RNA–Protein interactions for RNA: ENST00000324771.12

DDR1-223, Transcript of discoidin domain receptor tyrosine kinase 1, human

APPRIS ALT2 TSL 5 BASIC

Gene DDR1, Length 4,148 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDR1-223	ENST00000324771	KRTAP4-5	Q9BYR2	181 aa		6	□□□□□ -1.45
DDR1-223	ENST00000324771	KRTAP10-4	P60372	401 aa	Predicted RBP	5.97	□□□□□ -1.45
DDR1-223	ENST00000324771	FRAS1	Q86XX4	4008 aa		5.97	□□□□□ -1.45
DDR1-223	ENST00000324771	DYNC1H1	Q14204	4646 aa	Known RBP	5.95	□□□□□ -1.46
DDR1-223	ENST00000324771	MYCBP2	O75592	4640 aa		5.94	□□□□□ -1.46
DDR1-223	ENST00000324771	KIAA1109	Q2LD37	5005 aa		5.93	□□□□□ -1.46
DDR1-223	ENST00000324771	MT1HL1	P0DM35	61 aa		5.93	□□□□□ -1.46
DDR1-223	ENST00000324771	DNAH2	Q9P225	4427 aa		5.92	□□□□□ -1.46
DDR1-223	ENST00000324771	RYR1	P21817	5038 aa		5.92	□□□□□ -1.46
DDR1-223	ENST00000324771	DNAH17	Q9UFH2	4485 aa		5.91	□□□□□ -1.46
DDR1-223	ENST00000324771	DNAH6	Q9C0G6	4158 aa		5.87	□□□□□ -1.47
DDR1-223	ENST00000324771	PLAC4	Q8WY50	150 aa		5.87	□□□□□ -1.47
DDR1-223	ENST00000324771	FAT3	Q8TDW7	4589 aa		5.79	□□□□□ -1.48
DDR1-223	ENST00000324771	HYDIN	Q4G0P3	5121 aa		5.78	□□□□□ -1.48
DDR1-223	ENST00000324771	VPS13B	Q7Z7G8	4022 aa		5.78	□□□□□ -1.48
DDR1-223	ENST00000324771	SACS	Q9NZJ4	4579 aa		5.77	□□□□□ -1.49
DDR1-223	ENST00000324771	RYR3	Q15413	4870 aa		5.77	□□□□□ -1.49
DDR1-223	ENST00000324771	LRP1	Q07954	4544 aa	Known RBP	5.76	□□□□□ -1.49
DDR1-223	ENST00000324771	KRTAP13-4	Q3LI77	160 aa		5.76	□□□□□ -1.49
DDR1-223	ENST00000324771	DYNC2H1	Q8NCM8	4307 aa	Known RBP	5.75	□□□□□ -1.49
DDR1-223	ENST00000324771	KRTAP12-2	P59991	146 aa		5.73	□□□□□ -1.49
DDR1-223	ENST00000324771	ALMS1	Q8TCU4	4167 aa		5.73	□□□□□ -1.49
DDR1-223	ENST00000324771	KRTAP10-10	P60014	251 aa		5.73	□□□□□ -1.49
DDR1-223	ENST00000324771	HECTD4	Q9Y4D8	3996 aa		5.72	□□□□□ -1.49
DDR1-223	ENST00000324771	KRTAP10-6	P60371	365 aa	Predicted RBP	5.72	□□□□□ -1.49
DDR1-223	ENST00000324771	PKHD1	P08F94	4074 aa		5.7	□□□□□ -1.5
DDR1-223	ENST00000324771	APOB	P04114	4563 aa	Known RBP	5.69	□□□□□ -1.5
DDR1-223	ENST00000324771	KRTAP3-3	Q9BYR6	98 aa		5.67	□□□□□ -1.5
DDR1-223	ENST00000324771	TNP1	P09430	55 aa		5.64	□□□□□ -1.51
DDR1-223	ENST00000324771	FAT2	Q9NYQ8	4349 aa		5.64	□□□□□ -1.51
DDR1-223	ENST00000324771	KMT2C	Q8NEZ4	4911 aa	Known RBP	5.63	□□□□□ -1.51
DDR1-223	ENST00000324771	KRTAP12-1	P59990	96 aa		5.63	□□□□□ -1.51
DDR1-223	ENST00000324771	KRTAP17-1	Q9BYP8	105 aa		5.61	□□□□□ -1.51
DDR1-223	ENST00000324771	KRTAP3-2	Q9BYR7	98 aa		5.59	□□□□□ -1.51
DDR1-223	ENST00000324771	KRTAP15-1	Q3LI76	137 aa		5.58	□□□□□ -1.52
DDR1-223	ENST00000324771	RYR2	Q92736	4967 aa		5.53	□□□□□ -1.52
DDR1-223	ENST00000324771	LRP2	P98164	4655 aa		5.5	□□□□□ -1.53
DDR1-223	ENST00000324771	LOR	P23490	312 aa	Predicted RBP	5.46	□□□□□ -1.53
DDR1-223	ENST00000324771	KRTAP4-1	Q9BYQ7	146 aa		5.46	□□□□□ -1.54
DDR1-223	ENST00000324771	HERC2	O95714	4834 aa		5.44	□□□□□ -1.54
DDR1-223	ENST00000324771	PKD1	P98161	4303 aa		5.37	□□□□□ -1.55
DDR1-223	ENST00000324771	PP632	Q6XCG6	107 aa		5.35	□□□□□ -1.55
DDR1-223	ENST00000324771	HSPG2	P98160	4391 aa		5.31	□□□□□ -1.56
DDR1-223	ENST00000324771	EPPK1	P58107	5090 aa	Known RBP	5.31	□□□□□ -1.56
DDR1-223	ENST00000324771	LPA	P08519	4548 aa		5.26	□□□□□ -1.57
DDR1-223	ENST00000324771	PRO2289	Q9P1D8	64 aa		5.22	□□□□□ -1.57
DDR1-223	ENST00000324771	PCLO	Q9Y6V0	5065 aa		5.2	□□□□□ -1.58
DDR1-223	ENST00000324771	ABCA13	Q86UQ4	5058 aa		5.17	□□□□□ -1.58
DDR1-223	ENST00000324771	PKHD1L1	Q86WI1	4243 aa		5.1	□□□□□ -1.59
DDR1-223	ENST00000324771	BIRC6	Q9NR09	4857 aa		5.1	□□□□□ -1.59
DDR1-223	ENST00000324771	MUC2	Q02817	5179 aa		5.08	□□□□□ -1.6
DDR1-223	ENST00000324771	MT1H	P80294	61 aa		5.04	□□□□□ -1.6
DDR1-223	ENST00000324771	RNF213	Q63HN8	5207 aa		5.03	□□□□□ -1.6
DDR1-223	ENST00000324771	HERC1	Q15751	4861 aa		5.02	□□□□□ -1.61
DDR1-223	ENST00000324771	TNXB	P22105	4242 aa		4.97	□□□□□ -1.61
DDR1-223	ENST00000324771	MT2A	P02795	61 aa		4.97	□□□□□ -1.61
DDR1-223	ENST00000324771	MT1F	P04733	61 aa		4.96	□□□□□ -1.62
DDR1-223	ENST00000324771	LCE3A	Q5TA76	89 aa		4.95	□□□□□ -1.62
DDR1-223	ENST00000324771	FSIP2	Q5CZC0	6907 aa		4.95	□□□□□ -1.62
DDR1-223	ENST00000324771	KRTAP10-12	P60413	245 aa		4.95	□□□□□ -1.62
DDR1-223	ENST00000324771	FAT4	Q6V0I7	4981 aa		4.91	□□□□□ -1.62
DDR1-223	ENST00000324771	UBR4	Q5T4S7	5183 aa		4.89	□□□□□ -1.63
DDR1-223	ENST00000324771	KRTAP12-3	P60328	96 aa		4.85	□□□□□ -1.63
DDR1-223	ENST00000324771	SPRR2G	Q9BYE4	73 aa		4.82	□□□□□ -1.64
DDR1-223	ENST00000324771	INE1	O15225	51 aa		4.81	□□□□□ -1.64
DDR1-223	ENST00000324771	KRTAP19-1	Q8IUB9	90 aa		4.8	□□□□□ -1.64
DDR1-223	ENST00000324771	CRCT1	Q9UGL9	99 aa		4.78	□□□□□ -1.64
DDR1-223	ENST00000324771	LCE2C	Q5TA81	110 aa		4.78	□□□□□ -1.64
DDR1-223	ENST00000324771	MUC17	Q685J3	4493 aa		4.73	□□□□□ -1.65
DDR1-223	ENST00000324771	KRTAP19-2	Q3LHN2	52 aa		4.7	□□□□□ -1.66
DDR1-223	ENST00000324771	KRTAP9-8	Q9BYQ0	159 aa		4.67	□□□□□ -1.66
DDR1-223	ENST00000324771	HMCN2	Q8NDA2	5059 aa		4.64	□□□□□ -1.67
DDR1-223	ENST00000324771	FLG	P20930	4061 aa	Predicted RBP	4.64	□□□□□ -1.67
DDR1-223	ENST00000324771	KRTAP23-1	A1A580	65 aa		4.6	□□□□□ -1.67
DDR1-223	ENST00000324771	KRTAP10-7	P60409	375 aa	Predicted RBP	4.6	□□□□□ -1.67
DDR1-223	ENST00000324771	MT1B	P07438	61 aa		4.58	□□□□□ -1.68
DDR1-223	ENST00000324771	KRTAP8-1	Q8IUC2	63 aa		4.56	□□□□□ -1.68
DDR1-223	ENST00000324771	MT1X	P80297	61 aa		4.54	□□□□□ -1.68
DDR1-223	ENST00000324771	KRTAP19-5	Q3LI72	72 aa		4.54	□□□□□ -1.68
DDR1-223	ENST00000324771	KRTAP19-8	Q3LI54	63 aa		4.53	□□□□□ -1.68
DDR1-223	ENST00000324771	KRTAP10-5	P60370	271 aa		4.51	□□□□□ -1.69
DDR1-223	ENST00000324771	KRTAP4-8	A0A0G2JLE6	195 aa		4.5	□□□□□ -1.69
DDR1-223	ENST00000324771	KRTAP4-8	Q9BYQ9	185 aa		4.5	□□□□□ -1.69
DDR1-223	ENST00000324771	KRTAP9-3	Q9BYQ3	159 aa		4.5	□□□□□ -1.69
DDR1-223	ENST00000324771	OBSCN	Q5VST9	7968 aa		4.44	□□□□□ -1.7
DDR1-223	ENST00000324771	LCE2B	O14633	110 aa		4.43	□□□□□ -1.7
DDR1-223	ENST00000324771	USH2A	O75445	5202 aa		4.43	□□□□□ -1.7
DDR1-223	ENST00000324771	SYNE1	Q8NF91	8797 aa	Known RBP	4.4	□□□□□ -1.7
DDR1-223	ENST00000324771	SPRR2F	Q96RM1	72 aa		4.37	□□□□□ -1.71
DDR1-223	ENST00000324771	SPRR5	A0A1B0GTR4	108 aa		4.31	□□□□□ -1.72
DDR1-223	ENST00000324771	LCE3C	Q5T5A8	94 aa		4.31	□□□□□ -1.72
DDR1-223	ENST00000324771	KRTAP4-7	Q9BYR0	210 aa		4.25	□□□□□ -1.73
DDR1-223	ENST00000324771	DST	Q03001	7570 aa	Known RBP	4.25	□□□□□ -1.73
DDR1-223	ENST00000324771	KMT2D	O14686	5537 aa		4.24	□□□□□ -1.73
DDR1-223	ENST00000324771	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	4.19	□□□□□ -1.74
DDR1-223	ENST00000324771	LCE2A	Q5TA79	106 aa	Predicted RBP	4.19	□□□□□ -1.74
DDR1-223	ENST00000324771	MT1G	P13640	62 aa		4.13	□□□□□ -1.75
DDR1-223	ENST00000324771	SYNE2	Q8WXH0	6885 aa	Known RBP	4.03	□□□□□ -1.76
DDR1-223	ENST00000324771	KRTAP4-3	Q9BYR4	195 aa		4.01	□□□□□ -1.77
DDR1-223	ENST00000324771	MT1L	Q93083	61 aa		4	□□□□□ -1.77

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