RNA–Protein interactions for RNA: ENST00000331148.5

CLSTN3-202, Transcript of calsyntenin 3, humanhuman

TSL 1 (best)

Gene CLSTN3, Length 2,288 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-202ENST00000331148 HSPG2P98160 4391 aa9.62□□□□□ -0.87
CLSTN3-202ENST00000331148 RYR1P21817 5038 aa9.62□□□□□ -0.87
CLSTN3-202ENST00000331148 BIRC6Q9NR09 4857 aa9.61□□□□□ -0.87
CLSTN3-202ENST00000331148 P0C880 135 aa9.59□□□□□ -0.87
CLSTN3-202ENST00000331148 FLG2Q5D862 2391 aaPredicted RBP9.59□□□□□ -0.87
CLSTN3-202ENST00000331148 EPPK1P58107 5090 aaKnown RBP9.56□□□□□ -0.88
CLSTN3-202ENST00000331148 PKHD1L1Q86WI1 4243 aa9.55□□□□□ -0.88
CLSTN3-202ENST00000331148 KIAA1109Q2LD37 5005 aa9.54□□□□□ -0.88
CLSTN3-202ENST00000331148 KRTAP17-1Q9BYP8 105 aa9.53□□□□□ -0.88
CLSTN3-202ENST00000331148 RPL37P61927 97 aaKnown RBP9.46□□□□□ -0.9
CLSTN3-202ENST00000331148 KRTAP10-8P60410 259 aa9.45□□□□□ -0.9
CLSTN3-202ENST00000331148 TPRXLQ17RH7 258 aa9.42□□□□□ -0.9
CLSTN3-202ENST00000331148 KRTAP10-6P60371 365 aaPredicted RBP9.41□□□□□ -0.9
CLSTN3-202ENST00000331148 LRP1Q07954 4544 aaKnown RBP9.41□□□□□ -0.9
CLSTN3-202ENST00000331148 KRTAP13-4Q3LI77 160 aa9.4□□□□□ -0.9
CLSTN3-202ENST00000331148 SPINT4Q6UDR6 99 aa9.38□□□□□ -0.91
CLSTN3-202ENST00000331148 A0A0D9SG42 100 aa9.36□□□□□ -0.91
CLSTN3-202ENST00000331148 TNXBP22105 4242 aa9.35□□□□□ -0.91
CLSTN3-202ENST00000331148 HERC2O95714 4834 aa9.34□□□□□ -0.91
CLSTN3-202ENST00000331148 FAT3Q8TDW7 4589 aa9.33□□□□□ -0.92
CLSTN3-202ENST00000331148 KRTAP3-3Q9BYR6 98 aa9.32□□□□□ -0.92
CLSTN3-202ENST00000331148 KRTAP3-2Q9BYR7 98 aa9.3□□□□□ -0.92
CLSTN3-202ENST00000331148 C10orf95Q9H7T3 257 aa9.29□□□□□ -0.92
CLSTN3-202ENST00000331148 MT1HL1P0DM35 61 aa9.29□□□□□ -0.92
CLSTN3-202ENST00000331148 KRTAP4-5Q9BYR2 181 aa9.26□□□□□ -0.93
CLSTN3-202ENST00000331148 MYCBP2O75592 4640 aa9.24□□□□□ -0.93
CLSTN3-202ENST00000331148 DMBT1Q9UGM3 2413 aaPredicted RBP9.22□□□□□ -0.93
CLSTN3-202ENST00000331148 KRTAP15-1Q3LI76 137 aa9.22□□□□□ -0.93
CLSTN3-202ENST00000331148 S4R3F8 94 aa9.18□□□□□ -0.94
CLSTN3-202ENST00000331148 NDUFAF8A1L188 74 aa9.17□□□□□ -0.94
CLSTN3-202ENST00000331148 KRTAP12-2P59991 146 aa9.13□□□□□ -0.95
CLSTN3-202ENST00000331148 ABCA13Q86UQ4 5058 aa9.06□□□□□ -0.96
CLSTN3-202ENST00000331148 KRTAP12-1P59990 96 aa9.03□□□□□ -0.96
CLSTN3-202ENST00000331148 J3QL48 77 aa9.02□□□□□ -0.97
CLSTN3-202ENST00000331148 XP32Q5T750 250 aa8.98□□□□□ -0.97
CLSTN3-202ENST00000331148 PCLOQ9Y6V0 5065 aa8.88□□□□□ -0.99
CLSTN3-202ENST00000331148 M0QZ58 72 aa8.83□□□□□ -1
CLSTN3-202ENST00000331148 LPAP08519 4548 aa8.75□□□□□ -1.01
CLSTN3-202ENST00000331148 LRP2P98164 4655 aa8.74□□□□□ -1.01
CLSTN3-202ENST00000331148 SEC61BP60468 96 aaKnown RBP8.63□□□□□ -1.03
CLSTN3-202ENST00000331148 PLAC4Q8WY50 150 aa8.57□□□□□ -1.04
CLSTN3-202ENST00000331148 HERC1Q15751 4861 aa8.53□□□□□ -1.04
CLSTN3-202ENST00000331148 R4GN34 69 aa8.52□□□□□ -1.05
CLSTN3-202ENST00000331148 HMCN2Q8NDA2 5059 aa8.45□□□□□ -1.06
CLSTN3-202ENST00000331148 KRTAP4-1Q9BYQ7 146 aa8.43□□□□□ -1.06
CLSTN3-202ENST00000331148 LUZP6Q538Z0 58 aa8.41□□□□□ -1.06
CLSTN3-202ENST00000331148 A0A0A0MQY5 61 aa8.4□□□□□ -1.06
CLSTN3-202ENST00000331148 MUC17Q685J3 4493 aa8.39□□□□□ -1.07
CLSTN3-202ENST00000331148 LORP23490 312 aaPredicted RBP8.35□□□□□ -1.07
CLSTN3-202ENST00000331148 PP632Q6XCG6 107 aa8.29□□□□□ -1.08
CLSTN3-202ENST00000331148 KRTAP19-2Q3LHN2 52 aa8.21□□□□□ -1.1
CLSTN3-202ENST00000331148 MUC2Q02817 5179 aa8.21□□□□□ -1.1
CLSTN3-202ENST00000331148 CAMK2N1Q7Z7J9 78 aa8.15□□□□□ -1.1
CLSTN3-202ENST00000331148 UBR4Q5T4S7 5183 aa8.06□□□□□ -1.12
CLSTN3-202ENST00000331148 RNF213Q63HN8 5207 aa8.03□□□□□ -1.12
CLSTN3-202ENST00000331148 LCE2CQ5TA81 110 aa7.98□□□□□ -1.13
CLSTN3-202ENST00000331148 FLGP20930 4061 aaPredicted RBP7.96□□□□□ -1.13
CLSTN3-202ENST00000331148 SPRR5A0A1B0GTR4 108 aa7.94□□□□□ -1.14
CLSTN3-202ENST00000331148 TNP1P09430 55 aa7.9□□□□□ -1.15
CLSTN3-202ENST00000331148 KRTAP23-1A1A580 65 aa7.89□□□□□ -1.15
CLSTN3-202ENST00000331148 FAT4Q6V0I7 4981 aa7.86□□□□□ -1.15
CLSTN3-202ENST00000331148 MT1HP80294 61 aa7.81□□□□□ -1.16
CLSTN3-202ENST00000331148 M0R2T5 61 aa7.78□□□□□ -1.16
CLSTN3-202ENST00000331148 LCE2AQ5TA79 106 aaPredicted RBP7.66□□□□□ -1.18
CLSTN3-202ENST00000331148 KRTAP9-8Q9BYQ0 159 aa7.55□□□□□ -1.2
CLSTN3-202ENST00000331148 MT2AP02795 61 aa7.53□□□□□ -1.2
CLSTN3-202ENST00000331148 KRTAP10-10P60014 251 aa7.5□□□□□ -1.21
CLSTN3-202ENST00000331148 MT1FP04733 61 aa7.49□□□□□ -1.21
CLSTN3-202ENST00000331148 PRO2289Q9P1D8 64 aa7.48□□□□□ -1.21
CLSTN3-202ENST00000331148 LCE3AQ5TA76 89 aa7.45□□□□□ -1.22
CLSTN3-202ENST00000331148 SPRR2GQ9BYE4 73 aa7.44□□□□□ -1.22
CLSTN3-202ENST00000331148 KRTAP19-1Q8IUB9 90 aa7.41□□□□□ -1.22
CLSTN3-202ENST00000331148 INE1O15225 51 aa7.34□□□□□ -1.23
CLSTN3-202ENST00000331148 KRTAP9-3Q9BYQ3 159 aa7.26□□□□□ -1.25
CLSTN3-202ENST00000331148 LCE2DQ5TA82 110 aaPredicted RBP7.26□□□□□ -1.25
CLSTN3-202ENST00000331148 KRTAP8-1Q8IUC2 63 aa7.25□□□□□ -1.25
CLSTN3-202ENST00000331148 KRTAP19-8Q3LI54 63 aa7.22□□□□□ -1.25
CLSTN3-202ENST00000331148 MT1BP07438 61 aa7.12□□□□□ -1.27
CLSTN3-202ENST00000331148 KRTAP9-2Q9BYQ4 174 aa7.06□□□□□ -1.28
CLSTN3-202ENST00000331148 KRTAP12-3P60328 96 aa7.06□□□□□ -1.28
CLSTN3-202ENST00000331148 LCE2BO14633 110 aa7.04□□□□□ -1.28
CLSTN3-202ENST00000331148 KRTAP10-5P60370 271 aa7.01□□□□□ -1.29
CLSTN3-202ENST00000331148 KRTAP10-12P60413 245 aa7.01□□□□□ -1.29
CLSTN3-202ENST00000331148 MT1XP80297 61 aa6.98□□□□□ -1.29
CLSTN3-202ENST00000331148 USH2AO75445 5202 aa6.84□□□□□ -1.32
CLSTN3-202ENST00000331148 KRTAP10-7P60409 375 aaPredicted RBP6.83□□□□□ -1.32
CLSTN3-202ENST00000331148 CRCT1Q9UGL9 99 aa6.79□□□□□ -1.32
CLSTN3-202ENST00000331148 KRTAP9-6A0A140TA67 174 aa6.75□□□□□ -1.33
CLSTN3-202ENST00000331148 LCE3CQ5T5A8 94 aa6.67□□□□□ -1.34
CLSTN3-202ENST00000331148 KRTAP19-6Q3LI70 58 aa6.66□□□□□ -1.34
CLSTN3-202ENST00000331148 KRTAP19-5Q3LI72 72 aa6.62□□□□□ -1.35
CLSTN3-202ENST00000331148 SSPOA2VEC9 5147 aa6.59□□□□□ -1.35
CLSTN3-202ENST00000331148 FSIP2Q5CZC0 6907 aa6.55□□□□□ -1.36
CLSTN3-202ENST00000331148 KRTAP9-6A8MVA2 160 aa6.5□□□□□ -1.37
CLSTN3-202ENST00000331148 KRTAP2-3P0C7H8 128 aa6.43□□□□□ -1.38
CLSTN3-202ENST00000331148 KRTAP2-4Q9BYR9 128 aa6.43□□□□□ -1.38
CLSTN3-202ENST00000331148 KRTAP2-1Q9BYU5 128 aa6.43□□□□□ -1.38
CLSTN3-202ENST00000331148 KRTAP4-8A0A0G2JLE6 195 aa6.38□□□□□ -1.39
CLSTN3-202ENST00000331148 KRTAP4-8Q9BYQ9 185 aa6.38□□□□□ -1.39
CLSTN3-202ENST00000331148 KMT2DO14686 5537 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms