RNA–Protein interactions for RNA: ENST00000336219.3

CDCA4-201, Transcript of cell division cycle associated 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDCA4, Length 2,513 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA4-201ENST00000336219 HSPG2P98160 4391 aa10.31□□□□□ -0.76
CDCA4-201ENST00000336219 LRP1Q07954 4544 aaKnown RBP10.31□□□□□ -0.76
CDCA4-201ENST00000336219 K7ERS5 55 aa10.27□□□□□ -0.77
CDCA4-201ENST00000336219 KRTAP13-4Q3LI77 160 aa10.26□□□□□ -0.77
CDCA4-201ENST00000336219 KRTAP10-6P60371 365 aaPredicted RBP10.25□□□□□ -0.77
CDCA4-201ENST00000336219 KRTAP3-3Q9BYR6 98 aa10.25□□□□□ -0.77
CDCA4-201ENST00000336219 RPL37P61927 97 aaKnown RBP10.24□□□□□ -0.77
CDCA4-201ENST00000336219 DMBT1Q9UGM3 2413 aaPredicted RBP10.23□□□□□ -0.77
CDCA4-201ENST00000336219 A0A0D9SG42 100 aa10.23□□□□□ -0.77
CDCA4-201ENST00000336219 ROMO1P60602 79 aa10.23□□□□□ -0.77
CDCA4-201ENST00000336219 Q5VSD8 79 aa10.23□□□□□ -0.77
CDCA4-201ENST00000336219 MYCBP2O75592 4640 aa10.2□□□□□ -0.78
CDCA4-201ENST00000336219 XP32Q5T750 250 aa10.18□□□□□ -0.78
CDCA4-201ENST00000336219 KRTAP3-2Q9BYR7 98 aa10.15□□□□□ -0.78
CDCA4-201ENST00000336219 RYR3Q15413 4870 aa10.09□□□□□ -0.79
CDCA4-201ENST00000336219 P0C880 135 aa10.06□□□□□ -0.8
CDCA4-201ENST00000336219 S4R3F8 94 aa10.06□□□□□ -0.8
CDCA4-201ENST00000336219 TPRXLQ17RH7 258 aa10.04□□□□□ -0.8
CDCA4-201ENST00000336219 KRTAP17-1Q9BYP8 105 aa10.04□□□□□ -0.8
CDCA4-201ENST00000336219 RYR1P21817 5038 aa10.01□□□□□ -0.81
CDCA4-201ENST00000336219 C10orf95Q9H7T3 257 aa10.01□□□□□ -0.81
CDCA4-201ENST00000336219 LPAP08519 4548 aa9.99□□□□□ -0.81
CDCA4-201ENST00000336219 MT1HL1P0DM35 61 aa9.98□□□□□ -0.81
CDCA4-201ENST00000336219 KRTAP12-2P59991 146 aa9.93□□□□□ -0.82
CDCA4-201ENST00000336219 SPINT4Q6UDR6 99 aa9.87□□□□□ -0.83
CDCA4-201ENST00000336219 KIAA1109Q2LD37 5005 aa9.86□□□□□ -0.83
CDCA4-201ENST00000336219 KRTAP12-1P59990 96 aa9.79□□□□□ -0.84
CDCA4-201ENST00000336219 LRP2P98164 4655 aa9.77□□□□□ -0.85
CDCA4-201ENST00000336219 EPPK1P58107 5090 aaKnown RBP9.74□□□□□ -0.85
CDCA4-201ENST00000336219 KRTAP15-1Q3LI76 137 aa9.63□□□□□ -0.87
CDCA4-201ENST00000336219 M0QZ58 72 aa9.58□□□□□ -0.88
CDCA4-201ENST00000336219 NDUFAF8A1L188 74 aa9.56□□□□□ -0.88
CDCA4-201ENST00000336219 ABCA13Q86UQ4 5058 aa9.53□□□□□ -0.88
CDCA4-201ENST00000336219 KRTAP4-5Q9BYR2 181 aa9.48□□□□□ -0.89
CDCA4-201ENST00000336219 SEC61BP60468 96 aaKnown RBP9.4□□□□□ -0.91
CDCA4-201ENST00000336219 MUC17Q685J3 4493 aa9.37□□□□□ -0.91
CDCA4-201ENST00000336219 R4GN34 69 aa9.37□□□□□ -0.91
CDCA4-201ENST00000336219 LORP23490 312 aaPredicted RBP9.35□□□□□ -0.91
CDCA4-201ENST00000336219 KRTAP4-1Q9BYQ7 146 aa9.3□□□□□ -0.92
CDCA4-201ENST00000336219 BIRC6Q9NR09 4857 aa9.18□□□□□ -0.94
CDCA4-201ENST00000336219 J3QL48 77 aa9.18□□□□□ -0.94
CDCA4-201ENST00000336219 KRTAP19-2Q3LHN2 52 aa9.16□□□□□ -0.94
CDCA4-201ENST00000336219 HERC2O95714 4834 aa9.11□□□□□ -0.95
CDCA4-201ENST00000336219 PLAC4Q8WY50 150 aa9.08□□□□□ -0.96
CDCA4-201ENST00000336219 MUC2Q02817 5179 aa8.97□□□□□ -0.97
CDCA4-201ENST00000336219 PCLOQ9Y6V0 5065 aa8.96□□□□□ -0.98
CDCA4-201ENST00000336219 CAMK2N1Q7Z7J9 78 aa8.94□□□□□ -0.98
CDCA4-201ENST00000336219 FLGP20930 4061 aaPredicted RBP8.86□□□□□ -0.99
CDCA4-201ENST00000336219 HERC1Q15751 4861 aa8.81□□□□□ -1
CDCA4-201ENST00000336219 PP632Q6XCG6 107 aa8.78□□□□□ -1
CDCA4-201ENST00000336219 LUZP6Q538Z0 58 aa8.66□□□□□ -1.02
CDCA4-201ENST00000336219 HMCN2Q8NDA2 5059 aa8.58□□□□□ -1.04
CDCA4-201ENST00000336219 LCE2CQ5TA81 110 aa8.58□□□□□ -1.04
CDCA4-201ENST00000336219 TNP1P09430 55 aa8.57□□□□□ -1.04
CDCA4-201ENST00000336219 A0A0A0MQY5 61 aa8.53□□□□□ -1.04
CDCA4-201ENST00000336219 FAT4Q6V0I7 4981 aa8.5□□□□□ -1.05
CDCA4-201ENST00000336219 KRTAP23-1A1A580 65 aa8.46□□□□□ -1.05
CDCA4-201ENST00000336219 SPRR2GQ9BYE4 73 aa8.46□□□□□ -1.06
CDCA4-201ENST00000336219 KRTAP19-1Q8IUB9 90 aa8.41□□□□□ -1.06
CDCA4-201ENST00000336219 SPRR5A0A1B0GTR4 108 aa8.35□□□□□ -1.07
CDCA4-201ENST00000336219 M0R2T5 61 aa8.35□□□□□ -1.07
CDCA4-201ENST00000336219 MT1HP80294 61 aa8.33□□□□□ -1.08
CDCA4-201ENST00000336219 UBR4Q5T4S7 5183 aa8.32□□□□□ -1.08
CDCA4-201ENST00000336219 RNF213Q63HN8 5207 aa8.29□□□□□ -1.08
CDCA4-201ENST00000336219 MT1FP04733 61 aa8.23□□□□□ -1.09
CDCA4-201ENST00000336219 MT2AP02795 61 aa8.22□□□□□ -1.09
CDCA4-201ENST00000336219 LCE3AQ5TA76 89 aa8.21□□□□□ -1.1
CDCA4-201ENST00000336219 KRTAP10-10P60014 251 aa8.19□□□□□ -1.1
CDCA4-201ENST00000336219 KRTAP9-8Q9BYQ0 159 aa8.17□□□□□ -1.1
CDCA4-201ENST00000336219 KRTAP19-8Q3LI54 63 aa8.08□□□□□ -1.12
CDCA4-201ENST00000336219 MT1BP07438 61 aa7.97□□□□□ -1.13
CDCA4-201ENST00000336219 KRTAP10-5P60370 271 aa7.94□□□□□ -1.14
CDCA4-201ENST00000336219 MT1XP80297 61 aa7.92□□□□□ -1.14
CDCA4-201ENST00000336219 KRTAP8-1Q8IUC2 63 aa7.91□□□□□ -1.14
CDCA4-201ENST00000336219 KRTAP9-3Q9BYQ3 159 aa7.81□□□□□ -1.16
CDCA4-201ENST00000336219 KRTAP10-12P60413 245 aa7.77□□□□□ -1.17
CDCA4-201ENST00000336219 KRTAP12-3P60328 96 aa7.74□□□□□ -1.17
CDCA4-201ENST00000336219 KRTAP10-7P60409 375 aaPredicted RBP7.7□□□□□ -1.18
CDCA4-201ENST00000336219 PRO2289Q9P1D8 64 aa7.6□□□□□ -1.19
CDCA4-201ENST00000336219 LCE2BO14633 110 aa7.49□□□□□ -1.21
CDCA4-201ENST00000336219 INE1O15225 51 aa7.48□□□□□ -1.21
CDCA4-201ENST00000336219 KMT2DO14686 5537 aa7.46□□□□□ -1.21
CDCA4-201ENST00000336219 USH2AO75445 5202 aa7.41□□□□□ -1.22
CDCA4-201ENST00000336219 KRTAP19-5Q3LI72 72 aa7.39□□□□□ -1.23
CDCA4-201ENST00000336219 LCE2AQ5TA79 106 aaPredicted RBP7.32□□□□□ -1.24
CDCA4-201ENST00000336219 LCE3CQ5T5A8 94 aa7.29□□□□□ -1.24
CDCA4-201ENST00000336219 KRTAP4-8A0A0G2JLE6 195 aa7.22□□□□□ -1.25
CDCA4-201ENST00000336219 KRTAP4-8Q9BYQ9 185 aa7.22□□□□□ -1.25
CDCA4-201ENST00000336219 KRTAP9-6A8MVA2 160 aa7.17□□□□□ -1.26
CDCA4-201ENST00000336219 LCE2DQ5TA82 110 aaPredicted RBP7.16□□□□□ -1.26
CDCA4-201ENST00000336219 KRTAP4-7Q9BYR0 210 aa7.07□□□□□ -1.28
CDCA4-201ENST00000336219 KRTAP19-7Q3SYF9 63 aa7.06□□□□□ -1.28
CDCA4-201ENST00000336219 FSIP2Q5CZC0 6907 aa7.03□□□□□ -1.28
CDCA4-201ENST00000336219 KRTAP2-3P0C7H8 128 aa6.87□□□□□ -1.31
CDCA4-201ENST00000336219 KRTAP19-4Q3LI73 84 aa6.87□□□□□ -1.31
CDCA4-201ENST00000336219 KRTAP2-4Q9BYR9 128 aa6.87□□□□□ -1.31
CDCA4-201ENST00000336219 KRTAP2-1Q9BYU5 128 aa6.87□□□□□ -1.31
CDCA4-201ENST00000336219 MT1LQ93083 61 aa6.86□□□□□ -1.31
CDCA4-201ENST00000336219 MT1EP04732 61 aa6.85□□□□□ -1.31
CDCA4-201ENST00000336219 SSPOA2VEC9 5147 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms