RNA–Protein interactions for RNA: ENST00000375274.6

PTCH1-203, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 4,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-203ENST00000375274 VPS13DQ5THJ4 4388 aa5.12□□□□□ -1.59
PTCH1-203ENST00000375274 PLECQ15149 4684 aaKnown RBP5.1□□□□□ -1.59
PTCH1-203ENST00000375274 DNAH5Q8TE73 4624 aa5.08□□□□□ -1.6
PTCH1-203ENST00000375274 DNHD1Q96M86 4753 aa5.08□□□□□ -1.6
PTCH1-203ENST00000375274 KRTAP4-5Q9BYR2 181 aa5.06□□□□□ -1.6
PTCH1-203ENST00000375274 DNAH11Q96DT5 4516 aa5.06□□□□□ -1.6
PTCH1-203ENST00000375274 LORP23490 312 aaPredicted RBP5.05□□□□□ -1.6
PTCH1-203ENST00000375274 DYNC2H1Q8NCM8 4307 aaKnown RBP5.04□□□□□ -1.6
PTCH1-203ENST00000375274 PRKDCP78527 4128 aaKnown RBP5.03□□□□□ -1.6
PTCH1-203ENST00000375274 DNAH1Q9P2D7 4330 aa5.01□□□□□ -1.61
PTCH1-203ENST00000375274 STARD9Q9P2P6 4700 aa5.01□□□□□ -1.61
PTCH1-203ENST00000375274 DNAH6Q9C0G6 4158 aa5.01□□□□□ -1.61
PTCH1-203ENST00000375274 DNAH17Q9UFH2 4485 aa5□□□□□ -1.61
PTCH1-203ENST00000375274 KRTAP10-12P60413 245 aa4.99□□□□□ -1.61
PTCH1-203ENST00000375274 KRTAP23-1A1A580 65 aa4.98□□□□□ -1.61
PTCH1-203ENST00000375274 INE1O15225 51 aa4.98□□□□□ -1.61
PTCH1-203ENST00000375274 DNAH10Q8IVF4 4471 aa4.97□□□□□ -1.61
PTCH1-203ENST00000375274 KRTAP12-3P60328 96 aa4.92□□□□□ -1.62
PTCH1-203ENST00000375274 DNAH7Q8WXX0 4024 aa4.9□□□□□ -1.63
PTCH1-203ENST00000375274 LCE3AQ5TA76 89 aa4.89□□□□□ -1.63
PTCH1-203ENST00000375274 FAT1Q14517 4588 aa4.89□□□□□ -1.63
PTCH1-203ENST00000375274 DNAH8Q96JB1 4490 aa4.89□□□□□ -1.63
PTCH1-203ENST00000375274 DYNC1H1Q14204 4646 aaKnown RBP4.87□□□□□ -1.63
PTCH1-203ENST00000375274 DNAH2Q9P225 4427 aa4.87□□□□□ -1.63
PTCH1-203ENST00000375274 LRP1BQ9NZR2 4599 aa4.83□□□□□ -1.64
PTCH1-203ENST00000375274 KRTAP4-1Q9BYQ7 146 aa4.79□□□□□ -1.64
PTCH1-203ENST00000375274 FAT2Q9NYQ8 4349 aa4.77□□□□□ -1.65
PTCH1-203ENST00000375274 SACSQ9NZJ4 4579 aa4.76□□□□□ -1.65
PTCH1-203ENST00000375274 RYR2Q92736 4967 aa4.76□□□□□ -1.65
PTCH1-203ENST00000375274 KMT2AQ03164 3969 aa4.75□□□□□ -1.65
PTCH1-203ENST00000375274 RYR1P21817 5038 aa4.72□□□□□ -1.65
PTCH1-203ENST00000375274 MYCBP2O75592 4640 aa4.7□□□□□ -1.66
PTCH1-203ENST00000375274 CRCT1Q9UGL9 99 aa4.69□□□□□ -1.66
PTCH1-203ENST00000375274 HECTD4Q9Y4D8 3996 aa4.65□□□□□ -1.67
PTCH1-203ENST00000375274 APOBP04114 4563 aaKnown RBP4.63□□□□□ -1.67
PTCH1-203ENST00000375274 LYSTQ99698 3801 aa4.63□□□□□ -1.67
PTCH1-203ENST00000375274 SPRR2GQ9BYE4 73 aa4.62□□□□□ -1.67
PTCH1-203ENST00000375274 HYDINQ4G0P3 5121 aa4.62□□□□□ -1.67
PTCH1-203ENST00000375274 VPS13BQ7Z7G8 4022 aa4.6□□□□□ -1.67
PTCH1-203ENST00000375274 KIAA1109Q2LD37 5005 aa4.59□□□□□ -1.68
PTCH1-203ENST00000375274 MT2AP02795 61 aa4.57□□□□□ -1.68
PTCH1-203ENST00000375274 MT1HP80294 61 aa4.57□□□□□ -1.68
PTCH1-203ENST00000375274 RYR3Q15413 4870 aa4.56□□□□□ -1.68
PTCH1-203ENST00000375274 BIRC6Q9NR09 4857 aa4.54□□□□□ -1.68
PTCH1-203ENST00000375274 PKD1P98161 4303 aa4.54□□□□□ -1.68
PTCH1-203ENST00000375274 FRAS1Q86XX4 4008 aa4.53□□□□□ -1.68
PTCH1-203ENST00000375274 KRTAP17-1Q9BYP8 105 aa4.52□□□□□ -1.69
PTCH1-203ENST00000375274 LRP1Q07954 4544 aaKnown RBP4.5□□□□□ -1.69
PTCH1-203ENST00000375274 MT1FP04733 61 aa4.49□□□□□ -1.69
PTCH1-203ENST00000375274 FAT3Q8TDW7 4589 aa4.49□□□□□ -1.69
PTCH1-203ENST00000375274 KRTAP8-1Q8IUC2 63 aa4.48□□□□□ -1.69
PTCH1-203ENST00000375274 HSPG2P98160 4391 aa4.47□□□□□ -1.69
PTCH1-203ENST00000375274 KMT2CQ8NEZ4 4911 aaKnown RBP4.46□□□□□ -1.7
PTCH1-203ENST00000375274 KRTAP10-5P60370 271 aa4.45□□□□□ -1.7
PTCH1-203ENST00000375274 PKHD1P08F94 4074 aa4.42□□□□□ -1.7
PTCH1-203ENST00000375274 KRTAP19-1Q8IUB9 90 aa4.39□□□□□ -1.71
PTCH1-203ENST00000375274 PKHD1L1Q86WI1 4243 aa4.38□□□□□ -1.71
PTCH1-203ENST00000375274 KRTAP19-5Q3LI72 72 aa4.37□□□□□ -1.71
PTCH1-203ENST00000375274 LRP2P98164 4655 aa4.34□□□□□ -1.71
PTCH1-203ENST00000375274 HERC2O95714 4834 aa4.34□□□□□ -1.71
PTCH1-203ENST00000375274 LCE3CQ5T5A8 94 aa4.34□□□□□ -1.72
PTCH1-203ENST00000375274 KRTAP19-8Q3LI54 63 aa4.3□□□□□ -1.72
PTCH1-203ENST00000375274 EPPK1P58107 5090 aaKnown RBP4.28□□□□□ -1.72
PTCH1-203ENST00000375274 KRTAP10-7P60409 375 aaPredicted RBP4.26□□□□□ -1.73
PTCH1-203ENST00000375274 SPRR5A0A1B0GTR4 108 aa4.24□□□□□ -1.73
PTCH1-203ENST00000375274 TNXBP22105 4242 aa4.23□□□□□ -1.73
PTCH1-203ENST00000375274 MT1XP80297 61 aa4.21□□□□□ -1.74
PTCH1-203ENST00000375274 KRTAP19-4Q3LI73 84 aa4.21□□□□□ -1.74
PTCH1-203ENST00000375274 MT1BP07438 61 aa4.18□□□□□ -1.74
PTCH1-203ENST00000375274 ABCA13Q86UQ4 5058 aa4.17□□□□□ -1.74
PTCH1-203ENST00000375274 HERC1Q15751 4861 aa4.17□□□□□ -1.74
PTCH1-203ENST00000375274 KRTAP9-8Q9BYQ0 159 aa4.14□□□□□ -1.75
PTCH1-203ENST00000375274 SPRR2FQ96RM1 72 aa4.12□□□□□ -1.75
PTCH1-203ENST00000375274 LCE2CQ5TA81 110 aa4.12□□□□□ -1.75
PTCH1-203ENST00000375274 PCLOQ9Y6V0 5065 aa4.09□□□□□ -1.75
PTCH1-203ENST00000375274 MUC17Q685J3 4493 aa4.04□□□□□ -1.76
PTCH1-203ENST00000375274 LPAP08519 4548 aa4.03□□□□□ -1.76
PTCH1-203ENST00000375274 KRTAP4-8A0A0G2JLE6 195 aa4.03□□□□□ -1.76
PTCH1-203ENST00000375274 KRTAP19-2Q3LHN2 52 aa4.03□□□□□ -1.76
PTCH1-203ENST00000375274 KRTAP4-8Q9BYQ9 185 aa4.03□□□□□ -1.76
PTCH1-203ENST00000375274 KRTAP9-3Q9BYQ3 159 aa4.02□□□□□ -1.77
PTCH1-203ENST00000375274 KRTAP12-4P60329 112 aa3.96□□□□□ -1.78
PTCH1-203ENST00000375274 SYNE1Q8NF91 8797 aaKnown RBP3.94□□□□□ -1.78
PTCH1-203ENST00000375274 MT1GP13640 62 aa3.93□□□□□ -1.78
PTCH1-203ENST00000375274 LCE2DQ5TA82 110 aaPredicted RBP3.92□□□□□ -1.78
PTCH1-203ENST00000375274 LCE3BQ5TA77 95 aa3.92□□□□□ -1.78
PTCH1-203ENST00000375274 HMCN2Q8NDA2 5059 aa3.91□□□□□ -1.78
PTCH1-203ENST00000375274 KRTAP9-2Q9BYQ4 174 aa3.91□□□□□ -1.78
PTCH1-203ENST00000375274 KRTAP9-6A0A140TA67 174 aa3.88□□□□□ -1.79
PTCH1-203ENST00000375274 FLGP20930 4061 aaPredicted RBP3.88□□□□□ -1.79
PTCH1-203ENST00000375274 KRTAP4-7Q9BYR0 210 aa3.84□□□□□ -1.79
PTCH1-203ENST00000375274 SPRR2EP22531 72 aa3.84□□□□□ -1.8
PTCH1-203ENST00000375274 SPRR2BP35325 72 aa3.84□□□□□ -1.8
PTCH1-203ENST00000375274 SPRR2AP35326 72 aa3.84□□□□□ -1.8
PTCH1-203ENST00000375274 LCE2BO14633 110 aa3.83□□□□□ -1.8
PTCH1-203ENST00000375274 RNF213Q63HN8 5207 aa3.81□□□□□ -1.8
PTCH1-203ENST00000375274 UBR4Q5T4S7 5183 aa3.81□□□□□ -1.8
PTCH1-203ENST00000375274 MT1LQ93083 61 aa3.8□□□□□ -1.8
PTCH1-203ENST00000375274 LCE2AQ5TA79 106 aaPredicted RBP3.76□□□□□ -1.81
PTCH1-203ENST00000375274 MT1EP04732 61 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms