RNA–Protein interactions for RNA: ENST00000372755.7

VCL-202, Transcript of vinculin, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VCL, Length 6,489 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-202ENST00000372755 SMG1Q96Q15 3661 aaKnown RBP4.47□□□□□ -1.69
VCL-202ENST00000372755 SVEP1Q4LDE5 3571 aa4.45□□□□□ -1.7
VCL-202ENST00000372755 SPRR2FQ96RM1 72 aa4.43□□□□□ -1.7
VCL-202ENST00000372755 SPENQ96T58 3664 aaKnown RBP4.43□□□□□ -1.7
VCL-202ENST00000372755 KRTAP19-5Q3LI72 72 aa4.42□□□□□ -1.7
VCL-202ENST00000372755 DNAH2Q9P225 4427 aa4.41□□□□□ -1.7
VCL-202ENST00000372755 KRTAP19-4Q3LI73 84 aa4.41□□□□□ -1.7
VCL-202ENST00000372755 LCE3CQ5T5A8 94 aa4.4□□□□□ -1.71
VCL-202ENST00000372755 ZFHX3Q15911 3703 aa4.38□□□□□ -1.71
VCL-202ENST00000372755 MT1FP04733 61 aa4.36□□□□□ -1.71
VCL-202ENST00000372755 DNAH5Q8TE73 4624 aa4.34□□□□□ -1.72
VCL-202ENST00000372755 DNAH10Q8IVF4 4471 aa4.32□□□□□ -1.72
VCL-202ENST00000372755 TRRAPQ9Y4A5 3859 aa4.31□□□□□ -1.72
VCL-202ENST00000372755 DNAH11Q96DT5 4516 aa4.28□□□□□ -1.72
VCL-202ENST00000372755 DNAH1Q9P2D7 4330 aa4.28□□□□□ -1.73
VCL-202ENST00000372755 PLECQ15149 4684 aaKnown RBP4.25□□□□□ -1.73
VCL-202ENST00000372755 CSMD2Q7Z408 3487 aa4.23□□□□□ -1.73
VCL-202ENST00000372755 DNAH9Q9NYC9 4486 aa4.22□□□□□ -1.73
VCL-202ENST00000372755 BSNQ9UPA5 3926 aa4.22□□□□□ -1.73
VCL-202ENST00000372755 SPRR2EP22531 72 aa4.18□□□□□ -1.74
VCL-202ENST00000372755 SPRR2BP35325 72 aa4.18□□□□□ -1.74
VCL-202ENST00000372755 SPRR2AP35326 72 aa4.18□□□□□ -1.74
VCL-202ENST00000372755 FAT1Q14517 4588 aa4.13□□□□□ -1.75
VCL-202ENST00000372755 KRTAP19-8Q3LI54 63 aa4.13□□□□□ -1.75
VCL-202ENST00000372755 DNAH17Q9UFH2 4485 aa4.12□□□□□ -1.75
VCL-202ENST00000372755 LCE3BQ5TA77 95 aa4.1□□□□□ -1.75
VCL-202ENST00000372755 VPS13DQ5THJ4 4388 aa4.09□□□□□ -1.75
VCL-202ENST00000372755 DYNC1H1Q14204 4646 aaKnown RBP4.07□□□□□ -1.76
VCL-202ENST00000372755 VPS13CQ709C8 3753 aa4.06□□□□□ -1.76
VCL-202ENST00000372755 SPRR2DP22532 72 aa4.06□□□□□ -1.76
VCL-202ENST00000372755 SACSQ9NZJ4 4579 aa4.04□□□□□ -1.76
VCL-202ENST00000372755 KRTAP19-1Q8IUB9 90 aa4.04□□□□□ -1.76
VCL-202ENST00000372755 KRTAP12-4P60329 112 aa4.03□□□□□ -1.76
VCL-202ENST00000372755 LCE2BO14633 110 aa4.03□□□□□ -1.76
VCL-202ENST00000372755 MT1GP13640 62 aa4.02□□□□□ -1.77
VCL-202ENST00000372755 MT1XP80297 61 aa4.01□□□□□ -1.77
VCL-202ENST00000372755 DNAH8Q96JB1 4490 aa4□□□□□ -1.77
VCL-202ENST00000372755 FAT2Q9NYQ8 4349 aa3.98□□□□□ -1.77
VCL-202ENST00000372755 LRP1BQ9NZR2 4599 aa3.98□□□□□ -1.77
VCL-202ENST00000372755 LRP1Q07954 4544 aaKnown RBP3.95□□□□□ -1.78
VCL-202ENST00000372755 AKAP9Q99996 3911 aa3.95□□□□□ -1.78
VCL-202ENST00000372755 HERC1Q15751 4861 aa3.95□□□□□ -1.78
VCL-202ENST00000372755 DYNC2H1Q8NCM8 4307 aaKnown RBP3.94□□□□□ -1.78
VCL-202ENST00000372755 CSMD3Q7Z407 3707 aa3.94□□□□□ -1.78
VCL-202ENST00000372755 RYR1P21817 5038 aa3.93□□□□□ -1.78
VCL-202ENST00000372755 MT1BP07438 61 aa3.93□□□□□ -1.78
VCL-202ENST00000372755 LCE3DQ9BYE3 92 aa3.92□□□□□ -1.78
VCL-202ENST00000372755 DNHD1Q96M86 4753 aa3.91□□□□□ -1.78
VCL-202ENST00000372755 DNAH3Q8TD57 4116 aa3.91□□□□□ -1.78
VCL-202ENST00000372755 APOBP04114 4563 aaKnown RBP3.9□□□□□ -1.79
VCL-202ENST00000372755 LCE3EQ5T5B0 92 aa3.87□□□□□ -1.79
VCL-202ENST00000372755 ZNF469Q96JG9 3925 aaPredicted RBP3.86□□□□□ -1.79
VCL-202ENST00000372755 SPRR5A0A1B0GTR4 108 aa3.86□□□□□ -1.79
VCL-202ENST00000372755 KRTAP9-8Q9BYQ0 159 aa3.86□□□□□ -1.79
VCL-202ENST00000372755 KRTAP4-8A0A0G2JLE6 195 aa3.84□□□□□ -1.8
VCL-202ENST00000372755 KRTAP4-8Q9BYQ9 185 aa3.84□□□□□ -1.8
VCL-202ENST00000372755 STARD9Q9P2P6 4700 aa3.84□□□□□ -1.8
VCL-202ENST00000372755 RYR2Q92736 4967 aa3.82□□□□□ -1.8
VCL-202ENST00000372755 FAT3Q8TDW7 4589 aa3.82□□□□□ -1.8
VCL-202ENST00000372755 RYR3Q15413 4870 aa3.81□□□□□ -1.8
VCL-202ENST00000372755 KRTAP9-3Q9BYQ3 159 aa3.8□□□□□ -1.8
VCL-202ENST00000372755 CMYA5Q8N3K9 4069 aa3.79□□□□□ -1.8
VCL-202ENST00000372755 HSPG2P98160 4391 aa3.78□□□□□ -1.8
VCL-202ENST00000372755 KRTAP19-3Q7Z4W3 81 aa3.77□□□□□ -1.81
VCL-202ENST00000372755 KIAA1109Q2LD37 5005 aa3.77□□□□□ -1.81
VCL-202ENST00000372755 LCE2CQ5TA81 110 aa3.76□□□□□ -1.81
VCL-202ENST00000372755 MT1LQ93083 61 aa3.72□□□□□ -1.81
VCL-202ENST00000372755 KRTAP17-1Q9BYP8 105 aa3.72□□□□□ -1.81
VCL-202ENST00000372755 LCE2DQ5TA82 110 aaPredicted RBP3.71□□□□□ -1.81
VCL-202ENST00000372755 ANK2Q01484 3957 aa3.7□□□□□ -1.82
VCL-202ENST00000372755 DNAH6Q9C0G6 4158 aa3.7□□□□□ -1.82
VCL-202ENST00000372755 DNAH7Q8WXX0 4024 aa3.7□□□□□ -1.82
VCL-202ENST00000372755 PRKDCP78527 4128 aaKnown RBP3.7□□□□□ -1.82
VCL-202ENST00000372755 VPS13BQ7Z7G8 4022 aa3.68□□□□□ -1.82
VCL-202ENST00000372755 MYCBP2O75592 4640 aa3.66□□□□□ -1.82
VCL-202ENST00000372755 MT1EP04732 61 aa3.65□□□□□ -1.82
VCL-202ENST00000372755 MT3P25713 68 aa3.64□□□□□ -1.83
VCL-202ENST00000372755 KRTAP4-7Q9BYR0 210 aa3.62□□□□□ -1.83
VCL-202ENST00000372755 PKD1P98161 4303 aa3.6□□□□□ -1.83
VCL-202ENST00000372755 MT1MQ8N339 61 aa3.57□□□□□ -1.84
VCL-202ENST00000372755 MT4P47944 62 aa3.55□□□□□ -1.84
VCL-202ENST00000372755 PRM1P04553 51 aa3.54□□□□□ -1.84
VCL-202ENST00000372755 FRAS1Q86XX4 4008 aa3.54□□□□□ -1.84
VCL-202ENST00000372755 PKHD1L1Q86WI1 4243 aa3.52□□□□□ -1.85
VCL-202ENST00000372755 KMT2AQ03164 3969 aa3.5□□□□□ -1.85
VCL-202ENST00000372755 LCE1BQ5T7P3 118 aa3.48□□□□□ -1.85
VCL-202ENST00000372755 KRTAP19-2Q3LHN2 52 aa3.48□□□□□ -1.85
VCL-202ENST00000372755 KRTAP19-6Q3LI70 58 aa3.48□□□□□ -1.85
VCL-202ENST00000372755 HERC2O95714 4834 aa3.48□□□□□ -1.85
VCL-202ENST00000372755 BIRC6Q9NR09 4857 aa3.48□□□□□ -1.85
VCL-202ENST00000372755 HECTD4Q9Y4D8 3996 aa3.46□□□□□ -1.86
VCL-202ENST00000372755 LCE1DQ5T752 114 aa3.46□□□□□ -1.86
VCL-202ENST00000372755 LOC100996750A0A140TA64 210 aa3.43□□□□□ -1.86
VCL-202ENST00000372755 PCLOQ9Y6V0 5065 aa3.43□□□□□ -1.86
VCL-202ENST00000372755 LYSTQ99698 3801 aa3.42□□□□□ -1.86
VCL-202ENST00000372755 MUC17Q685J3 4493 aa3.4□□□□□ -1.87
VCL-202ENST00000372755 KRTAP4-3Q9BYR4 195 aa3.37□□□□□ -1.87
VCL-202ENST00000372755 MT1AP04731 61 aa3.37□□□□□ -1.87
VCL-202ENST00000372755 KRTAP9-2Q9BYQ4 174 aa3.37□□□□□ -1.87
VCL-202ENST00000372755 LRP2P98164 4655 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms