RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 EPPK1P58107 5090 aaKnown RBP8.73□□□□□ -1.01
VPS54-201ENST00000272322 LRP2P98164 4655 aa8.7□□□□□ -1.02
VPS54-201ENST00000272322 A0A1B0GU33 70 aa8.7□□□□□ -1.02
VPS54-201ENST00000272322 H0YAA0 97 aa8.69□□□□□ -1.02
VPS54-201ENST00000272322 KRTAP10-8P60410 259 aa8.69□□□□□ -1.02
VPS54-201ENST00000272322 COX6B2Q6YFQ2 88 aa8.68□□□□□ -1.02
VPS54-201ENST00000272322 CRIPTQ9P021 101 aa8.66□□□□□ -1.02
VPS54-201ENST00000272322 A0A0D9SG42 100 aa8.64□□□□□ -1.03
VPS54-201ENST00000272322 XP32Q5T750 250 aa8.63□□□□□ -1.03
VPS54-201ENST00000272322 ABCA13Q86UQ4 5058 aa8.6□□□□□ -1.03
VPS54-201ENST00000272322 CSAG1Q6PB30 78 aa8.59□□□□□ -1.03
VPS54-201ENST00000272322 H1FX-AS1Q4G0G2 97 aa8.58□□□□□ -1.04
VPS54-201ENST00000272322 RPL37P61927 97 aaKnown RBP8.56□□□□□ -1.04
VPS54-201ENST00000272322 MT1HL1P0DM35 61 aa8.5□□□□□ -1.05
VPS54-201ENST00000272322 KRTAP4-5Q9BYR2 181 aa8.49□□□□□ -1.05
VPS54-201ENST00000272322 KRTAP3-3Q9BYR6 98 aa8.46□□□□□ -1.05
VPS54-201ENST00000272322 S4R3F8 94 aa8.46□□□□□ -1.06
VPS54-201ENST00000272322 P0C880 135 aa8.44□□□□□ -1.06
VPS54-201ENST00000272322 KRTAP13-4Q3LI77 160 aa8.43□□□□□ -1.06
VPS54-201ENST00000272322 KRTAP10-6P60371 365 aaPredicted RBP8.38□□□□□ -1.07
VPS54-201ENST00000272322 MUC2Q02817 5179 aa8.36□□□□□ -1.07
VPS54-201ENST00000272322 K7ERS5 55 aa8.35□□□□□ -1.07
VPS54-201ENST00000272322 LINC01554Q52M75 96 aa8.35□□□□□ -1.07
VPS54-201ENST00000272322 KRTAP3-2Q9BYR7 98 aa8.3□□□□□ -1.08
VPS54-201ENST00000272322 SPINT4Q6UDR6 99 aa8.29□□□□□ -1.08
VPS54-201ENST00000272322 HERC2O95714 4834 aa8.23□□□□□ -1.09
VPS54-201ENST00000272322 J3QL48 77 aa8.2□□□□□ -1.1
VPS54-201ENST00000272322 C10orf95Q9H7T3 257 aa8.17□□□□□ -1.1
VPS54-201ENST00000272322 KRTAP25-1Q3LHN0 102 aa8.16□□□□□ -1.1
VPS54-201ENST00000272322 TPRXLQ17RH7 258 aa8.15□□□□□ -1.1
VPS54-201ENST00000272322 KRTAP12-2P59991 146 aa8.14□□□□□ -1.11
VPS54-201ENST00000272322 ROMO1P60602 79 aa8.11□□□□□ -1.11
VPS54-201ENST00000272322 M0QZ58 72 aa8.04□□□□□ -1.12
VPS54-201ENST00000272322 KRTAP4-1Q9BYQ7 146 aa8.04□□□□□ -1.12
VPS54-201ENST00000272322 HERC1Q15751 4861 aa8.04□□□□□ -1.12
VPS54-201ENST00000272322 KRTAP12-1P59990 96 aa7.98□□□□□ -1.13
VPS54-201ENST00000272322 R4GN34 69 aa7.98□□□□□ -1.13
VPS54-201ENST00000272322 LORP23490 312 aaPredicted RBP7.97□□□□□ -1.13
VPS54-201ENST00000272322 SEC61BP60468 96 aaKnown RBP7.95□□□□□ -1.14
VPS54-201ENST00000272322 PCLOQ9Y6V0 5065 aa7.93□□□□□ -1.14
VPS54-201ENST00000272322 FAT4Q6V0I7 4981 aa7.93□□□□□ -1.14
VPS54-201ENST00000272322 MUC17Q685J3 4493 aa7.9□□□□□ -1.15
VPS54-201ENST00000272322 RNF213Q63HN8 5207 aa7.86□□□□□ -1.15
VPS54-201ENST00000272322 BIRC6Q9NR09 4857 aa7.83□□□□□ -1.16
VPS54-201ENST00000272322 H3BS24 57 aa7.67□□□□□ -1.18
VPS54-201ENST00000272322 CAMK2N1Q7Z7J9 78 aa7.65□□□□□ -1.18
VPS54-201ENST00000272322 UBR4Q5T4S7 5183 aa7.65□□□□□ -1.19
VPS54-201ENST00000272322 KRTAP19-2Q3LHN2 52 aa7.59□□□□□ -1.19
VPS54-201ENST00000272322 HMCN2Q8NDA2 5059 aa7.58□□□□□ -1.2
VPS54-201ENST00000272322 FLGP20930 4061 aaPredicted RBP7.53□□□□□ -1.2
VPS54-201ENST00000272322 M0R2T5 61 aa7.53□□□□□ -1.2
VPS54-201ENST00000272322 NDUFAF8A1L188 74 aa7.47□□□□□ -1.21
VPS54-201ENST00000272322 KRTAP15-1Q3LI76 137 aa7.36□□□□□ -1.23
VPS54-201ENST00000272322 LCE2CQ5TA81 110 aa7.26□□□□□ -1.25
VPS54-201ENST00000272322 PLAC4Q8WY50 150 aa7.24□□□□□ -1.25
VPS54-201ENST00000272322 KRTAP10-10P60014 251 aa7.21□□□□□ -1.26
VPS54-201ENST00000272322 TNP1P09430 55 aa7.15□□□□□ -1.27
VPS54-201ENST00000272322 MT1HP80294 61 aa7.14□□□□□ -1.27
VPS54-201ENST00000272322 KRTAP19-1Q8IUB9 90 aa7.09□□□□□ -1.27
VPS54-201ENST00000272322 MT1FP04733 61 aa7.07□□□□□ -1.28
VPS54-201ENST00000272322 USH2AO75445 5202 aa7.05□□□□□ -1.28
VPS54-201ENST00000272322 MT2AP02795 61 aa7.02□□□□□ -1.29
VPS54-201ENST00000272322 PP632Q6XCG6 107 aa6.99□□□□□ -1.29
VPS54-201ENST00000272322 SPRR2GQ9BYE4 73 aa6.96□□□□□ -1.3
VPS54-201ENST00000272322 LUZP6Q538Z0 58 aa6.93□□□□□ -1.3
VPS54-201ENST00000272322 KRTAP9-8Q9BYQ0 159 aa6.92□□□□□ -1.3
VPS54-201ENST00000272322 LCE3AQ5TA76 89 aa6.87□□□□□ -1.31
VPS54-201ENST00000272322 KMT2DO14686 5537 aa6.84□□□□□ -1.31
VPS54-201ENST00000272322 FSIP2Q5CZC0 6907 aa6.83□□□□□ -1.32
VPS54-201ENST00000272322 MT1BP07438 61 aa6.72□□□□□ -1.33
VPS54-201ENST00000272322 KRTAP10-5P60370 271 aa6.66□□□□□ -1.34
VPS54-201ENST00000272322 MT1XP80297 61 aa6.66□□□□□ -1.34
VPS54-201ENST00000272322 KRTAP10-7P60409 375 aaPredicted RBP6.62□□□□□ -1.35
VPS54-201ENST00000272322 KRTAP19-8Q3LI54 63 aa6.6□□□□□ -1.35
VPS54-201ENST00000272322 KRTAP9-3Q9BYQ3 159 aa6.6□□□□□ -1.35
VPS54-201ENST00000272322 KRTAP10-12P60413 245 aa6.56□□□□□ -1.36
VPS54-201ENST00000272322 KRTAP23-1A1A580 65 aa6.53□□□□□ -1.36
VPS54-201ENST00000272322 LCE2BO14633 110 aa6.49□□□□□ -1.37
VPS54-201ENST00000272322 KRTAP12-3P60328 96 aa6.49□□□□□ -1.37
VPS54-201ENST00000272322 KRTAP8-1Q8IUC2 63 aa6.43□□□□□ -1.38
VPS54-201ENST00000272322 A0A0A0MQY5 61 aa6.41□□□□□ -1.38
VPS54-201ENST00000272322 SPRR5A0A1B0GTR4 108 aa6.41□□□□□ -1.38
VPS54-201ENST00000272322 KRTAP4-8A0A0G2JLE6 195 aa6.4□□□□□ -1.39
VPS54-201ENST00000272322 KRTAP4-8Q9BYQ9 185 aa6.4□□□□□ -1.39
VPS54-201ENST00000272322 PRO2289Q9P1D8 64 aa6.38□□□□□ -1.39
VPS54-201ENST00000272322 KRTAP19-5Q3LI72 72 aa6.3□□□□□ -1.4
VPS54-201ENST00000272322 LCE2AQ5TA79 106 aaPredicted RBP6.23□□□□□ -1.41
VPS54-201ENST00000272322 SSPOA2VEC9 5147 aa6.19□□□□□ -1.42
VPS54-201ENST00000272322 KRTAP4-7Q9BYR0 210 aa6.14□□□□□ -1.43
VPS54-201ENST00000272322 DSTQ03001 7570 aaKnown RBP6.13□□□□□ -1.43
VPS54-201ENST00000272322 MUC12Q9UKN1 5478 aa6.05□□□□□ -1.44
VPS54-201ENST00000272322 LCE3CQ5T5A8 94 aa6.02□□□□□ -1.45
VPS54-201ENST00000272322 FCGBPQ9Y6R7 5405 aaPredicted RBP5.99□□□□□ -1.45
VPS54-201ENST00000272322 KRTAP9-6A8MVA2 160 aa5.94□□□□□ -1.46
VPS54-201ENST00000272322 KRTAP19-7Q3SYF9 63 aa5.93□□□□□ -1.46
VPS54-201ENST00000272322 CRCT1Q9UGL9 99 aa5.8□□□□□ -1.48
VPS54-201ENST00000272322 KRTAP4-3Q9BYR4 195 aa5.77□□□□□ -1.49
VPS54-201ENST00000272322 SYNE1Q8NF91 8797 aaKnown RBP5.76□□□□□ -1.49
VPS54-201ENST00000272322 MT1EP04732 61 aa5.74□□□□□ -1.49
VPS54-201ENST00000272322 MT1LQ93083 61 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms