RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 KRTAP13-2Q52LG2 175 aa6.37□□□□□ -1.39
SHMT2-201ENST00000328923 PKHD1P08F94 4074 aa6.37□□□□□ -1.39
SHMT2-201ENST00000328923 RPL37P61927 97 aaKnown RBP6.36□□□□□ -1.39
SHMT2-201ENST00000328923 KRTAP10-1P60331 282 aa6.34□□□□□ -1.39
SHMT2-201ENST00000328923 RYR1P21817 5038 aa6.34□□□□□ -1.39
SHMT2-201ENST00000328923 VPS13BQ7Z7G8 4022 aa6.34□□□□□ -1.39
SHMT2-201ENST00000328923 A0A0D9SG42 100 aa6.32□□□□□ -1.4
SHMT2-201ENST00000328923 KRTAP3-1Q9BYR8 98 aa6.3□□□□□ -1.4
SHMT2-201ENST00000328923 A0A1B0GVY2 172 aa6.27□□□□□ -1.41
SHMT2-201ENST00000328923 KRTAP13-4Q3LI77 160 aa6.27□□□□□ -1.41
SHMT2-201ENST00000328923 KRTAP1-4P0C5Y4 121 aa6.25□□□□□ -1.41
SHMT2-201ENST00000328923 SEC61BP60468 96 aaKnown RBP6.24□□□□□ -1.41
SHMT2-201ENST00000328923 ABCA13Q86UQ4 5058 aa6.23□□□□□ -1.41
SHMT2-201ENST00000328923 DYNC1H1Q14204 4646 aaKnown RBP6.22□□□□□ -1.41
SHMT2-201ENST00000328923 RPS29P62273 56 aaKnown RBP6.2□□□□□ -1.42
SHMT2-201ENST00000328923 KRTAP4-5Q9BYR2 181 aa6.19□□□□□ -1.42
SHMT2-201ENST00000328923 FAT1Q14517 4588 aa6.18□□□□□ -1.42
SHMT2-201ENST00000328923 HSPG2P98160 4391 aa6.17□□□□□ -1.42
SHMT2-201ENST00000328923 KRTAP10-6P60371 365 aaPredicted RBP6.16□□□□□ -1.42
SHMT2-201ENST00000328923 APOBP04114 4563 aaKnown RBP6.15□□□□□ -1.42
SHMT2-201ENST00000328923 S4R3F8 94 aa6.15□□□□□ -1.42
SHMT2-201ENST00000328923 KRTAP12-2P59991 146 aa6.11□□□□□ -1.43
SHMT2-201ENST00000328923 KRTAP3-2Q9BYR7 98 aa6.1□□□□□ -1.43
SHMT2-201ENST00000328923 SMR3BP02814 79 aaPredicted RBP6.1□□□□□ -1.43
SHMT2-201ENST00000328923 XP32Q5T750 250 aa6.09□□□□□ -1.43
SHMT2-201ENST00000328923 KRTAP10-4P60372 401 aaPredicted RBP6.04□□□□□ -1.44
SHMT2-201ENST00000328923 PLAC4Q8WY50 150 aa6.04□□□□□ -1.44
SHMT2-201ENST00000328923 HERC1Q15751 4861 aa6.04□□□□□ -1.44
SHMT2-201ENST00000328923 PKHD1L1Q86WI1 4243 aa5.99□□□□□ -1.45
SHMT2-201ENST00000328923 C9orf92A6NGG3 77 aa5.98□□□□□ -1.45
SHMT2-201ENST00000328923 KRTAP12-1P59990 96 aa5.98□□□□□ -1.45
SHMT2-201ENST00000328923 LRP1Q07954 4544 aaKnown RBP5.97□□□□□ -1.45
SHMT2-201ENST00000328923 MYCBP2O75592 4640 aa5.96□□□□□ -1.45
SHMT2-201ENST00000328923 KRTAP3-3Q9BYR6 98 aa5.96□□□□□ -1.46
SHMT2-201ENST00000328923 Q5VSD8 79 aa5.94□□□□□ -1.46
SHMT2-201ENST00000328923 J3QL48 77 aa5.84□□□□□ -1.47
SHMT2-201ENST00000328923 TNXBP22105 4242 aa5.81□□□□□ -1.48
SHMT2-201ENST00000328923 FAT3Q8TDW7 4589 aa5.8□□□□□ -1.48
SHMT2-201ENST00000328923 KRTAP10-8P60410 259 aa5.79□□□□□ -1.48
SHMT2-201ENST00000328923 CAMK2N1Q7Z7J9 78 aa5.78□□□□□ -1.48
SHMT2-201ENST00000328923 HMCN2Q8NDA2 5059 aa5.71□□□□□ -1.5
SHMT2-201ENST00000328923 UBR4Q5T4S7 5183 aa5.7□□□□□ -1.5
SHMT2-201ENST00000328923 LPAP08519 4548 aa5.7□□□□□ -1.5
SHMT2-201ENST00000328923 MT1HL1P0DM35 61 aa5.69□□□□□ -1.5
SHMT2-201ENST00000328923 M0QZ58 72 aa5.67□□□□□ -1.5
SHMT2-201ENST00000328923 PRO2289Q9P1D8 64 aa5.66□□□□□ -1.5
SHMT2-201ENST00000328923 LRP2P98164 4655 aa5.59□□□□□ -1.51
SHMT2-201ENST00000328923 RNF213Q63HN8 5207 aa5.52□□□□□ -1.53
SHMT2-201ENST00000328923 PP632Q6XCG6 107 aa5.48□□□□□ -1.53
SHMT2-201ENST00000328923 R4GN34 69 aa5.47□□□□□ -1.53
SHMT2-201ENST00000328923 SPRR5A0A1B0GTR4 108 aa5.45□□□□□ -1.54
SHMT2-201ENST00000328923 MUC2Q02817 5179 aa5.37□□□□□ -1.55
SHMT2-201ENST00000328923 INE1O15225 51 aa5.36□□□□□ -1.55
SHMT2-201ENST00000328923 LORP23490 312 aaPredicted RBP5.29□□□□□ -1.56
SHMT2-201ENST00000328923 MUC17Q685J3 4493 aa5.24□□□□□ -1.57
SHMT2-201ENST00000328923 KRTAP4-1Q9BYQ7 146 aa5.2□□□□□ -1.58
SHMT2-201ENST00000328923 KRTAP23-1A1A580 65 aa5.15□□□□□ -1.58
SHMT2-201ENST00000328923 KRTAP9-2Q9BYQ4 174 aa5.15□□□□□ -1.58
SHMT2-201ENST00000328923 FAT4Q6V0I7 4981 aa5.11□□□□□ -1.59
SHMT2-201ENST00000328923 TNP1P09430 55 aa5.09□□□□□ -1.59
SHMT2-201ENST00000328923 LCE2AQ5TA79 106 aaPredicted RBP5.09□□□□□ -1.59
SHMT2-201ENST00000328923 KRTAP19-2Q3LHN2 52 aa5.08□□□□□ -1.6
SHMT2-201ENST00000328923 KRTAP9-6A0A140TA67 174 aa5.03□□□□□ -1.6
SHMT2-201ENST00000328923 FLGP20930 4061 aaPredicted RBP4.95□□□□□ -1.62
SHMT2-201ENST00000328923 LCE2CQ5TA81 110 aa4.91□□□□□ -1.62
SHMT2-201ENST00000328923 FSIP2Q5CZC0 6907 aa4.9□□□□□ -1.62
SHMT2-201ENST00000328923 LCE2DQ5TA82 110 aaPredicted RBP4.86□□□□□ -1.63
SHMT2-201ENST00000328923 CRCT1Q9UGL9 99 aa4.83□□□□□ -1.64
SHMT2-201ENST00000328923 LCE3AQ5TA76 89 aa4.81□□□□□ -1.64
SHMT2-201ENST00000328923 MT1HP80294 61 aa4.79□□□□□ -1.64
SHMT2-201ENST00000328923 M0R2T5 61 aa4.74□□□□□ -1.65
SHMT2-201ENST00000328923 KRTAP10-10P60014 251 aa4.72□□□□□ -1.65
SHMT2-201ENST00000328923 SPRR2GQ9BYE4 73 aa4.71□□□□□ -1.66
SHMT2-201ENST00000328923 KRTAP8-1Q8IUC2 63 aa4.64□□□□□ -1.67
SHMT2-201ENST00000328923 KRTAP10-12P60413 245 aa4.63□□□□□ -1.67
SHMT2-201ENST00000328923 KRTAP9-8Q9BYQ0 159 aa4.63□□□□□ -1.67
SHMT2-201ENST00000328923 MT2AP02795 61 aa4.62□□□□□ -1.67
SHMT2-201ENST00000328923 KRTAP19-1Q8IUB9 90 aa4.62□□□□□ -1.67
SHMT2-201ENST00000328923 MT1FP04733 61 aa4.61□□□□□ -1.67
SHMT2-201ENST00000328923 KRTAP9-7A8MTY7 169 aa4.51□□□□□ -1.69
SHMT2-201ENST00000328923 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.51□□□□□ -1.69
SHMT2-201ENST00000328923 KRTAP12-3P60328 96 aa4.49□□□□□ -1.69
SHMT2-201ENST00000328923 USH2AO75445 5202 aa4.49□□□□□ -1.69
SHMT2-201ENST00000328923 SSPOA2VEC9 5147 aa4.48□□□□□ -1.69
SHMT2-201ENST00000328923 KRTAP19-8Q3LI54 63 aa4.46□□□□□ -1.7
SHMT2-201ENST00000328923 KRTAP9-3Q9BYQ3 159 aa4.45□□□□□ -1.7
SHMT2-201ENST00000328923 FCGBPQ9Y6R7 5405 aaPredicted RBP4.41□□□□□ -1.7
SHMT2-201ENST00000328923 MT1BP07438 61 aa4.41□□□□□ -1.7
SHMT2-201ENST00000328923 KRTAP10-5P60370 271 aa4.4□□□□□ -1.71
SHMT2-201ENST00000328923 MT1XP80297 61 aa4.38□□□□□ -1.71
SHMT2-201ENST00000328923 LCE2BO14633 110 aa4.36□□□□□ -1.71
SHMT2-201ENST00000328923 KMT2DO14686 5537 aa4.35□□□□□ -1.71
SHMT2-201ENST00000328923 MACF1Q9UPN3 7388 aaKnown RBP4.33□□□□□ -1.72
SHMT2-201ENST00000328923 SYNE2Q8WXH0 6885 aaKnown RBP4.33□□□□□ -1.72
SHMT2-201ENST00000328923 KRTAP2-3P0C7H8 128 aa4.29□□□□□ -1.72
SHMT2-201ENST00000328923 KRTAP2-4Q9BYR9 128 aa4.29□□□□□ -1.72
SHMT2-201ENST00000328923 KRTAP2-1Q9BYU5 128 aa4.29□□□□□ -1.72
SHMT2-201ENST00000328923 KRTAP9-6A8MVA2 160 aa4.27□□□□□ -1.73
SHMT2-201ENST00000328923 LCE3CQ5T5A8 94 aa4.27□□□□□ -1.73
SHMT2-201ENST00000328923 KRTAP10-7P60409 375 aaPredicted RBP4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms