.89
NEDD9-202ENST00000379446 KRTAP3-1Q9BYR8 98 aa3.27□□□□□ -1.89
NEDD9-202ENST00000379446 DNAH5Q8TE73 4624 aa3.25□□□□□ -1.89
NEDD9-202ENST00000379446 FAT1Q14517 4588 aa3.22□□□□□ -1.89
NEDD9-202ENST00000379446 RYR1P21817 5038 aa3.21□□□□□ -1.9
NEDD9-202ENST00000379446 VPS13BQ7Z7G8 4022 aa3.21□□□□□ -1.9
NEDD9-202ENST00000379446 ALMS1Q8TCU4 4167 aa3.2□□□□□ -1.9
NEDD9-202ENST00000379446 KRTAP13-4Q3LI77 160 aa3.19□□□□□ -1.9
NEDD9-202ENST00000379446 HYDINQ4G0P3 5121 aa3.17□□□□□ -1.9
NEDD9-202ENST00000379446 DYNC1H1Q14204 4646 aaKnown RBP3.17□□□□□ -1.9
NEDD9-202ENST00000379446 KIAA1109Q2LD37 5005 aa3.16□□□□□ -1.9
NEDD9-202ENST00000379446 PKHD1P08F94 4074 aa3.16□□□□□ -1.9
NEDD9-202ENST00000379446 KRTAP12-2P59991 146 aa3.16□□□□□ -1.9
NEDD9-202ENST00000379446 KRTAP10-4P60372 401 aaPredicted RBP3.16□□□□□ -1.9
NEDD9-202ENST00000379446 KRTAP15-1Q3LI76 137 aa3.13□□□□□ -1.91
NEDD9-202ENST00000379446 KRTAP10-6P60371 365 aaPredicted RBP3.11□□□□□ -1.91
NEDD9-202ENST00000379446 MYCBP2O75592 4640 aa3.11□□□□□ -1.91
NEDD9-202ENST00000379446 SACSQ9NZJ4 4579 aa3.11□□□□□ -1.91
NEDD9-202ENST00000379446 BIRC6Q9NR09 4857 aa3.1□□□□□ -1.91
NEDD9-202ENST00000379446 PCLOQ9Y6V0 5065 aa3.1□□□□□ -1.91
NEDD9-202ENST00000379446 FAT2Q9NYQ8 4349 aa3.1□□□□□ -1.91
NEDD9-202ENST00000379446 PKD1P98161 4303 aa3.08□□□□□ -1.92
NEDD9-202ENST00000379446 RYR3Q15413 4870 aa3.08□□□□□ -1.92
NEDD9-202ENST00000379446 LRP1Q07954 4544 aaKnown RBP3.07□□□□□ -1.92
NEDD9-202ENST00000379446 KRTAP12-1P59990 96 aa3.06□□□□□ -1.92
NEDD9-202ENST00000379446 CRCT1Q9UGL9 99 aa3.06□□□□□ -1.92
NEDD9-202ENST00000379446 APOBP04114 4563 aaKnown RBP3.06□□□□□ -1.92
NEDD9-202ENST00000379446 PKHD1L1Q86WI1 4243 aa3.05□□□□□ -1.92
NEDD9-202ENST00000379446 PP632Q6XCG6 107 aa3.04□□□□□ -1.92
NEDD9-202ENST00000379446 HERC2O95714 4834 aa3.03□□□□□ -1.92
NEDD9-202ENST00000379446 FAT3Q8TDW7 4589 aa3.02□□□□□ -1.93
NEDD9-202ENST00000379446 KRTAP8-1Q8IUC2 63 aa3.01□□□□□ -1.93
NEDD9-202ENST00000379446 EPPK1P58107 5090 aaKnown RBP3.01□□□□□ -1.93
NEDD9-202ENST00000379446 FSIP2Q5CZC0 6907 aa2.99□□□□□ -1.93
NEDD9-202ENST00000379446 MT1HP80294 61 aa2.96□□□□□ -1.93
NEDD9-202ENST00000379446 KMT2CQ8NEZ4 4911 aaKnown RBP2.96□□□□□ -1.94
NEDD9-202ENST00000379446 RYR2Q92736 4967 aa2.96□□□□□ -1.94
NEDD9-202ENST00000379446 KRTAP19-4Q3LI73 84 aa2.96□□□□□ -1.94
NEDD9-202ENST00000379446 KRTAP9-2Q9BYQ4 174 aa2.95□□□□□ -1.94
NEDD9-202ENST00000379446 LCE2BO14633 110 aa2.94□□□□□ -1.94
NEDD9-202ENST00000379446 SPRR2FQ96RM1 72 aa2.94□□□□□ -1.94
NEDD9-202ENST00000379446 HSPG2P98160 4391 aa2.93□□□□□ -1.94
NEDD9-202ENST00000379446 KRTAP9-6A0A140TA67 174 aa2.92□□□□□ -1.94
NEDD9-202ENST00000379446 UBR4Q5T4S7 5183 aa2.92□□□□□ -1.94
NEDD9-202ENST00000379446 LRP2P98164 4655 aa2.91□□□□□ -1.94
NEDD9-202ENST00000379446 KRTAP4-1Q9BYQ7 146 aa2.9□□□□□ -1.94
NEDD9-202ENST00000379446 LCE2CQ5TA81 110 aa2.89□□□□□ -1.95
NEDD9-202ENST00000379446 KRTAP10-12P60413 245 aa2.86□□□□□ -1.95
NEDD9-202ENST00000379446 TNXBP22105 4242 aa2.86□□□□□ -1.95
NEDD9-202ENST00000379446 MT2AP02795 61 aa2.85□□□□□ -1.95
NEDD9-202ENST00000379446 LPAP08519 4548 aa2.84□□□□□ -1.95
NEDD9-202ENST00000379446 SPRR2EP22531 72 aa2.82□□□□□ -1.96
NEDD9-202ENST00000379446 SPRR2BP35325 72 aa2.82□□□□□ -1.96
NEDD9-202ENST00000379446 SPRR2AP35326 72 aa2.82□□□□□ -1.96
NEDD9-202ENST00000379446 MT1FP04733 61 aa2.78□□□□□ -1.96
NEDD9-202ENST00000379446 ABCA13Q86UQ4 5058 aa2.77□□□□□ -1.97
NEDD9-202ENST00000379446 HERC1Q15751 4861 aa2.74□□□□□ -1.97
NEDD9-202ENST00000379446 SPRR2DP22532 72 aa2.73□□□□□ -1.97
NEDD9-202ENST00000379446 SYNE1Q8NF91 8797 aaKnown RBP2.72□□□□□ -1.97
NEDD9-202ENST00000379446 KRTAP10-7P60409 375 aaPredicted RBP2.72□□□□□ -1.97
NEDD9-202ENST00000379446 KRTAP19-1Q8IUB9 90 aa2.72□□□□□ -1.97
NEDD9-202ENST00000379446 KRTAP9-7A8MTY7 169 aa2.72□□□□□ -1.97
NEDD9-202ENST00000379446 SYNE2Q8WXH0 6885 aaKnown RBP2.7□□□□□ -1.98
NEDD9-202ENST00000379446 LCE2AQ5TA79 106 aaPredicted RBP2.67□□□□□ -1.98
NEDD9-202ENST00000379446 MACF1Q9UPN3 7388 aaKnown RBP2.67□□□□□ -1.98
NEDD9-202ENST00000379446 KRTAP12-3P60328 96 aa2.67□□□□□ -1.98
NEDD9-202ENST00000379446 SPRR5A0A1B0GTR4 108 aa2.66□□□□□ -1.98
NEDD9-202ENST00000379446 MUC2Q02817 5179 aa2.66□□□□□ -1.98
NEDD9-202ENST00000379446 RNF213Q63HN8 5207 aa2.62□□□□□ -1.99
NEDD9-202ENST00000379446 KRTAP19-2Q3LHN2 52 aa2.61□□□□□ -1.99
NEDD9-202ENST00000379446 LCE3AQ5TA76 89 aa2.59□□□□□ -1.99
NEDD9-202ENST00000379446 MUC17Q685J3 4493 aa2.59□□□□□ -2
NEDD9-202ENST00000379446 KRTAP20-1Q3LI63 56 aa2.58□□□□□ -2
NEDD9-202ENST00000379446 INE1O15225 51 aa2.56□□□□□ -2
NEDD9-202ENST00000379446 SPRR2GQ9BYE4 73 aa2.56□□□□□ -2
NEDD9-202ENST00000379446 FAT4Q6V0I7 4981 aa2.56□□□□□ -2
NEDD9-202ENST00000379446 FLGP20930 4061 aaPredicted RBP2.55□□□□□ -2
NEDD9-202ENST00000379446 KRTAP9-8Q9BYQ0 159 aa2.53□□□□□ -2
NEDD9-202ENST00000379446 GPR98Q8WXG9 6306 aa2.53□□□□□ -2
NEDD9-202ENST00000379446 MT3P25713 68 aa2.52□□□□□ -2.01
NEDD9-202ENST00000379446 KRTAP10-5P60370 271 aa2.52□□□□□ -2.01
NEDD9-202ENST00000379446 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.51□□□□□ -2.01
NEDD9-202ENST00000379446 DSTQ03001 7570 aaKnown RBP2.51□□□□□ -2.01
NEDD9-202ENST00000379446 KRTAP12-4P60329 112 aa2.5□□□□□ -2.01
NEDD9-202ENST00000379446 KRTAP9-3Q9BYQ3 159 aa2.49□□□□□ -2.01
NEDD9-202ENST00000379446 MT4P47944 62 aa2.48□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms