RNA–Protein interactions for RNA: ENST00000272793.9

UBR3-201, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UBR3, Length 8,005 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-201ENST00000272793 LYSTQ99698 3801 aa6.73□□□□□ -1.33
UBR3-201ENST00000272793 KRTAP3-3Q9BYR6 98 aa6.71□□□□□ -1.34
UBR3-201ENST00000272793 LORP23490 312 aaPredicted RBP6.7□□□□□ -1.34
UBR3-201ENST00000272793 CMYA5Q8N3K9 4069 aa6.67□□□□□ -1.34
UBR3-201ENST00000272793 ZNF469Q96JG9 3925 aaPredicted RBP6.5□□□□□ -1.37
UBR3-201ENST00000272793 KMT2AQ03164 3969 aa6.45□□□□□ -1.38
UBR3-201ENST00000272793 ANK2Q01484 3957 aa6.42□□□□□ -1.38
UBR3-201ENST00000272793 KRTAP10-4P60372 401 aaPredicted RBP6.38□□□□□ -1.39
UBR3-201ENST00000272793 DNAH2Q9P225 4427 aa6.35□□□□□ -1.39
UBR3-201ENST00000272793 MT1HL1P0DM35 61 aa6.34□□□□□ -1.39
UBR3-201ENST00000272793 DNAH7Q8WXX0 4024 aa6.25□□□□□ -1.41
UBR3-201ENST00000272793 VPS13BQ7Z7G8 4022 aa6.24□□□□□ -1.41
UBR3-201ENST00000272793 KRTAP4-5Q9BYR2 181 aa6.22□□□□□ -1.41
UBR3-201ENST00000272793 DNAH3Q8TD57 4116 aa6.21□□□□□ -1.42
UBR3-201ENST00000272793 ANK3Q12955 4377 aaKnown RBP6.21□□□□□ -1.42
UBR3-201ENST00000272793 SPRR2FQ96RM1 72 aa6.2□□□□□ -1.42
UBR3-201ENST00000272793 HUWE1Q7Z6Z7 4374 aaKnown RBP6.18□□□□□ -1.42
UBR3-201ENST00000272793 HECTD4Q9Y4D8 3996 aa6.13□□□□□ -1.43
UBR3-201ENST00000272793 DNAH6Q9C0G6 4158 aa6.09□□□□□ -1.43
UBR3-201ENST00000272793 LCE3BQ5TA77 95 aa6.09□□□□□ -1.44
UBR3-201ENST00000272793 FLGP20930 4061 aaPredicted RBP6.05□□□□□ -1.44
UBR3-201ENST00000272793 LCE3CQ5T5A8 94 aa6.05□□□□□ -1.44
UBR3-201ENST00000272793 KRTAP19-5Q3LI72 72 aa6.02□□□□□ -1.45
UBR3-201ENST00000272793 DNAH1Q9P2D7 4330 aa5.97□□□□□ -1.45
UBR3-201ENST00000272793 KRTAP12-4P60329 112 aa5.89□□□□□ -1.47
UBR3-201ENST00000272793 SPRR2EP22531 72 aa5.86□□□□□ -1.47
UBR3-201ENST00000272793 SPRR2BP35325 72 aa5.86□□□□□ -1.47
UBR3-201ENST00000272793 SPRR2AP35326 72 aa5.86□□□□□ -1.47
UBR3-201ENST00000272793 PRKDCP78527 4128 aaKnown RBP5.77□□□□□ -1.49
UBR3-201ENST00000272793 DNAH8Q96JB1 4490 aa5.74□□□□□ -1.49
UBR3-201ENST00000272793 KRTAP4-1Q9BYQ7 146 aa5.72□□□□□ -1.49
UBR3-201ENST00000272793 MT1HP80294 61 aa5.7□□□□□ -1.5
UBR3-201ENST00000272793 DNAH10Q8IVF4 4471 aa5.68□□□□□ -1.5
UBR3-201ENST00000272793 SPRR2DP22532 72 aa5.65□□□□□ -1.5
UBR3-201ENST00000272793 SPRR2GQ9BYE4 73 aa5.64□□□□□ -1.51
UBR3-201ENST00000272793 LCE2BO14633 110 aa5.63□□□□□ -1.51
UBR3-201ENST00000272793 MT2AP02795 61 aa5.63□□□□□ -1.51
UBR3-201ENST00000272793 MT1GP13640 62 aa5.61□□□□□ -1.51
UBR3-201ENST00000272793 LCE3DQ9BYE3 92 aa5.61□□□□□ -1.51
UBR3-201ENST00000272793 LCE3EQ5T5B0 92 aa5.59□□□□□ -1.51
UBR3-201ENST00000272793 MT1FP04733 61 aa5.54□□□□□ -1.52
UBR3-201ENST00000272793 DNAH9Q9NYC9 4486 aa5.48□□□□□ -1.53
UBR3-201ENST00000272793 DNAH17Q9UFH2 4485 aa5.48□□□□□ -1.53
UBR3-201ENST00000272793 KRTAP19-4Q3LI73 84 aa5.44□□□□□ -1.54
UBR3-201ENST00000272793 FAT2Q9NYQ8 4349 aa5.43□□□□□ -1.54
UBR3-201ENST00000272793 MT3P25713 68 aa5.43□□□□□ -1.54
UBR3-201ENST00000272793 FAT1Q14517 4588 aa5.41□□□□□ -1.54
UBR3-201ENST00000272793 VPS13DQ5THJ4 4388 aa5.41□□□□□ -1.54
UBR3-201ENST00000272793 LCE2CQ5TA81 110 aa5.39□□□□□ -1.55
UBR3-201ENST00000272793 DNAH11Q96DT5 4516 aa5.35□□□□□ -1.55
UBR3-201ENST00000272793 DNAH5Q8TE73 4624 aa5.31□□□□□ -1.56
UBR3-201ENST00000272793 PRM1P04553 51 aa5.3□□□□□ -1.56
UBR3-201ENST00000272793 PKHD1L1Q86WI1 4243 aa5.29□□□□□ -1.56
UBR3-201ENST00000272793 LCE2DQ5TA82 110 aaPredicted RBP5.26□□□□□ -1.57
UBR3-201ENST00000272793 SPRR5A0A1B0GTR4 108 aa5.23□□□□□ -1.57
UBR3-201ENST00000272793 LCE1BQ5T7P3 118 aa5.23□□□□□ -1.57
UBR3-201ENST00000272793 APOBP04114 4563 aaKnown RBP5.23□□□□□ -1.57
UBR3-201ENST00000272793 PLECQ15149 4684 aaKnown RBP5.22□□□□□ -1.57
UBR3-201ENST00000272793 DYNC2H1Q8NCM8 4307 aaKnown RBP5.2□□□□□ -1.58
UBR3-201ENST00000272793 KRTAP4-8A0A0G2JLE6 195 aa5.2□□□□□ -1.58
UBR3-201ENST00000272793 KRTAP4-8Q9BYQ9 185 aa5.2□□□□□ -1.58
UBR3-201ENST00000272793 PKD1P98161 4303 aa5.19□□□□□ -1.58
UBR3-201ENST00000272793 MT4P47944 62 aa5.19□□□□□ -1.58
UBR3-201ENST00000272793 MT1XP80297 61 aa5.14□□□□□ -1.59
UBR3-201ENST00000272793 LCE1DQ5T752 114 aa5.14□□□□□ -1.59
UBR3-201ENST00000272793 SACSQ9NZJ4 4579 aa5.12□□□□□ -1.59
UBR3-201ENST00000272793 STARD9Q9P2P6 4700 aa5.11□□□□□ -1.59
UBR3-201ENST00000272793 KRTAP19-1Q8IUB9 90 aa5.09□□□□□ -1.59
UBR3-201ENST00000272793 LRP1BQ9NZR2 4599 aa5.09□□□□□ -1.59
UBR3-201ENST00000272793 PKHD1P08F94 4074 aa5.08□□□□□ -1.6
UBR3-201ENST00000272793 KRTAP4-7Q9BYR0 210 aa5.03□□□□□ -1.6
UBR3-201ENST00000272793 KRTAP19-8Q3LI54 63 aa4.99□□□□□ -1.61
UBR3-201ENST00000272793 FAT3Q8TDW7 4589 aa4.99□□□□□ -1.61
UBR3-201ENST00000272793 MYCBP2O75592 4640 aa4.97□□□□□ -1.61
UBR3-201ENST00000272793 LCE5AQ5TCM9 118 aa4.92□□□□□ -1.62
UBR3-201ENST00000272793 TNXBP22105 4242 aa4.9□□□□□ -1.63
UBR3-201ENST00000272793 MT1BP07438 61 aa4.89□□□□□ -1.63
UBR3-201ENST00000272793 LRP1Q07954 4544 aaKnown RBP4.87□□□□□ -1.63
UBR3-201ENST00000272793 LOC100996750A0A140TA64 210 aa4.82□□□□□ -1.64
UBR3-201ENST00000272793 KRTAP19-3Q7Z4W3 81 aa4.81□□□□□ -1.64
UBR3-201ENST00000272793 MT1LQ93083 61 aa4.81□□□□□ -1.64
UBR3-201ENST00000272793 LCE1CQ5T751 118 aa4.79□□□□□ -1.64
UBR3-201ENST00000272793 LCE1EQ5T753 118 aa4.79□□□□□ -1.64
UBR3-201ENST00000272793 LCE1FQ5T754 118 aa4.79□□□□□ -1.64
UBR3-201ENST00000272793 LCE1AQ5T7P2 110 aa4.79□□□□□ -1.64
UBR3-201ENST00000272793 KRTAP9-8Q9BYQ0 159 aa4.76□□□□□ -1.65
UBR3-201ENST00000272793 DYNC1H1Q14204 4646 aaKnown RBP4.76□□□□□ -1.65
UBR3-201ENST00000272793 LPAP08519 4548 aa4.75□□□□□ -1.65
UBR3-201ENST00000272793 LCE4AQ5TA78 99 aa4.72□□□□□ -1.65
UBR3-201ENST00000272793 HSPG2P98160 4391 aa4.71□□□□□ -1.66
UBR3-201ENST00000272793 KRTAP4-3Q9BYR4 195 aa4.66□□□□□ -1.66
UBR3-201ENST00000272793 KRTAP4-9Q9BYQ8 210 aa4.65□□□□□ -1.66
UBR3-201ENST00000272793 MT1EP04732 61 aa4.63□□□□□ -1.67
UBR3-201ENST00000272793 KRTAP9-3Q9BYQ3 159 aa4.62□□□□□ -1.67
UBR3-201ENST00000272793 RYR1P21817 5038 aa4.59□□□□□ -1.68
UBR3-201ENST00000272793 MT1MQ8N339 61 aa4.54□□□□□ -1.68
UBR3-201ENST00000272793 SYNE2Q8WXH0 6885 aaKnown RBP4.52□□□□□ -1.69
UBR3-201ENST00000272793 KRTAP17-1Q9BYP8 105 aa4.51□□□□□ -1.69
UBR3-201ENST00000272793 LRP2P98164 4655 aa4.45□□□□□ -1.7
UBR3-201ENST00000272793 KRTAP6-2Q3LI66 62 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 97.3 ms