RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 KRTAP10-4P60372 401 aaPredicted RBP6.48□□□□□ -1.37
NPHP4-203ENST00000378169 MT1HL1P0DM35 61 aa6.47□□□□□ -1.37
NPHP4-203ENST00000378169 KRTAP10-10P60014 251 aa6.47□□□□□ -1.37
NPHP4-203ENST00000378169 LRP1BQ9NZR2 4599 aa6.46□□□□□ -1.38
NPHP4-203ENST00000378169 DNAH8Q96JB1 4490 aa6.44□□□□□ -1.38
NPHP4-203ENST00000378169 A0A0A0MQY5 61 aa6.44□□□□□ -1.38
NPHP4-203ENST00000378169 DNAH17Q9UFH2 4485 aa6.43□□□□□ -1.38
NPHP4-203ENST00000378169 KRTAP12-2P59991 146 aa6.42□□□□□ -1.38
NPHP4-203ENST00000378169 DNAH2Q9P225 4427 aa6.4□□□□□ -1.38
NPHP4-203ENST00000378169 KRTAP4-5Q9BYR2 181 aa6.4□□□□□ -1.38
NPHP4-203ENST00000378169 HYDINQ4G0P3 5121 aa6.39□□□□□ -1.39
NPHP4-203ENST00000378169 KRTAP13-4Q3LI77 160 aa6.36□□□□□ -1.39
NPHP4-203ENST00000378169 KRTAP10-6P60371 365 aaPredicted RBP6.36□□□□□ -1.39
NPHP4-203ENST00000378169 DYNC1H1Q14204 4646 aaKnown RBP6.35□□□□□ -1.39
NPHP4-203ENST00000378169 DYNC2H1Q8NCM8 4307 aaKnown RBP6.34□□□□□ -1.39
NPHP4-203ENST00000378169 FRAS1Q86XX4 4008 aa6.34□□□□□ -1.39
NPHP4-203ENST00000378169 KRTAP12-1P59990 96 aa6.33□□□□□ -1.4
NPHP4-203ENST00000378169 DNAH6Q9C0G6 4158 aa6.31□□□□□ -1.4
NPHP4-203ENST00000378169 PP632Q6XCG6 107 aa6.3□□□□□ -1.4
NPHP4-203ENST00000378169 KMT2CQ8NEZ4 4911 aaKnown RBP6.26□□□□□ -1.41
NPHP4-203ENST00000378169 MYCBP2O75592 4640 aa6.26□□□□□ -1.41
NPHP4-203ENST00000378169 ALMS1Q8TCU4 4167 aa6.26□□□□□ -1.41
NPHP4-203ENST00000378169 SACSQ9NZJ4 4579 aa6.25□□□□□ -1.41
NPHP4-203ENST00000378169 VPS13BQ7Z7G8 4022 aa6.25□□□□□ -1.41
NPHP4-203ENST00000378169 KRTAP3-3Q9BYR6 98 aa6.25□□□□□ -1.41
NPHP4-203ENST00000378169 HECTD4Q9Y4D8 3996 aa6.23□□□□□ -1.41
NPHP4-203ENST00000378169 PKHD1P08F94 4074 aa6.21□□□□□ -1.41
NPHP4-203ENST00000378169 KIAA1109Q2LD37 5005 aa6.2□□□□□ -1.42
NPHP4-203ENST00000378169 KRTAP3-2Q9BYR7 98 aa6.19□□□□□ -1.42
NPHP4-203ENST00000378169 RYR1P21817 5038 aa6.18□□□□□ -1.42
NPHP4-203ENST00000378169 RYR2Q92736 4967 aa6.13□□□□□ -1.43
NPHP4-203ENST00000378169 LRP1Q07954 4544 aaKnown RBP6.13□□□□□ -1.43
NPHP4-203ENST00000378169 FAT2Q9NYQ8 4349 aa6.1□□□□□ -1.43
NPHP4-203ENST00000378169 FAT3Q8TDW7 4589 aa6.1□□□□□ -1.43
NPHP4-203ENST00000378169 PRO2289Q9P1D8 64 aa6.09□□□□□ -1.44
NPHP4-203ENST00000378169 RYR3Q15413 4870 aa6.08□□□□□ -1.44
NPHP4-203ENST00000378169 APOBP04114 4563 aaKnown RBP6.08□□□□□ -1.44
NPHP4-203ENST00000378169 PKD1P98161 4303 aa6.04□□□□□ -1.44
NPHP4-203ENST00000378169 KRTAP17-1Q9BYP8 105 aa6.01□□□□□ -1.45
NPHP4-203ENST00000378169 LORP23490 312 aaPredicted RBP5.94□□□□□ -1.46
NPHP4-203ENST00000378169 EPPK1P58107 5090 aaKnown RBP5.9□□□□□ -1.47
NPHP4-203ENST00000378169 KRTAP4-1Q9BYQ7 146 aa5.86□□□□□ -1.47
NPHP4-203ENST00000378169 HSPG2P98160 4391 aa5.84□□□□□ -1.47
NPHP4-203ENST00000378169 LRP2P98164 4655 aa5.82□□□□□ -1.48
NPHP4-203ENST00000378169 HERC2O95714 4834 aa5.72□□□□□ -1.49
NPHP4-203ENST00000378169 KRTAP15-1Q3LI76 137 aa5.69□□□□□ -1.5
NPHP4-203ENST00000378169 KRTAP10-12P60413 245 aa5.63□□□□□ -1.51
NPHP4-203ENST00000378169 ABCA13Q86UQ4 5058 aa5.62□□□□□ -1.51
NPHP4-203ENST00000378169 PKHD1L1Q86WI1 4243 aa5.62□□□□□ -1.51
NPHP4-203ENST00000378169 LPAP08519 4548 aa5.61□□□□□ -1.51
NPHP4-203ENST00000378169 BIRC6Q9NR09 4857 aa5.6□□□□□ -1.51
NPHP4-203ENST00000378169 LCE3AQ5TA76 89 aa5.54□□□□□ -1.52
NPHP4-203ENST00000378169 TNXBP22105 4242 aa5.53□□□□□ -1.52
NPHP4-203ENST00000378169 MT1HP80294 61 aa5.53□□□□□ -1.52
NPHP4-203ENST00000378169 KRTAP12-3P60328 96 aa5.5□□□□□ -1.53
NPHP4-203ENST00000378169 MT2AP02795 61 aa5.46□□□□□ -1.54
NPHP4-203ENST00000378169 HERC1Q15751 4861 aa5.43□□□□□ -1.54
NPHP4-203ENST00000378169 MT1FP04733 61 aa5.41□□□□□ -1.54
NPHP4-203ENST00000378169 SPRR2GQ9BYE4 73 aa5.38□□□□□ -1.55
NPHP4-203ENST00000378169 KRTAP23-1A1A580 65 aa5.37□□□□□ -1.55
NPHP4-203ENST00000378169 PCLOQ9Y6V0 5065 aa5.36□□□□□ -1.55
NPHP4-203ENST00000378169 CRCT1Q9UGL9 99 aa5.36□□□□□ -1.55
NPHP4-203ENST00000378169 MUC2Q02817 5179 aa5.32□□□□□ -1.56
NPHP4-203ENST00000378169 RNF213Q63HN8 5207 aa5.24□□□□□ -1.57
NPHP4-203ENST00000378169 KRTAP19-1Q8IUB9 90 aa5.23□□□□□ -1.57
NPHP4-203ENST00000378169 UBR4Q5T4S7 5183 aa5.18□□□□□ -1.58
NPHP4-203ENST00000378169 FAT4Q6V0I7 4981 aa5.16□□□□□ -1.58
NPHP4-203ENST00000378169 KRTAP8-1Q8IUC2 63 aa5.16□□□□□ -1.58
NPHP4-203ENST00000378169 HMCN2Q8NDA2 5059 aa5.13□□□□□ -1.59
NPHP4-203ENST00000378169 LCE2CQ5TA81 110 aa5.12□□□□□ -1.59
NPHP4-203ENST00000378169 MUC17Q685J3 4493 aa5.09□□□□□ -1.59
NPHP4-203ENST00000378169 KRTAP19-2Q3LHN2 52 aa5.08□□□□□ -1.6
NPHP4-203ENST00000378169 KRTAP9-8Q9BYQ0 159 aa5.06□□□□□ -1.6
NPHP4-203ENST00000378169 KRTAP19-8Q3LI54 63 aa5.04□□□□□ -1.6
NPHP4-203ENST00000378169 INE1O15225 51 aa5.04□□□□□ -1.6
NPHP4-203ENST00000378169 KRTAP19-5Q3LI72 72 aa5.04□□□□□ -1.6
NPHP4-203ENST00000378169 KRTAP10-7P60409 375 aaPredicted RBP5.03□□□□□ -1.6
NPHP4-203ENST00000378169 FLGP20930 4061 aaPredicted RBP5.02□□□□□ -1.61
NPHP4-203ENST00000378169 FSIP2Q5CZC0 6907 aa5□□□□□ -1.61
NPHP4-203ENST00000378169 MT1BP07438 61 aa4.99□□□□□ -1.61
NPHP4-203ENST00000378169 MT1XP80297 61 aa4.98□□□□□ -1.61
NPHP4-203ENST00000378169 KRTAP10-5P60370 271 aa4.94□□□□□ -1.62
NPHP4-203ENST00000378169 KRTAP9-3Q9BYQ3 159 aa4.89□□□□□ -1.63
NPHP4-203ENST00000378169 SPRR2FQ96RM1 72 aa4.88□□□□□ -1.63
NPHP4-203ENST00000378169 LCE3CQ5T5A8 94 aa4.86□□□□□ -1.63
NPHP4-203ENST00000378169 KRTAP4-8A0A0G2JLE6 195 aa4.86□□□□□ -1.63
NPHP4-203ENST00000378169 KRTAP4-8Q9BYQ9 185 aa4.86□□□□□ -1.63
NPHP4-203ENST00000378169 LCE2BO14633 110 aa4.76□□□□□ -1.65
NPHP4-203ENST00000378169 SYNE1Q8NF91 8797 aaKnown RBP4.75□□□□□ -1.65
NPHP4-203ENST00000378169 OBSCNQ5VST9 7968 aa4.69□□□□□ -1.66
NPHP4-203ENST00000378169 SPRR5A0A1B0GTR4 108 aa4.61□□□□□ -1.67
NPHP4-203ENST00000378169 USH2AO75445 5202 aa4.6□□□□□ -1.67
NPHP4-203ENST00000378169 KRTAP4-7Q9BYR0 210 aa4.57□□□□□ -1.68
NPHP4-203ENST00000378169 MT1GP13640 62 aa4.57□□□□□ -1.68
NPHP4-203ENST00000378169 LCE2AQ5TA79 106 aaPredicted RBP4.55□□□□□ -1.68
NPHP4-203ENST00000378169 KRTAP19-4Q3LI73 84 aa4.54□□□□□ -1.68
NPHP4-203ENST00000378169 SPRR2EP22531 72 aa4.48□□□□□ -1.69
NPHP4-203ENST00000378169 SPRR2BP35325 72 aa4.48□□□□□ -1.69
NPHP4-203ENST00000378169 SPRR2AP35326 72 aa4.48□□□□□ -1.69
NPHP4-203ENST00000378169 LCE3BQ5TA77 95 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms