RNA–Protein interactions for RNA: ENST00000352993.7

BRCA1-201, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5 BASIC

Gene BRCA1, Length 3,668 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-201ENST00000352993 KRTAP17-1Q9BYP8 105 aa4.11□□□□□ -1.75
BRCA1-201ENST00000352993 RPL37P61927 97 aaKnown RBP4.1□□□□□ -1.75
BRCA1-201ENST00000352993 KRTAP3-1Q9BYR8 98 aa4.1□□□□□ -1.75
BRCA1-201ENST00000352993 C10orf95Q9H7T3 257 aa4.1□□□□□ -1.75
BRCA1-201ENST00000352993 KRTAP10-1P60331 282 aa4.1□□□□□ -1.75
BRCA1-201ENST00000352993 PCLOQ9Y6V0 5065 aa4.08□□□□□ -1.76
BRCA1-201ENST00000352993 TPRXLQ17RH7 258 aa4.06□□□□□ -1.76
BRCA1-201ENST00000352993 HSPG2P98160 4391 aa4.06□□□□□ -1.76
BRCA1-201ENST00000352993 RYR1P21817 5038 aa4.06□□□□□ -1.76
BRCA1-201ENST00000352993 C20orf166-AS1Q96NR2 134 aa4.04□□□□□ -1.76
BRCA1-201ENST00000352993 ABCA13Q86UQ4 5058 aa4.04□□□□□ -1.76
BRCA1-201ENST00000352993 APOBP04114 4563 aaKnown RBP4.03□□□□□ -1.76
BRCA1-201ENST00000352993 A0A1B0GVY2 172 aa4.02□□□□□ -1.77
BRCA1-201ENST00000352993 SMR3BP02814 79 aaPredicted RBP4.02□□□□□ -1.77
BRCA1-201ENST00000352993 DNAH5Q8TE73 4624 aa4.01□□□□□ -1.77
BRCA1-201ENST00000352993 FAT3Q8TDW7 4589 aa4□□□□□ -1.77
BRCA1-201ENST00000352993 KRTAP13-4Q3LI77 160 aa4□□□□□ -1.77
BRCA1-201ENST00000352993 LRP1BQ9NZR2 4599 aa3.96□□□□□ -1.78
BRCA1-201ENST00000352993 KRTAP10-6P60371 365 aaPredicted RBP3.96□□□□□ -1.78
BRCA1-201ENST00000352993 KRTAP15-1Q3LI76 137 aa3.96□□□□□ -1.78
BRCA1-201ENST00000352993 S4R3F8 94 aa3.96□□□□□ -1.78
BRCA1-201ENST00000352993 RPS29P62273 56 aaKnown RBP3.95□□□□□ -1.78
BRCA1-201ENST00000352993 TNXBP22105 4242 aa3.93□□□□□ -1.78
BRCA1-201ENST00000352993 KRTAP12-2P59991 146 aa3.92□□□□□ -1.78
BRCA1-201ENST00000352993 KIAA1109Q2LD37 5005 aa3.91□□□□□ -1.78
BRCA1-201ENST00000352993 A0A0A0MQY5 61 aa3.89□□□□□ -1.79
BRCA1-201ENST00000352993 LCE2BO14633 110 aa3.88□□□□□ -1.79
BRCA1-201ENST00000352993 FAT1Q14517 4588 aa3.85□□□□□ -1.79
BRCA1-201ENST00000352993 KRTAP12-1P59990 96 aa3.84□□□□□ -1.79
BRCA1-201ENST00000352993 MYCBP2O75592 4640 aa3.84□□□□□ -1.8
BRCA1-201ENST00000352993 KRTAP10-8P60410 259 aa3.83□□□□□ -1.8
BRCA1-201ENST00000352993 LUZP6Q538Z0 58 aa3.83□□□□□ -1.8
BRCA1-201ENST00000352993 XP32Q5T750 250 aa3.79□□□□□ -1.8
BRCA1-201ENST00000352993 KRTAP4-5Q9BYR2 181 aa3.79□□□□□ -1.8
BRCA1-201ENST00000352993 PLAC4Q8WY50 150 aa3.77□□□□□ -1.81
BRCA1-201ENST00000352993 M0QZ58 72 aa3.76□□□□□ -1.81
BRCA1-201ENST00000352993 HMCN2Q8NDA2 5059 aa3.74□□□□□ -1.81
BRCA1-201ENST00000352993 R4GN34 69 aa3.73□□□□□ -1.81
BRCA1-201ENST00000352993 HERC1Q15751 4861 aa3.72□□□□□ -1.81
BRCA1-201ENST00000352993 KRTAP10-4P60372 401 aaPredicted RBP3.69□□□□□ -1.82
BRCA1-201ENST00000352993 CAMK2N1Q7Z7J9 78 aa3.63□□□□□ -1.83
BRCA1-201ENST00000352993 LCE2AQ5TA79 106 aaPredicted RBP3.62□□□□□ -1.83
BRCA1-201ENST00000352993 MUC17Q685J3 4493 aa3.61□□□□□ -1.83
BRCA1-201ENST00000352993 Q5VSD8 79 aa3.6□□□□□ -1.83
BRCA1-201ENST00000352993 LRP1Q07954 4544 aaKnown RBP3.6□□□□□ -1.83
BRCA1-201ENST00000352993 KRTAP9-6A0A140TA67 174 aa3.59□□□□□ -1.83
BRCA1-201ENST00000352993 LCE2CQ5TA81 110 aa3.58□□□□□ -1.84
BRCA1-201ENST00000352993 LORP23490 312 aaPredicted RBP3.54□□□□□ -1.84
BRCA1-201ENST00000352993 PP632Q6XCG6 107 aa3.54□□□□□ -1.84
BRCA1-201ENST00000352993 MT1HL1P0DM35 61 aa3.51□□□□□ -1.85
BRCA1-201ENST00000352993 J3QL48 77 aa3.5□□□□□ -1.85
BRCA1-201ENST00000352993 LPAP08519 4548 aa3.49□□□□□ -1.85
BRCA1-201ENST00000352993 LRP2P98164 4655 aa3.46□□□□□ -1.85
BRCA1-201ENST00000352993 UBR4Q5T4S7 5183 aa3.46□□□□□ -1.86
BRCA1-201ENST00000352993 TNP1P09430 55 aa3.43□□□□□ -1.86
BRCA1-201ENST00000352993 RNF213Q63HN8 5207 aa3.43□□□□□ -1.86
BRCA1-201ENST00000352993 FLGP20930 4061 aaPredicted RBP3.43□□□□□ -1.86
BRCA1-201ENST00000352993 SEC61BP60468 96 aaKnown RBP3.4□□□□□ -1.87
BRCA1-201ENST00000352993 FAT4Q6V0I7 4981 aa3.38□□□□□ -1.87
BRCA1-201ENST00000352993 KRTAP9-2Q9BYQ4 174 aa3.35□□□□□ -1.87
BRCA1-201ENST00000352993 LOC100996750A0A140TA64 210 aa3.32□□□□□ -1.88
BRCA1-201ENST00000352993 KRTAP4-6Q9BYQ5 205 aa3.32□□□□□ -1.88
BRCA1-201ENST00000352993 KRTAP4-1Q9BYQ7 146 aa3.3□□□□□ -1.88
BRCA1-201ENST00000352993 SPRR5A0A1B0GTR4 108 aa3.28□□□□□ -1.89
BRCA1-201ENST00000352993 PRO2289Q9P1D8 64 aa3.28□□□□□ -1.89
BRCA1-201ENST00000352993 KRTAP23-1A1A580 65 aa3.24□□□□□ -1.89
BRCA1-201ENST00000352993 LCE3AQ5TA76 89 aa3.19□□□□□ -1.9
BRCA1-201ENST00000352993 INE1O15225 51 aa3.18□□□□□ -1.9
BRCA1-201ENST00000352993 M0R2T5 61 aa3.14□□□□□ -1.91
BRCA1-201ENST00000352993 KRTAP19-2Q3LHN2 52 aa3.14□□□□□ -1.91
BRCA1-201ENST00000352993 MUC2Q02817 5179 aa3.1□□□□□ -1.91
BRCA1-201ENST00000352993 CRCT1Q9UGL9 99 aa3.09□□□□□ -1.92
BRCA1-201ENST00000352993 KRTAP9-7A8MTY7 169 aa3.07□□□□□ -1.92
BRCA1-201ENST00000352993 KRTAP4-8Q9BYQ9 185 aa3.05□□□□□ -1.92
BRCA1-201ENST00000352993 KRTAP10-10P60014 251 aa3.04□□□□□ -1.92
BRCA1-201ENST00000352993 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.03□□□□□ -1.93
BRCA1-201ENST00000352993 KRTAP12-3P60328 96 aa3.03□□□□□ -1.93
BRCA1-201ENST00000352993 KRTAP19-1Q8IUB9 90 aa3.03□□□□□ -1.93
BRCA1-201ENST00000352993 SPRR2GQ9BYE4 73 aa3.03□□□□□ -1.93
BRCA1-201ENST00000352993 SSPOA2VEC9 5147 aa3.02□□□□□ -1.93
BRCA1-201ENST00000352993 KRTAP8-1Q8IUC2 63 aa3.01□□□□□ -1.93
BRCA1-201ENST00000352993 MT1HP80294 61 aa2.98□□□□□ -1.93
BRCA1-201ENST00000352993 KRTAP10-12P60413 245 aa2.97□□□□□ -1.93
BRCA1-201ENST00000352993 KRTAP4-12Q9BQ66 201 aa2.92□□□□□ -1.94
BRCA1-201ENST00000352993 MT1FP04733 61 aa2.91□□□□□ -1.94
BRCA1-201ENST00000352993 MT2AP02795 61 aa2.89□□□□□ -1.95
BRCA1-201ENST00000352993 KRTAP10-5P60370 271 aa2.89□□□□□ -1.95
BRCA1-201ENST00000352993 KRTAP10-7P60409 375 aaPredicted RBP2.88□□□□□ -1.95
BRCA1-201ENST00000352993 MT1XP80297 61 aa2.88□□□□□ -1.95
BRCA1-201ENST00000352993 KRTAP9-9Q9BYP9 154 aa2.87□□□□□ -1.95
BRCA1-201ENST00000352993 KRTAP9-4Q9BYQ2 154 aa2.87□□□□□ -1.95
BRCA1-201ENST00000352993 LCE3BQ5TA77 95 aa2.86□□□□□ -1.95
BRCA1-201ENST00000352993 KRTAP9-8Q9BYQ0 159 aa2.85□□□□□ -1.95
BRCA1-201ENST00000352993 MT1BP07438 61 aa2.83□□□□□ -1.96
BRCA1-201ENST00000352993 KRTAP19-8Q3LI54 63 aa2.82□□□□□ -1.96
BRCA1-201ENST00000352993 LCE3CQ5T5A8 94 aa2.82□□□□□ -1.96
BRCA1-201ENST00000352993 USH2AO75445 5202 aa2.81□□□□□ -1.96
BRCA1-201ENST00000352993 KRTAP19-5Q3LI72 72 aa2.81□□□□□ -1.96
BRCA1-201ENST00000352993 KRTAP4-8A0A0G2JLE6 195 aa2.79□□□□□ -1.96
BRCA1-201ENST00000352993 KRTAP19-6Q3LI70 58 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms