RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 A0A1B0GU33 70 aa11.46□□□□□ -0.57
UPF3A-201ENST00000351487 H1FX-AS1Q4G0G2 97 aa11.44□□□□□ -0.58
UPF3A-201ENST00000351487 MT1HL1P0DM35 61 aa11.43□□□□□ -0.58
UPF3A-201ENST00000351487 ADM2Q7Z4H4 148 aa11.36□□□□□ -0.59
UPF3A-201ENST00000351487 PRAC1Q96KF2 57 aa11.36□□□□□ -0.59
UPF3A-201ENST00000351487 KRTAP3-3Q9BYR6 98 aa11.33□□□□□ -0.59
UPF3A-201ENST00000351487 KIAA1109Q2LD37 5005 aa11.3□□□□□ -0.6
UPF3A-201ENST00000351487 MYCBP2O75592 4640 aa11.29□□□□□ -0.6
UPF3A-201ENST00000351487 S4R3F8 94 aa11.23□□□□□ -0.61
UPF3A-201ENST00000351487 KRTAP10-6P60371 365 aaPredicted RBP11.2□□□□□ -0.62
UPF3A-201ENST00000351487 TPRXLQ17RH7 258 aa11.18□□□□□ -0.62
UPF3A-201ENST00000351487 KRTAP3-2Q9BYR7 98 aa11.13□□□□□ -0.63
UPF3A-201ENST00000351487 EPPK1P58107 5090 aaKnown RBP11.1□□□□□ -0.63
UPF3A-201ENST00000351487 CSAG1Q6PB30 78 aa11.08□□□□□ -0.64
UPF3A-201ENST00000351487 K7ERS5 55 aa11.06□□□□□ -0.64
UPF3A-201ENST00000351487 KRTAP13-4Q3LI77 160 aa11.03□□□□□ -0.64
UPF3A-201ENST00000351487 LINC01554Q52M75 96 aa10.99□□□□□ -0.65
UPF3A-201ENST00000351487 LRP2P98164 4655 aa10.98□□□□□ -0.65
UPF3A-201ENST00000351487 P0C880 135 aa10.96□□□□□ -0.66
UPF3A-201ENST00000351487 LPAP08519 4548 aa10.93□□□□□ -0.66
UPF3A-201ENST00000351487 KRTAP4-5Q9BYR2 181 aa10.92□□□□□ -0.66
UPF3A-201ENST00000351487 A0A0D9SG42 100 aa10.85□□□□□ -0.67
UPF3A-201ENST00000351487 KRTAP25-1Q3LHN0 102 aa10.85□□□□□ -0.67
UPF3A-201ENST00000351487 ROMO1P60602 79 aa10.79□□□□□ -0.68
UPF3A-201ENST00000351487 ABCA13Q86UQ4 5058 aa10.79□□□□□ -0.68
UPF3A-201ENST00000351487 SEC61BP60468 96 aaKnown RBP10.73□□□□□ -0.69
UPF3A-201ENST00000351487 M0QZ58 72 aa10.68□□□□□ -0.7
UPF3A-201ENST00000351487 BIRC6Q9NR09 4857 aa10.68□□□□□ -0.7
UPF3A-201ENST00000351487 KRTAP12-2P59991 146 aa10.65□□□□□ -0.7
UPF3A-201ENST00000351487 KRTAP12-1P59990 96 aa10.62□□□□□ -0.71
UPF3A-201ENST00000351487 CRIPTQ9P021 101 aa10.61□□□□□ -0.71
UPF3A-201ENST00000351487 J3QL48 77 aa10.6□□□□□ -0.71
UPF3A-201ENST00000351487 MUC17Q685J3 4493 aa10.58□□□□□ -0.72
UPF3A-201ENST00000351487 KRTAP4-1Q9BYQ7 146 aa10.54□□□□□ -0.72
UPF3A-201ENST00000351487 SPINT4Q6UDR6 99 aa10.52□□□□□ -0.73
UPF3A-201ENST00000351487 HERC2O95714 4834 aa10.5□□□□□ -0.73
UPF3A-201ENST00000351487 KRTAP19-2Q3LHN2 52 aa10.42□□□□□ -0.74
UPF3A-201ENST00000351487 R4GN34 69 aa10.39□□□□□ -0.75
UPF3A-201ENST00000351487 C10orf95Q9H7T3 257 aa10.33□□□□□ -0.76
UPF3A-201ENST00000351487 LORP23490 312 aaPredicted RBP10.27□□□□□ -0.76
UPF3A-201ENST00000351487 PCLOQ9Y6V0 5065 aa10.25□□□□□ -0.77
UPF3A-201ENST00000351487 FLGP20930 4061 aaPredicted RBP10.06□□□□□ -0.8
UPF3A-201ENST00000351487 MUC2Q02817 5179 aa9.96□□□□□ -0.81
UPF3A-201ENST00000351487 HERC1Q15751 4861 aa9.96□□□□□ -0.81
UPF3A-201ENST00000351487 HMCN2Q8NDA2 5059 aa9.91□□□□□ -0.82
UPF3A-201ENST00000351487 KRTAP15-1Q3LI76 137 aa9.86□□□□□ -0.83
UPF3A-201ENST00000351487 CAMK2N1Q7Z7J9 78 aa9.83□□□□□ -0.84
UPF3A-201ENST00000351487 LCE2CQ5TA81 110 aa9.82□□□□□ -0.84
UPF3A-201ENST00000351487 H3BS24 57 aa9.7□□□□□ -0.86
UPF3A-201ENST00000351487 PP632Q6XCG6 107 aa9.67□□□□□ -0.86
