RNA–Protein interactions for RNA: ENST00000330503.11

DDX41-201, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 2,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-201ENST00000330503 A0A1B0GU69 56 aa8.58□□□□□ -1.04
DDX41-201ENST00000330503 SEC61BP60468 96 aaKnown RBP8.55□□□□□ -1.04
DDX41-201ENST00000330503 PCLOQ9Y6V0 5065 aa8.54□□□□□ -1.04
DDX41-201ENST00000330503 A6NED7 52 aa8.53□□□□□ -1.04
DDX41-201ENST00000330503 KRTAP3-3Q9BYR6 98 aa8.53□□□□□ -1.04
DDX41-201ENST00000330503 A8MU10 97 aa8.52□□□□□ -1.05
DDX41-201ENST00000330503 LCA10Q71F78 164 aa8.51□□□□□ -1.05
DDX41-201ENST00000330503 MUC17Q685J3 4493 aa8.5□□□□□ -1.05
DDX41-201ENST00000330503 H1FX-AS1Q4G0G2 97 aa8.5□□□□□ -1.05
DDX41-201ENST00000330503 KRTAP4-1Q9BYQ7 146 aa8.5□□□□□ -1.05
DDX41-201ENST00000330503 S4R3F8 94 aa8.47□□□□□ -1.05
DDX41-201ENST00000330503 RBM12B-AS1Q9P1G2 102 aa8.47□□□□□ -1.05
DDX41-201ENST00000330503 HERC1Q15751 4861 aa8.45□□□□□ -1.06
DDX41-201ENST00000330503 CDC42SE1Q9NRR8 79 aa8.42□□□□□ -1.06
DDX41-201ENST00000330503 HMCN2Q8NDA2 5059 aa8.39□□□□□ -1.07
DDX41-201ENST00000330503 UQCR11O14957 56 aa8.35□□□□□ -1.07
DDX41-201ENST00000330503 SPATA8Q6RVD6 105 aa8.34□□□□□ -1.07
DDX41-201ENST00000330503 MIR22HGQ0VDD5 57 aa8.3□□□□□ -1.08
DDX41-201ENST00000330503 KRTAP19-2Q3LHN2 52 aa8.3□□□□□ -1.08
DDX41-201ENST00000330503 KRTAP3-2Q9BYR7 98 aa8.29□□□□□ -1.08
DDX41-201ENST00000330503 KRTAP10-6P60371 365 aaPredicted RBP8.29□□□□□ -1.08
DDX41-201ENST00000330503 A0A1B0GU33 70 aa8.28□□□□□ -1.08
DDX41-201ENST00000330503 CSAG1Q6PB30 78 aa8.25□□□□□ -1.09
DDX41-201ENST00000330503 PMAIP1Q13794 54 aa8.24□□□□□ -1.09
DDX41-201ENST00000330503 H0YAA0 97 aa8.22□□□□□ -1.09
DDX41-201ENST00000330503 MUC2Q02817 5179 aa8.19□□□□□ -1.1
DDX41-201ENST00000330503 P0C880 135 aa8.18□□□□□ -1.1
DDX41-201ENST00000330503 ADM2Q7Z4H4 148 aa8.16□□□□□ -1.1
DDX41-201ENST00000330503 A6NN06 94 aa8.11□□□□□ -1.11
DDX41-201ENST00000330503 KRTAP13-4Q3LI77 160 aa8.11□□□□□ -1.11
DDX41-201ENST00000330503 FLGP20930 4061 aaPredicted RBP8.09□□□□□ -1.11
DDX41-201ENST00000330503 LCE2CQ5TA81 110 aa8.01□□□□□ -1.13
DDX41-201ENST00000330503 KTN1-AS1Q86SY8 53 aa7.99□□□□□ -1.13
DDX41-201ENST00000330503 RNF213Q63HN8 5207 aa7.98□□□□□ -1.13
DDX41-201ENST00000330503 UBR4Q5T4S7 5183 aa7.97□□□□□ -1.13
DDX41-201ENST00000330503 A0A0D9SG42 100 aa7.94□□□□□ -1.14
DDX41-201ENST00000330503 M0QZ58 72 aa7.91□□□□□ -1.14
DDX41-201ENST00000330503 LORP23490 312 aaPredicted RBP7.9□□□□□ -1.15
DDX41-201ENST00000330503 H3BS24 57 aa7.87□□□□□ -1.15
DDX41-201ENST00000330503 FAT4Q6V0I7 4981 aa7.82□□□□□ -1.16
DDX41-201ENST00000330503 K7ERS5 55 aa7.81□□□□□ -1.16
DDX41-201ENST00000330503 R4GN34 69 aa7.81□□□□□ -1.16
DDX41-201ENST00000330503 MT1HP80294 61 aa7.79□□□□□ -1.16
DDX41-201ENST00000330503 KRTAP12-2P59991 146 aa7.78□□□□□ -1.16
DDX41-201ENST00000330503 KRTAP12-1P59990 96 aa7.77□□□□□ -1.17
DDX41-201ENST00000330503 LINC01554Q52M75 96 aa7.72□□□□□ -1.17
DDX41-201ENST00000330503 SPINT4Q6UDR6 99 aa7.71□□□□□ -1.18
DDX41-201ENST00000330503 M0R2T5 61 aa7.69□□□□□ -1.18
DDX41-201ENST00000330503 PRAC1Q96KF2 57 aa7.67□□□□□ -1.18
DDX41-201ENST00000330503 CRIPTQ9P021 101 aa7.63□□□□□ -1.19
DDX41-201ENST00000330503 ROMO1P60602 79 aa7.6□□□□□ -1.19
DDX41-201ENST00000330503 KRTAP9-8Q9BYQ0 159 aa7.56□□□□□ -1.2
DDX41-201ENST00000330503 MT2AP02795 61 aa7.55□□□□□ -1.2
DDX41-201ENST00000330503 MT1FP04733 61 aa7.52□□□□□ -1.21
DDX41-201ENST00000330503 A0A0A0MQY5 61 aa7.51□□□□□ -1.21
DDX41-201ENST00000330503 SPRR2GQ9BYE4 73 aa7.48□□□□□ -1.21
DDX41-201ENST00000330503 KRTAP19-1Q8IUB9 90 aa7.48□□□□□ -1.21
DDX41-201ENST00000330503 KRTAP10-10P60014 251 aa7.47□□□□□ -1.21
DDX41-201ENST00000330503 KRTAP25-1Q3LHN0 102 aa7.4□□□□□ -1.23
DDX41-201ENST00000330503 C10orf95Q9H7T3 257 aa7.37□□□□□ -1.23
DDX41-201ENST00000330503 CAMK2N1Q7Z7J9 78 aa7.33□□□□□ -1.24
DDX41-201ENST00000330503 LCE2AQ5TA79 106 aaPredicted RBP7.32□□□□□ -1.24
DDX41-201ENST00000330503 KRTAP9-3Q9BYQ3 159 aa7.28□□□□□ -1.24
DDX41-201ENST00000330503 KRTAP19-8Q3LI54 63 aa7.25□□□□□ -1.25
DDX41-201ENST00000330503 PLAC4Q8WY50 150 aa7.25□□□□□ -1.25
DDX41-201ENST00000330503 MT1BP07438 61 aa7.17□□□□□ -1.26
DDX41-201ENST00000330503 LCE2BO14633 110 aa7.05□□□□□ -1.28
DDX41-201ENST00000330503 TNP1P09430 55 aa7.01□□□□□ -1.29
DDX41-201ENST00000330503 KRTAP10-5P60370 271 aa6.98□□□□□ -1.29
DDX41-201ENST00000330503 MT1XP80297 61 aa6.98□□□□□ -1.29
DDX41-201ENST00000330503 PP632Q6XCG6 107 aa6.9□□□□□ -1.3
DDX41-201ENST00000330503 KRTAP23-1A1A580 65 aa6.86□□□□□ -1.31
DDX41-201ENST00000330503 USH2AO75445 5202 aa6.82□□□□□ -1.32
DDX41-201ENST00000330503 PRO2289Q9P1D8 64 aa6.77□□□□□ -1.33
DDX41-201ENST00000330503 LCE3AQ5TA76 89 aa6.74□□□□□ -1.33
DDX41-201ENST00000330503 KRTAP10-7P60409 375 aaPredicted RBP6.74□□□□□ -1.33
DDX41-201ENST00000330503 KRTAP10-12P60413 245 aa6.64□□□□□ -1.35
DDX41-201ENST00000330503 KRTAP15-1Q3LI76 137 aa6.64□□□□□ -1.35
DDX41-201ENST00000330503 KRTAP8-1Q8IUC2 63 aa6.59□□□□□ -1.35
DDX41-201ENST00000330503 SSPOA2VEC9 5147 aa6.56□□□□□ -1.36
DDX41-201ENST00000330503 LCE2DQ5TA82 110 aaPredicted RBP6.53□□□□□ -1.36
DDX41-201ENST00000330503 KRTAP19-6Q3LI70 58 aa6.51□□□□□ -1.37
DDX41-201ENST00000330503 NDUFAF8A1L188 74 aa6.47□□□□□ -1.37
DDX41-201ENST00000330503 KRTAP12-3P60328 96 aa6.44□□□□□ -1.38
DDX41-201ENST00000330503 KRTAP4-8A0A0G2JLE6 195 aa6.43□□□□□ -1.38
DDX41-201ENST00000330503 KRTAP4-8Q9BYQ9 185 aa6.43□□□□□ -1.38
DDX41-201ENST00000330503 KMT2DO14686 5537 aa6.4□□□□□ -1.38
DDX41-201ENST00000330503 FSIP2Q5CZC0 6907 aa6.39□□□□□ -1.39
DDX41-201ENST00000330503 KRTAP19-5Q3LI72 72 aa6.37□□□□□ -1.39
DDX41-201ENST00000330503 LUZP6Q538Z0 58 aa6.29□□□□□ -1.4
DDX41-201ENST00000330503 SPRR5A0A1B0GTR4 108 aa6.29□□□□□ -1.4
DDX41-201ENST00000330503 KRTAP19-7Q3SYF9 63 aa6.24□□□□□ -1.41
DDX41-201ENST00000330503 FCGBPQ9Y6R7 5405 aaPredicted RBP6.24□□□□□ -1.41
DDX41-201ENST00000330503 KRTAP9-2Q9BYQ4 174 aa6.16□□□□□ -1.42
DDX41-201ENST00000330503 MT1EP04732 61 aa6.1□□□□□ -1.43
DDX41-201ENST00000330503 LCE3CQ5T5A8 94 aa6.05□□□□□ -1.44
DDX41-201ENST00000330503 MT1LQ93083 61 aa6.01□□□□□ -1.45
DDX41-201ENST00000330503 CRCT1Q9UGL9 99 aa5.98□□□□□ -1.45
DDX41-201ENST00000330503 KRTAP4-7Q9BYR0 210 aa5.92□□□□□ -1.46
DDX41-201ENST00000330503 KRTAP19-4Q3LI73 84 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms