RNA–Protein interactions for RNA: ENST00000299543.8

CTDP1-202, Transcript of CTD phosphatase subunit 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CTDP1, Length 3,380 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1-202ENST00000299543 KRTAP10-4P60372 401 aaPredicted RBP7.14□□□□□ -1.27
CTDP1-202ENST00000299543 MYCBP2O75592 4640 aa7.12□□□□□ -1.27
CTDP1-202ENST00000299543 KMT2CQ8NEZ4 4911 aaKnown RBP7.1□□□□□ -1.27
CTDP1-202ENST00000299543 A0A0A0MQY5 61 aa7.09□□□□□ -1.27
CTDP1-202ENST00000299543 TPRXLQ17RH7 258 aa7.08□□□□□ -1.28
CTDP1-202ENST00000299543 COX6B2Q6YFQ2 88 aa7.07□□□□□ -1.28
CTDP1-202ENST00000299543 Q5VSD8 79 aa7.03□□□□□ -1.28
CTDP1-202ENST00000299543 KRTAP21-3Q3LHN1 58 aa7.02□□□□□ -1.29
CTDP1-202ENST00000299543 PKHD1L1Q86WI1 4243 aa7.01□□□□□ -1.29
CTDP1-202ENST00000299543 RPL37P61927 97 aaKnown RBP7□□□□□ -1.29
CTDP1-202ENST00000299543 RYR2Q92736 4967 aa7□□□□□ -1.29
CTDP1-202ENST00000299543 HSPG2P98160 4391 aa6.96□□□□□ -1.29
CTDP1-202ENST00000299543 FAT3Q8TDW7 4589 aa6.94□□□□□ -1.3
CTDP1-202ENST00000299543 KRTAP15-1Q3LI76 137 aa6.93□□□□□ -1.3
CTDP1-202ENST00000299543 KRTAP10-8P60410 259 aa6.92□□□□□ -1.3
CTDP1-202ENST00000299543 KRTAP13-4Q3LI77 160 aa6.92□□□□□ -1.3
CTDP1-202ENST00000299543 XP32Q5T750 250 aa6.9□□□□□ -1.3
CTDP1-202ENST00000299543 S4R3F8 94 aa6.86□□□□□ -1.31
CTDP1-202ENST00000299543 TNXBP22105 4242 aa6.86□□□□□ -1.31
CTDP1-202ENST00000299543 KIAA1109Q2LD37 5005 aa6.85□□□□□ -1.31
CTDP1-202ENST00000299543 KRTAP3-3Q9BYR6 98 aa6.83□□□□□ -1.32
CTDP1-202ENST00000299543 LUZP6Q538Z0 58 aa6.83□□□□□ -1.32
CTDP1-202ENST00000299543 KRTAP17-1Q9BYP8 105 aa6.83□□□□□ -1.32
CTDP1-202ENST00000299543 RYR3Q15413 4870 aa6.82□□□□□ -1.32
CTDP1-202ENST00000299543 KRTAP10-6P60371 365 aaPredicted RBP6.8□□□□□ -1.32
CTDP1-202ENST00000299543 RYR1P21817 5038 aa6.76□□□□□ -1.33
CTDP1-202ENST00000299543 LRP2P98164 4655 aa6.76□□□□□ -1.33
CTDP1-202ENST00000299543 LPAP08519 4548 aa6.75□□□□□ -1.33
CTDP1-202ENST00000299543 KRTAP3-2Q9BYR7 98 aa6.73□□□□□ -1.33
CTDP1-202ENST00000299543 MT1HL1P0DM35 61 aa6.72□□□□□ -1.33
CTDP1-202ENST00000299543 KRTAP12-2P59991 146 aa6.71□□□□□ -1.33
CTDP1-202ENST00000299543 EPPK1P58107 5090 aaKnown RBP6.58□□□□□ -1.36
CTDP1-202ENST00000299543 KRTAP4-5Q9BYR2 181 aa6.56□□□□□ -1.36
CTDP1-202ENST00000299543 ABCA13Q86UQ4 5058 aa6.55□□□□□ -1.36
CTDP1-202ENST00000299543 KRTAP12-1P59990 96 aa6.52□□□□□ -1.37
CTDP1-202ENST00000299543 PLAC4Q8WY50 150 aa6.51□□□□□ -1.37
CTDP1-202ENST00000299543 M0QZ58 72 aa6.49□□□□□ -1.37
CTDP1-202ENST00000299543 R4GN34 69 aa6.46□□□□□ -1.38
CTDP1-202ENST00000299543 J3QL48 77 aa6.45□□□□□ -1.38
CTDP1-202ENST00000299543 SEC61BP60468 96 aaKnown RBP6.4□□□□□ -1.39
CTDP1-202ENST00000299543 LORP23490 312 aaPredicted RBP6.34□□□□□ -1.4
CTDP1-202ENST00000299543 KRTAP4-1Q9BYQ7 146 aa6.33□□□□□ -1.4
CTDP1-202ENST00000299543 MUC2Q02817 5179 aa6.3□□□□□ -1.4
CTDP1-202ENST00000299543 HERC2O95714 4834 aa6.29□□□□□ -1.4
CTDP1-202ENST00000299543 CAMK2N1Q7Z7J9 78 aa6.23□□□□□ -1.41
CTDP1-202ENST00000299543 MUC17Q685J3 4493 aa6.22□□□□□ -1.41
CTDP1-202ENST00000299543 HERC1Q15751 4861 aa6.06□□□□□ -1.44
CTDP1-202ENST00000299543 KRTAP19-2Q3LHN2 52 aa6.04□□□□□ -1.44
CTDP1-202ENST00000299543 FAT4Q6V0I7 4981 aa5.99□□□□□ -1.45
CTDP1-202ENST00000299543 FLGP20930 4061 aaPredicted RBP5.96□□□□□ -1.46
CTDP1-202ENST00000299543 M0R2T5 61 aa5.94□□□□□ -1.46
CTDP1-202ENST00000299543 PP632Q6XCG6 107 aa5.92□□□□□ -1.46
CTDP1-202ENST00000299543 PCLOQ9Y6V0 5065 aa5.91□□□□□ -1.46
CTDP1-202ENST00000299543 BIRC6Q9NR09 4857 aa5.9□□□□□ -1.46
CTDP1-202ENST00000299543 RNF213Q63HN8 5207 aa5.86□□□□□ -1.47
CTDP1-202ENST00000299543 TNP1P09430 55 aa5.84□□□□□ -1.47
CTDP1-202ENST00000299543 HMCN2Q8NDA2 5059 aa5.81□□□□□ -1.48
CTDP1-202ENST00000299543 LCE2CQ5TA81 110 aa5.73□□□□□ -1.49
CTDP1-202ENST00000299543 KRTAP10-10P60014 251 aa5.72□□□□□ -1.49
CTDP1-202ENST00000299543 UBR4Q5T4S7 5183 aa5.71□□□□□ -1.49
CTDP1-202ENST00000299543 PRO2289Q9P1D8 64 aa5.69□□□□□ -1.5
CTDP1-202ENST00000299543 KRTAP19-1Q8IUB9 90 aa5.65□□□□□ -1.5
CTDP1-202ENST00000299543 SPRR5A0A1B0GTR4 108 aa5.65□□□□□ -1.51
CTDP1-202ENST00000299543 MT1HP80294 61 aa5.63□□□□□ -1.51
CTDP1-202ENST00000299543 SPRR2GQ9BYE4 73 aa5.61□□□□□ -1.51
CTDP1-202ENST00000299543 MT1FP04733 61 aa5.59□□□□□ -1.51
CTDP1-202ENST00000299543 MT2AP02795 61 aa5.56□□□□□ -1.52
CTDP1-202ENST00000299543 LCE3AQ5TA76 89 aa5.53□□□□□ -1.52
CTDP1-202ENST00000299543 KRTAP23-1A1A580 65 aa5.48□□□□□ -1.53
CTDP1-202ENST00000299543 KRTAP9-8Q9BYQ0 159 aa5.47□□□□□ -1.53
CTDP1-202ENST00000299543 INE1O15225 51 aa5.43□□□□□ -1.54
CTDP1-202ENST00000299543 MT1BP07438 61 aa5.35□□□□□ -1.55
CTDP1-202ENST00000299543 KRTAP10-5P60370 271 aa5.33□□□□□ -1.56
CTDP1-202ENST00000299543 KRTAP19-8Q3LI54 63 aa5.33□□□□□ -1.56
CTDP1-202ENST00000299543 MT1XP80297 61 aa5.32□□□□□ -1.56
CTDP1-202ENST00000299543 KRTAP10-12P60413 245 aa5.29□□□□□ -1.56
CTDP1-202ENST00000299543 KRTAP10-7P60409 375 aaPredicted RBP5.26□□□□□ -1.57
CTDP1-202ENST00000299543 KRTAP12-3P60328 96 aa5.25□□□□□ -1.57
CTDP1-202ENST00000299543 USH2AO75445 5202 aa5.25□□□□□ -1.57
CTDP1-202ENST00000299543 KRTAP8-1Q8IUC2 63 aa5.25□□□□□ -1.57
CTDP1-202ENST00000299543 KRTAP9-3Q9BYQ3 159 aa5.23□□□□□ -1.57
CTDP1-202ENST00000299543 KMT2DO14686 5537 aa5.17□□□□□ -1.58
CTDP1-202ENST00000299543 LCE2BO14633 110 aa5.08□□□□□ -1.6
CTDP1-202ENST00000299543 FSIP2Q5CZC0 6907 aa5.08□□□□□ -1.6
CTDP1-202ENST00000299543 OBSCNQ5VST9 7968 aa5.06□□□□□ -1.6
CTDP1-202ENST00000299543 KRTAP19-5Q3LI72 72 aa5.04□□□□□ -1.6
CTDP1-202ENST00000299543 KRTAP4-8A0A0G2JLE6 195 aa5.01□□□□□ -1.61
CTDP1-202ENST00000299543 KRTAP4-8Q9BYQ9 185 aa5.01□□□□□ -1.61
CTDP1-202ENST00000299543 LCE3CQ5T5A8 94 aa4.9□□□□□ -1.63
CTDP1-202ENST00000299543 LCE2AQ5TA79 106 aaPredicted RBP4.86□□□□□ -1.63
CTDP1-202ENST00000299543 KRTAP4-7Q9BYR0 210 aa4.83□□□□□ -1.64
CTDP1-202ENST00000299543 KRTAP9-6A8MVA2 160 aa4.79□□□□□ -1.64
CTDP1-202ENST00000299543 DSTQ03001 7570 aaKnown RBP4.78□□□□□ -1.64
CTDP1-202ENST00000299543 SYNE1Q8NF91 8797 aaKnown RBP4.74□□□□□ -1.65
CTDP1-202ENST00000299543 KRTAP19-7Q3SYF9 63 aa4.73□□□□□ -1.65
CTDP1-202ENST00000299543 FCGBPQ9Y6R7 5405 aaPredicted RBP4.7□□□□□ -1.66
CTDP1-202ENST00000299543 SSPOA2VEC9 5147 aa4.68□□□□□ -1.66
CTDP1-202ENST00000299543 CRCT1Q9UGL9 99 aa4.64□□□□□ -1.67
CTDP1-202ENST00000299543 MT1LQ93083 61 aa4.61□□□□□ -1.67
CTDP1-202ENST00000299543 MT1EP04732 61 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 117.7 ms