UPF3A-201ENST00000351487 SPRR2GQ9BYE4 73 aa9.59□□□□□ -0.87
UPF3A-201ENST00000351487 MT1HP80294 61 aa9.55□□□□□ -0.88
UPF3A-201ENST00000351487 FAT4Q6V0I7 4981 aa9.55□□□□□ -0.88
UPF3A-201ENST00000351487 KRTAP19-1Q8IUB9 90 aa9.51□□□□□ -0.89
UPF3A-201ENST00000351487 PLAC4Q8WY50 150 aa9.51□□□□□ -0.89
UPF3A-201ENST00000351487 M0R2T5 61 aa9.5□□□□□ -0.89
UPF3A-201ENST00000351487 TNP1P09430 55 aa9.49□□□□□ -0.89
UPF3A-201ENST00000351487 NDUFAF8A1L188 74 aa9.47□□□□□ -0.89
UPF3A-201ENST00000351487 KRTAP23-1A1A580 65 aa9.44□□□□□ -0.9
UPF3A-201ENST00000351487 RNF213Q63HN8 5207 aa9.42□□□□□ -0.9
UPF3A-201ENST00000351487 UBR4Q5T4S7 5183 aa9.38□□□□□ -0.91
UPF3A-201ENST00000351487 MT2AP02795 61 aa9.37□□□□□ -0.91
UPF3A-201ENST00000351487 MT1FP04733 61 aa9.36□□□□□ -0.91
UPF3A-201ENST00000351487 KRTAP9-8Q9BYQ0 159 aa9.33□□□□□ -0.92
UPF3A-201ENST00000351487 KRTAP10-10P60014 251 aa9.3□□□□□ -0.92
UPF3A-201ENST00000351487 KRTAP19-8Q3LI54 63 aa9.2□□□□□ -0.94
UPF3A-201ENST00000351487 MT1BP07438 61 aa9.05□□□□□ -0.96
UPF3A-201ENST00000351487 LUZP6Q538Z0 58 aa9.01□□□□□ -0.97
UPF3A-201ENST00000351487 LCE3AQ5TA76 89 aa8.99□□□□□ -0.97
UPF3A-201ENST00000351487 SPRR5A0A1B0GTR4 108 aa8.97□□□□□ -0.97
UPF3A-201ENST00000351487 KRTAP9-3Q9BYQ3 159 aa8.95□□□□□ -0.98
UPF3A-201ENST00000351487 KRTAP10-5P60370 271 aa8.95□□□□□ -0.98
UPF3A-201ENST00000351487 MT1XP80297 61 aa8.94□□□□□ -0.98
UPF3A-201ENST00000351487 KRTAP8-1Q8IUC2 63 aa8.84□□□□□ -0.99
UPF3A-201ENST00000351487 KRTAP10-12P60413 245 aa8.72□□□□□ -1.01
UPF3A-201ENST00000351487 PRO2289Q9P1D8 64 aa8.65□□□□□ -1.02
UPF3A-201ENST00000351487 KRTAP10-7P60409 375 aaPredicted RBP8.64□□□□□ -1.03
UPF3A-201ENST00000351487 KRTAP12-3P60328 96 aa8.58□□□□□ -1.04
UPF3A-201ENST00000351487 LCE2BO14633 110 aa8.58□□□□□ -1.04
UPF3A-201ENST00000351487 LCE2AQ5TA79 106 aaPredicted RBP8.57□□□□□ -1.04
UPF3A-201ENST00000351487 A0A0A0MQY5 61 aa8.44□□□□□ -1.06
UPF3A-201ENST00000351487 KRTAP19-5Q3LI72 72 aa8.26□□□□□ -1.09
UPF3A-201ENST00000351487 USH2AO75445 5202 aa8.19□□□□□ -1.1
UPF3A-201ENST00000351487 KRTAP4-8A0A0G2JLE6 195 aa8.1□□□□□ -1.11
UPF3A-201ENST00000351487 KRTAP4-8Q9BYQ9 185 aa8.1□□□□□ -1.11
UPF3A-201ENST00000351487 LCE3CQ5T5A8 94 aa8.08□□□□□ -1.12
UPF3A-201ENST00000351487 KMT2DO14686 5537 aa7.99□□□□□ -1.13
UPF3A-201ENST00000351487 KRTAP19-7Q3SYF9 63 aa7.98□□□□□ -1.13
UPF3A-201ENST00000351487 SSPOA2VEC9 5147 aa7.85□□□□□ -1.15
UPF3A-201ENST00000351487 KRTAP19-4Q3LI73 84 aa7.83□□□□□ -1.16
UPF3A-201ENST00000351487 KRTAP19-6Q3LI70 58 aa7.81□□□□□ -1.16
UPF3A-201ENST00000351487 LCE2DQ5TA82 110 aaPredicted RBP7.8□□□□□ -1.16
UPF3A-201ENST00000351487 FSIP2Q5CZC0 6907 aa7.8□□□□□ -1.16
UPF3A-201ENST00000351487 MT1EP04732 61 aa7.76□□□□□ -1.17
UPF3A-201ENST00000351487 KRTAP9-6A8MVA2 160 aa7.75□□□□□ -1.17
UPF3A-201ENST00000351487 INE1O15225 51 aa7.74□□□□□ -1.17
UPF3A-201ENST00000351487 MT1LQ93083 61 aa7.73□□□□□ -1.17
UPF3A-201ENST00000351487 KRTAP9-2Q9BYQ4 174 aa7.67□□□□□ -1.18
UPF3A-201ENST00000351487 KRTAP4-7Q9BYR0 210 aa7.67□□□□□ -1.18
UPF3A-201ENST00000351487 KRTAP2-3P0C7H8 128 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 106.4 ms