RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 TPRXLQ17RH7 258 aa7.56□□□□□ -1.2
SDC1-201ENST00000254351 RPL37P61927 97 aaKnown RBP7.53□□□□□ -1.2
SDC1-201ENST00000254351 NDUFAF8A1L188 74 aa7.52□□□□□ -1.21
SDC1-201ENST00000254351 DYNC1H1Q14204 4646 aaKnown RBP7.52□□□□□ -1.21
SDC1-201ENST00000254351 C20orf166-AS1Q96NR2 134 aa7.51□□□□□ -1.21
SDC1-201ENST00000254351 MYCBP2O75592 4640 aa7.49□□□□□ -1.21
SDC1-201ENST00000254351 KRTAP10-6P60371 365 aaPredicted RBP7.45□□□□□ -1.22
SDC1-201ENST00000254351 APOBP04114 4563 aaKnown RBP7.43□□□□□ -1.22
SDC1-201ENST00000254351 KRTAP3-3Q9BYR6 98 aa7.38□□□□□ -1.23
SDC1-201ENST00000254351 KRTAP10-8P60410 259 aa7.36□□□□□ -1.23
SDC1-201ENST00000254351 KRTAP12-2P59991 146 aa7.36□□□□□ -1.23
SDC1-201ENST00000254351 LRP1Q07954 4544 aaKnown RBP7.34□□□□□ -1.23
SDC1-201ENST00000254351 KRTAP3-2Q9BYR7 98 aa7.34□□□□□ -1.24
SDC1-201ENST00000254351 HSPG2P98160 4391 aa7.33□□□□□ -1.24
SDC1-201ENST00000254351 S4R3F8 94 aa7.33□□□□□ -1.24
SDC1-201ENST00000254351 KRTAP10-4P60372 401 aaPredicted RBP7.32□□□□□ -1.24
SDC1-201ENST00000254351 RPS29P62273 56 aaKnown RBP7.32□□□□□ -1.24
SDC1-201ENST00000254351 EPPK1P58107 5090 aaKnown RBP7.3□□□□□ -1.24
SDC1-201ENST00000254351 RYR1P21817 5038 aa7.28□□□□□ -1.24
SDC1-201ENST00000254351 KRTAP15-1Q3LI76 137 aa7.26□□□□□ -1.25
SDC1-201ENST00000254351 Q5VSD8 79 aa7.24□□□□□ -1.25
SDC1-201ENST00000254351 KIAA1109Q2LD37 5005 aa7.23□□□□□ -1.25
SDC1-201ENST00000254351 LPAP08519 4548 aa7.22□□□□□ -1.25
SDC1-201ENST00000254351 KRTAP17-1Q9BYP8 105 aa7.18□□□□□ -1.26
SDC1-201ENST00000254351 PKHD1L1Q86WI1 4243 aa7.17□□□□□ -1.26
SDC1-201ENST00000254351 KRTAP12-1P59990 96 aa7.17□□□□□ -1.26
SDC1-201ENST00000254351 FAT3Q8TDW7 4589 aa7.16□□□□□ -1.26
SDC1-201ENST00000254351 XP32Q5T750 250 aa7.1□□□□□ -1.27
SDC1-201ENST00000254351 BIRC6Q9NR09 4857 aa7.07□□□□□ -1.28
SDC1-201ENST00000254351 LRP2P98164 4655 aa7.03□□□□□ -1.28
SDC1-201ENST00000254351 KRTAP4-5Q9BYR2 181 aa7.02□□□□□ -1.29
SDC1-201ENST00000254351 M0QZ58 72 aa7□□□□□ -1.29
SDC1-201ENST00000254351 TNXBP22105 4242 aa6.98□□□□□ -1.29
SDC1-201ENST00000254351 HERC2O95714 4834 aa6.97□□□□□ -1.29
SDC1-201ENST00000254351 MT1HL1P0DM35 61 aa6.95□□□□□ -1.3
SDC1-201ENST00000254351 R4GN34 69 aa6.92□□□□□ -1.3
SDC1-201ENST00000254351 ABCA13Q86UQ4 5058 aa6.89□□□□□ -1.31
SDC1-201ENST00000254351 PLAC4Q8WY50 150 aa6.88□□□□□ -1.31
SDC1-201ENST00000254351 A0A0A0MQY5 61 aa6.85□□□□□ -1.31
SDC1-201ENST00000254351 LORP23490 312 aaPredicted RBP6.83□□□□□ -1.32
SDC1-201ENST00000254351 LUZP6Q538Z0 58 aa6.81□□□□□ -1.32
SDC1-201ENST00000254351 J3QL48 77 aa6.78□□□□□ -1.32
SDC1-201ENST00000254351 PCLOQ9Y6V0 5065 aa6.7□□□□□ -1.34
SDC1-201ENST00000254351 CAMK2N1Q7Z7J9 78 aa6.69□□□□□ -1.34
SDC1-201ENST00000254351 MUC2Q02817 5179 aa6.64□□□□□ -1.35
SDC1-201ENST00000254351 HERC1Q15751 4861 aa6.52□□□□□ -1.37
SDC1-201ENST00000254351 KRTAP4-1Q9BYQ7 146 aa6.45□□□□□ -1.38
SDC1-201ENST00000254351 HMCN2Q8NDA2 5059 aa6.44□□□□□ -1.38
SDC1-201ENST00000254351 SEC61BP60468 96 aaKnown RBP6.4□□□□□ -1.39
SDC1-201ENST00000254351 PP632Q6XCG6 107 aa6.37□□□□□ -1.39
SDC1-201ENST00000254351 MUC17Q685J3 4493 aa6.35□□□□□ -1.39
SDC1-201ENST00000254351 TNP1P09430 55 aa6.3□□□□□ -1.4
SDC1-201ENST00000254351 FAT4Q6V0I7 4981 aa6.25□□□□□ -1.41
SDC1-201ENST00000254351 UBR4Q5T4S7 5183 aa6.15□□□□□ -1.43
SDC1-201ENST00000254351 KRTAP19-2Q3LHN2 52 aa6.12□□□□□ -1.43
SDC1-201ENST00000254351 RNF213Q63HN8 5207 aa6.08□□□□□ -1.44
SDC1-201ENST00000254351 SPRR5A0A1B0GTR4 108 aa6.03□□□□□ -1.44
SDC1-201ENST00000254351 LCE3AQ5TA76 89 aa6.01□□□□□ -1.45
SDC1-201ENST00000254351 FLGP20930 4061 aaPredicted RBP5.99□□□□□ -1.45
SDC1-201ENST00000254351 LCE2CQ5TA81 110 aa5.97□□□□□ -1.45
SDC1-201ENST00000254351 M0R2T5 61 aa5.95□□□□□ -1.46
SDC1-201ENST00000254351 MT1HP80294 61 aa5.85□□□□□ -1.47
SDC1-201ENST00000254351 KRTAP23-1A1A580 65 aa5.85□□□□□ -1.47
SDC1-201ENST00000254351 KRTAP19-1Q8IUB9 90 aa5.82□□□□□ -1.48
SDC1-201ENST00000254351 PRO2289Q9P1D8 64 aa5.81□□□□□ -1.48
SDC1-201ENST00000254351 KRTAP10-10P60014 251 aa5.77□□□□□ -1.49
SDC1-201ENST00000254351 SPRR2GQ9BYE4 73 aa5.72□□□□□ -1.49
SDC1-201ENST00000254351 LCE2AQ5TA79 106 aaPredicted RBP5.68□□□□□ -1.5
SDC1-201ENST00000254351 MT1FP04733 61 aa5.65□□□□□ -1.51
SDC1-201ENST00000254351 KRTAP12-3P60328 96 aa5.64□□□□□ -1.51
SDC1-201ENST00000254351 KRTAP9-8Q9BYQ0 159 aa5.63□□□□□ -1.51
SDC1-201ENST00000254351 KMT2DO14686 5537 aa5.62□□□□□ -1.51
SDC1-201ENST00000254351 INE1O15225 51 aa5.61□□□□□ -1.51
SDC1-201ENST00000254351 MT2AP02795 61 aa5.61□□□□□ -1.51
SDC1-201ENST00000254351 KRTAP8-1Q8IUC2 63 aa5.6□□□□□ -1.51
SDC1-201ENST00000254351 KRTAP10-12P60413 245 aa5.57□□□□□ -1.52
SDC1-201ENST00000254351 USH2AO75445 5202 aa5.55□□□□□ -1.52
SDC1-201ENST00000254351 KRTAP10-7P60409 375 aaPredicted RBP5.54□□□□□ -1.52
SDC1-201ENST00000254351 KRTAP10-5P60370 271 aa5.54□□□□□ -1.52
SDC1-201ENST00000254351 MT1XP80297 61 aa5.52□□□□□ -1.53
SDC1-201ENST00000254351 MT1BP07438 61 aa5.45□□□□□ -1.54
SDC1-201ENST00000254351 KRTAP9-3Q9BYQ3 159 aa5.43□□□□□ -1.54
SDC1-201ENST00000254351 KRTAP19-5Q3LI72 72 aa5.34□□□□□ -1.55
SDC1-201ENST00000254351 KRTAP19-8Q3LI54 63 aa5.34□□□□□ -1.56
SDC1-201ENST00000254351 LCE2BO14633 110 aa5.28□□□□□ -1.56
SDC1-201ENST00000254351 LCE3CQ5T5A8 94 aa5.27□□□□□ -1.57
SDC1-201ENST00000254351 KRTAP4-7Q9BYR0 210 aa5.26□□□□□ -1.57
SDC1-201ENST00000254351 KRTAP4-8A0A0G2JLE6 195 aa5.26□□□□□ -1.57
SDC1-201ENST00000254351 KRTAP4-8Q9BYQ9 185 aa5.26□□□□□ -1.57
SDC1-201ENST00000254351 KRTAP9-6A8MVA2 160 aa5.25□□□□□ -1.57
SDC1-201ENST00000254351 LCE2DQ5TA82 110 aaPredicted RBP5.17□□□□□ -1.58
SDC1-201ENST00000254351 FSIP2Q5CZC0 6907 aa5.14□□□□□ -1.59
SDC1-201ENST00000254351 KRTAP9-2Q9BYQ4 174 aa5□□□□□ -1.61
SDC1-201ENST00000254351 SSPOA2VEC9 5147 aa5□□□□□ -1.61
SDC1-201ENST00000254351 KRTAP19-6Q3LI70 58 aa4.99□□□□□ -1.61
SDC1-201ENST00000254351 DSTQ03001 7570 aaKnown RBP4.96□□□□□ -1.61
SDC1-201ENST00000254351 KRTAP2-3P0C7H8 128 aa4.93□□□□□ -1.62
SDC1-201ENST00000254351 KRTAP2-4Q9BYR9 128 aa4.93□□□□□ -1.62
SDC1-201ENST00000254351 KRTAP2-1Q9BYU5 128 aa4.93□□□□□ -1.62
SDC1-201ENST00000254351 CRCT1Q9UGL9 99 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms