RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 SND1-IT1Q9HBX3 110 aa0.68□□□□□ -2.3
LINC00643-201ENST00000334389 SYNE1Q8NF91 8797 aaKnown RBP0.68□□□□□ -2.3
LINC00643-201ENST00000334389 IGKV2D-24A0A075B6R9 120 aa0.68□□□□□ -2.3
LINC00643-201ENST00000334389 IGHV3OR16-13A0A075B7E8 117 aa0.68□□□□□ -2.3
LINC00643-201ENST00000334389 A0A1W2PNM2 257 aa0.68□□□□□ -2.3
LINC00643-201ENST00000334389 SPATA8Q6RVD6 105 aa0.68□□□□□ -2.3
LINC00643-201ENST00000334389 TEX49A0A1B0GTD5 131 aa0.68□□□□□ -2.3
LINC00643-201ENST00000334389 FAM236AA0A1B0GUQ0 79 aa0.68□□□□□ -2.3
LINC00643-201ENST00000334389 FAM236BA0A1B0GV22 79 aa0.68□□□□□ -2.3
LINC00643-201ENST00000334389 A0A1W2PNN7 141 aa0.68□□□□□ -2.3
LINC00643-201ENST00000334389 IGKV4-1P06312 121 aa0.68□□□□□ -2.3
LINC00643-201ENST00000334389 UBE2AP49459 152 aa0.68□□□□□ -2.3
LINC00643-201ENST00000334389 DEFB1P60022 68 aa0.68□□□□□ -2.3
LINC00643-201ENST00000334389 Q8NDZ9 215 aa0.68□□□□□ -2.3
LINC00643-201ENST00000334389 ZNF73O43830 326 aaPredicted RBP0.67□□□□□ -2.3
LINC00643-201ENST00000334389 MGPP08493 103 aa0.67□□□□□ -2.3
LINC00643-201ENST00000334389 COX6A2Q02221 97 aa0.67□□□□□ -2.3
LINC00643-201ENST00000334389 C9orf116Q5BN46 136 aaPredicted RBP0.67□□□□□ -2.3
LINC00643-201ENST00000334389 KRTAP19-3Q7Z4W3 81 aa0.67□□□□□ -2.3
LINC00643-201ENST00000334389 SMIM29Q86T20 159 aa0.67□□□□□ -2.3
LINC00643-201ENST00000334389 PRSS3P2Q8NHM4 247 aa0.67□□□□□ -2.3
LINC00643-201ENST00000334389 CDKN2A-AS1Q9UH64 79 aa0.67□□□□□ -2.3
LINC00643-201ENST00000334389 TRAV23DV6A0A075B6W5 121 aa0.67□□□□□ -2.3
LINC00643-201ENST00000334389 IGKV2-29A2NJV5 120 aaPredicted RBP0.67□□□□□ -2.3
LINC00643-201ENST00000334389 NDUFB1O75438 58 aa0.67□□□□□ -2.3
LINC00643-201ENST00000334389 MT1EP04732 61 aa0.67□□□□□ -2.3
LINC00643-201ENST00000334389 HRCT1Q6UXD1 115 aa0.67□□□□□ -2.3
LINC00643-201ENST00000334389 LINC00575Q6W349 94 aa0.67□□□□□ -2.3
LINC00643-201ENST00000334389 LINC00308Q8TCZ7 52 aa0.67□□□□□ -2.3
LINC00643-201ENST00000334389 IGKV2D-30A0A075B6S6 120 aa0.66□□□□□ -2.3
LINC00643-201ENST00000334389 PRR4Q16378 134 aa0.66□□□□□ -2.3
LINC00643-201ENST00000334389 C1orf137Q5JT78 98 aa0.66□□□□□ -2.3
LINC00643-201ENST00000334389 IGKV2-28A0A075B6P5 120 aa0.66□□□□□ -2.3
LINC00643-201ENST00000334389 HCG22E2RYF7 251 aa0.66□□□□□ -2.3
LINC00643-201ENST00000334389 K7ERJ3 54 aa0.66□□□□□ -2.3
LINC00643-201ENST00000334389 DEFB4AO15263 64 aa0.66□□□□□ -2.3
LINC00643-201ENST00000334389 IGKV2D-28P01615 120 aa0.66□□□□□ -2.3
LINC00643-201ENST00000334389 Q1RN00 199 aa0.66□□□□□ -2.3
LINC00643-201ENST00000334389 UNQ6190/PRO20217Q6UXQ8 127 aa0.66□□□□□ -2.3
LINC00643-201ENST00000334389 NKAPP1Q8N9T2 125 aa0.66□□□□□ -2.3
LINC00643-201ENST00000334389 A8MUN3 132 aa0.66□□□□□ -2.3
LINC00643-201ENST00000334389 COX7BP24311 80 aa0.66□□□□□ -2.3
LINC00643-201ENST00000334389 LINC00313P59037 77 aa0.66□□□□□ -2.3
LINC00643-201ENST00000334389 C10orf25Q5T742 122 aa0.66□□□□□ -2.3
LINC00643-201ENST00000334389 Q96NJ1 140 aa0.66□□□□□ -2.3
LINC00643-201ENST00000334389 TRAV22A0A0B4J277 110 aa0.65□□□□□ -2.31
LINC00643-201ENST00000334389 RPL39P62891 51 aaKnown RBP0.65□□□□□ -2.31
LINC00643-201ENST00000334389 MOBPQ13875 183 aa0.65□□□□□ -2.31
LINC00643-201ENST00000334389 TMEM254Q8TBM7 123 aa0.65□□□□□ -2.31
LINC00643-201ENST00000334389 HIST1H4GQ99525 98 aa0.65□□□□□ -2.31
LINC00643-201ENST00000334389 IGKV3-7A0A075B6H7 116 aa0.65□□□□□ -2.31
LINC00643-201ENST00000334389 IGHV6-1A0A0B4J1U7 121 aa0.65□□□□□ -2.31
LINC00643-201ENST00000334389 A0A0G2JQZ4 141 aa0.65□□□□□ -2.31
LINC00643-201ENST00000334389 HTN3P15516 51 aa0.65□□□□□ -2.31
LINC00643-201ENST00000334389 LCE3AQ5TA76 89 aa0.65□□□□□ -2.31
LINC00643-201ENST00000334389 LINC00472Q9H8W2 130 aa0.65□□□□□ -2.31
LINC00643-201ENST00000334389 H7C2G1 150 aa0.64□□□□□ -2.31
LINC00643-201ENST00000334389 TMEM256-PLSCR3K7ERE1 68 aa0.64□□□□□ -2.31
LINC00643-201ENST00000334389 PRM2P04554 102 aa0.64□□□□□ -2.31
LINC00643-201ENST00000334389 LINC01554Q52M75 96 aa0.64□□□□□ -2.31
LINC00643-201ENST00000334389 MUSTN1Q8IVN3 82 aa0.64□□□□□ -2.31
LINC00643-201ENST00000334389 DSCR8Q96T75 97 aa0.64□□□□□ -2.31
LINC00643-201ENST00000334389 IGHV3-73A0A0B4J1V6 119 aa0.64□□□□□ -2.31
LINC00643-201ENST00000334389 ETDCA0A1B0GVM5 59 aa0.64□□□□□ -2.31
LINC00643-201ENST00000334389 PHGR1C9JFL3 82 aa0.64□□□□□ -2.31
LINC00643-201ENST00000334389 TMSB15BA0A087X1C1 80 aa0.64□□□□□ -2.31
LINC00643-201ENST00000334389 FAM168BA1KXE4 195 aa0.64□□□□□ -2.31
LINC00643-201ENST00000334389 NREPQ16612 68 aa0.64□□□□□ -2.31
LINC00643-201ENST00000334389 HIGD2BQ4VC39 106 aa0.64□□□□□ -2.31
LINC00643-201ENST00000334389 PP632Q6XCG6 107 aa0.64□□□□□ -2.31
LINC00643-201ENST00000334389 MIR7-3HGQ8N6C7 128 aa0.64□□□□□ -2.31
LINC00643-201ENST00000334389 TP53AIP1Q9HCN2 124 aa0.64□□□□□ -2.31
LINC00643-201ENST00000334389 MUC16Q8WXI7 14507 aa0.64□□□□□ -2.31
LINC00643-201ENST00000334389 IGKV3OR2-268A0A0C4DH90 116 aa0.63□□□□□ -2.31
LINC00643-201ENST00000334389 LOC389332A0A1B0GUA5 103 aa0.63□□□□□ -2.31
LINC00643-201ENST00000334389 LECT2O14960 151 aa0.63□□□□□ -2.31
LINC00643-201ENST00000334389 MT1XP80297 61 aa0.63□□□□□ -2.31
LINC00643-201ENST00000334389 COX6B2Q6YFQ2 88 aa0.63□□□□□ -2.31
LINC00643-201ENST00000334389 KRTAP8-1Q8IUC2 63 aa0.63□□□□□ -2.31
LINC00643-201ENST00000334389 C1orf64Q8NEQ6 169 aa0.63□□□□□ -2.31
LINC00643-201ENST00000334389 F8WEM9 126 aa0.63□□□□□ -2.31
LINC00643-201ENST00000334389 MP68P56378 58 aa0.63□□□□□ -2.31
LINC00643-201ENST00000334389 ORMDL1Q9P0S3 153 aa0.63□□□□□ -2.31
LINC00643-201ENST00000334389 BAALC-AS2P0C853 105 aa0.62□□□□□ -2.31
LINC00643-201ENST00000334389 MT4P47944 62 aa0.62□□□□□ -2.31
LINC00643-201ENST00000334389 Q6ZQY7 126 aa0.62□□□□□ -2.31
LINC00643-201ENST00000334389 DMAC1Q96GE9 116 aa0.62□□□□□ -2.31
LINC00643-201ENST00000334389 C14orf132Q9NPU4 83 aa0.62□□□□□ -2.31
LINC00643-201ENST00000334389 ROMO1P60602 79 aa0.62□□□□□ -2.31
LINC00643-201ENST00000334389 CLPSL2Q6UWE3 100 aa0.62□□□□□ -2.31
LINC00643-201ENST00000334389 SMIM11BQ8TCY0 68 aa0.62□□□□□ -2.31
LINC00643-201ENST00000334389 HIGD2AQ9BW72 106 aa0.62□□□□□ -2.31
LINC00643-201ENST00000334389 A0A1B0GVX0 72 aa0.62□□□□□ -2.31
LINC00643-201ENST00000334389 BPY2O14599 106 aa0.62□□□□□ -2.31
LINC00643-201ENST00000334389 HTN1P15515 57 aa0.62□□□□□ -2.31
LINC00643-201ENST00000334389 DSCR10P59022 87 aa0.62□□□□□ -2.31
LINC00643-201ENST00000334389 H1FX-AS1Q4G0G2 97 aa0.62□□□□□ -2.31
LINC00643-201ENST00000334389 PCOTHQ58A44 107 aa0.62□□□□□ -2.31
LINC00643-201ENST00000334389 IGFL1Q6UW32 110 aa0.62□□□□□ -2.31
LINC00643-201ENST00000334389 ST20-AS1Q8NBB2 130 aa0.62□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms