RNA–Protein interactions for RNA: ENST00000230538.11

LAMA4-201, Transcript of laminin subunit alpha 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LAMA4, Length 6,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LAMA4-201ENST00000230538 COL7A1Q02388 2944 aa4.82□□□□□ -1.64
LAMA4-201ENST00000230538 SRRM2Q9UQ35 2752 aaKnown RBP4.82□□□□□ -1.64
LAMA4-201ENST00000230538 KRTAP10-5P60370 271 aa4.8□□□□□ -1.64
LAMA4-201ENST00000230538 KRTAP8-1Q8IUC2 63 aa4.79□□□□□ -1.64
LAMA4-201ENST00000230538 DNAH9Q9NYC9 4486 aa4.79□□□□□ -1.64
LAMA4-201ENST00000230538 CSMD3Q7Z407 3707 aa4.77□□□□□ -1.65
LAMA4-201ENST00000230538 DNAH1Q9P2D7 4330 aa4.76□□□□□ -1.65
LAMA4-201ENST00000230538 DNAH3Q8TD57 4116 aa4.7□□□□□ -1.66
LAMA4-201ENST00000230538 DNAH2Q9P225 4427 aa4.65□□□□□ -1.67
LAMA4-201ENST00000230538 KRTAP4-1Q9BYQ7 146 aa4.64□□□□□ -1.67
LAMA4-201ENST00000230538 ZNF469Q96JG9 3925 aaPredicted RBP4.64□□□□□ -1.67
LAMA4-201ENST00000230538 DNAH10Q8IVF4 4471 aa4.62□□□□□ -1.67
LAMA4-201ENST00000230538 MT1HP80294 61 aa4.58□□□□□ -1.68
LAMA4-201ENST00000230538 DNAH5Q8TE73 4624 aa4.57□□□□□ -1.68
LAMA4-201ENST00000230538 DNAH17Q9UFH2 4485 aa4.57□□□□□ -1.68
LAMA4-201ENST00000230538 DNAH11Q96DT5 4516 aa4.57□□□□□ -1.68
LAMA4-201ENST00000230538 PLECQ15149 4684 aaKnown RBP4.57□□□□□ -1.68
LAMA4-201ENST00000230538 VPS13DQ5THJ4 4388 aa4.53□□□□□ -1.68
LAMA4-201ENST00000230538 DNAH8Q96JB1 4490 aa4.51□□□□□ -1.69
LAMA4-201ENST00000230538 MT2AP02795 61 aa4.51□□□□□ -1.69
LAMA4-201ENST00000230538 ANK2Q01484 3957 aa4.5□□□□□ -1.69
LAMA4-201ENST00000230538 SPRR2GQ9BYE4 73 aa4.49□□□□□ -1.69
LAMA4-201ENST00000230538 FAT2Q9NYQ8 4349 aa4.47□□□□□ -1.69
LAMA4-201ENST00000230538 KRTAP19-5Q3LI72 72 aa4.45□□□□□ -1.7
LAMA4-201ENST00000230538 DYNC2H1Q8NCM8 4307 aaKnown RBP4.44□□□□□ -1.7
LAMA4-201ENST00000230538 KRTAP10-7P60409 375 aaPredicted RBP4.44□□□□□ -1.7
LAMA4-201ENST00000230538 SPRR2FQ96RM1 72 aa4.43□□□□□ -1.7
LAMA4-201ENST00000230538 FRAS1Q86XX4 4008 aa4.41□□□□□ -1.7
LAMA4-201ENST00000230538 MT1FP04733 61 aa4.41□□□□□ -1.7
LAMA4-201ENST00000230538 STARD9Q9P2P6 4700 aa4.4□□□□□ -1.7
LAMA4-201ENST00000230538 DNAH7Q8WXX0 4024 aa4.39□□□□□ -1.71
LAMA4-201ENST00000230538 CMYA5Q8N3K9 4069 aa4.39□□□□□ -1.71
LAMA4-201ENST00000230538 LCE3CQ5T5A8 94 aa4.39□□□□□ -1.71
LAMA4-201ENST00000230538 SACSQ9NZJ4 4579 aa4.38□□□□□ -1.71
LAMA4-201ENST00000230538 LRP1BQ9NZR2 4599 aa4.37□□□□□ -1.71
LAMA4-201ENST00000230538 PRKDCP78527 4128 aaKnown RBP4.37□□□□□ -1.71
LAMA4-201ENST00000230538 KMT2AQ03164 3969 aa4.35□□□□□ -1.71
LAMA4-201ENST00000230538 DNAH6Q9C0G6 4158 aa4.34□□□□□ -1.71
LAMA4-201ENST00000230538 VPS13BQ7Z7G8 4022 aa4.34□□□□□ -1.72
LAMA4-201ENST00000230538 DYNC1H1Q14204 4646 aaKnown RBP4.33□□□□□ -1.72
LAMA4-201ENST00000230538 KRTAP19-4Q3LI73 84 aa4.24□□□□□ -1.73
LAMA4-201ENST00000230538 FAT1Q14517 4588 aa4.21□□□□□ -1.73
LAMA4-201ENST00000230538 SPRR2EP22531 72 aa4.18□□□□□ -1.74
LAMA4-201ENST00000230538 SPRR2BP35325 72 aa4.18□□□□□ -1.74
LAMA4-201ENST00000230538 SPRR2AP35326 72 aa4.18□□□□□ -1.74
LAMA4-201ENST00000230538 HECTD4Q9Y4D8 3996 aa4.18□□□□□ -1.74
LAMA4-201ENST00000230538 APOBP04114 4563 aaKnown RBP4.16□□□□□ -1.74
LAMA4-201ENST00000230538 LYSTQ99698 3801 aa4.15□□□□□ -1.75
LAMA4-201ENST00000230538 LCE3BQ5TA77 95 aa4.13□□□□□ -1.75
LAMA4-201ENST00000230538 KRTAP19-8Q3LI54 63 aa4.12□□□□□ -1.75
LAMA4-201ENST00000230538 KRTAP17-1Q9BYP8 105 aa4.1□□□□□ -1.75
LAMA4-201ENST00000230538 KRTAP19-1Q8IUB9 90 aa4.09□□□□□ -1.75
LAMA4-201ENST00000230538 MT1XP80297 61 aa4.08□□□□□ -1.76
LAMA4-201ENST00000230538 MT1GP13640 62 aa4.06□□□□□ -1.76
LAMA4-201ENST00000230538 FAT3Q8TDW7 4589 aa4.05□□□□□ -1.76
LAMA4-201ENST00000230538 SPRR2DP22532 72 aa4.04□□□□□ -1.76
LAMA4-201ENST00000230538 RYR1P21817 5038 aa4.02□□□□□ -1.77
LAMA4-201ENST00000230538 DNHD1Q96M86 4753 aa4.01□□□□□ -1.77
LAMA4-201ENST00000230538 LCE2BO14633 110 aa4.01□□□□□ -1.77
LAMA4-201ENST00000230538 KRTAP12-4P60329 112 aa4.01□□□□□ -1.77
LAMA4-201ENST00000230538 MT1BP07438 61 aa3.99□□□□□ -1.77
LAMA4-201ENST00000230538 KRTAP4-8A0A0G2JLE6 195 aa3.96□□□□□ -1.78
LAMA4-201ENST00000230538 KRTAP4-8Q9BYQ9 185 aa3.96□□□□□ -1.78
LAMA4-201ENST00000230538 KRTAP9-8Q9BYQ0 159 aa3.94□□□□□ -1.78
LAMA4-201ENST00000230538 RYR3Q15413 4870 aa3.93□□□□□ -1.78
LAMA4-201ENST00000230538 LRP1Q07954 4544 aaKnown RBP3.93□□□□□ -1.78
LAMA4-201ENST00000230538 HSPG2P98160 4391 aa3.89□□□□□ -1.79
LAMA4-201ENST00000230538 LCE3DQ9BYE3 92 aa3.88□□□□□ -1.79
LAMA4-201ENST00000230538 SPRR5A0A1B0GTR4 108 aa3.87□□□□□ -1.79
LAMA4-201ENST00000230538 PKD1P98161 4303 aa3.87□□□□□ -1.79
LAMA4-201ENST00000230538 KRTAP9-3Q9BYQ3 159 aa3.86□□□□□ -1.79
LAMA4-201ENST00000230538 PKHD1L1Q86WI1 4243 aa3.85□□□□□ -1.79
LAMA4-201ENST00000230538 LPAP08519 4548 aa3.84□□□□□ -1.79
LAMA4-201ENST00000230538 LCE2CQ5TA81 110 aa3.83□□□□□ -1.8
LAMA4-201ENST00000230538 LCE3EQ5T5B0 92 aa3.82□□□□□ -1.8
LAMA4-201ENST00000230538 MYCBP2O75592 4640 aa3.81□□□□□ -1.8
LAMA4-201ENST00000230538 TNXBP22105 4242 aa3.81□□□□□ -1.8
LAMA4-201ENST00000230538 HERC1Q15751 4861 aa3.79□□□□□ -1.8
LAMA4-201ENST00000230538 KRTAP4-7Q9BYR0 210 aa3.78□□□□□ -1.8
LAMA4-201ENST00000230538 KRTAP19-3Q7Z4W3 81 aa3.76□□□□□ -1.81
LAMA4-201ENST00000230538 PKHD1P08F94 4074 aa3.75□□□□□ -1.81
LAMA4-201ENST00000230538 RYR2Q92736 4967 aa3.74□□□□□ -1.81
LAMA4-201ENST00000230538 HYDINQ4G0P3 5121 aa3.72□□□□□ -1.81
LAMA4-201ENST00000230538 MT1LQ93083 61 aa3.71□□□□□ -1.82
LAMA4-201ENST00000230538 MUC17Q685J3 4493 aa3.7□□□□□ -1.82
LAMA4-201ENST00000230538 LCE2DQ5TA82 110 aaPredicted RBP3.69□□□□□ -1.82
LAMA4-201ENST00000230538 MT1EP04732 61 aa3.67□□□□□ -1.82
LAMA4-201ENST00000230538 LOC100996750A0A140TA64 210 aa3.61□□□□□ -1.83
LAMA4-201ENST00000230538 KRTAP19-2Q3LHN2 52 aa3.6□□□□□ -1.83
LAMA4-201ENST00000230538 LRP2P98164 4655 aa3.59□□□□□ -1.83
LAMA4-201ENST00000230538 MT4P47944 62 aa3.58□□□□□ -1.84
LAMA4-201ENST00000230538 MT3P25713 68 aa3.58□□□□□ -1.84
LAMA4-201ENST00000230538 MT1MQ8N339 61 aa3.57□□□□□ -1.84
LAMA4-201ENST00000230538 FLGP20930 4061 aaPredicted RBP3.57□□□□□ -1.84
LAMA4-201ENST00000230538 PRM1P04553 51 aa3.55□□□□□ -1.84
LAMA4-201ENST00000230538 KRTAP4-3Q9BYR4 195 aa3.54□□□□□ -1.84
LAMA4-201ENST00000230538 KIAA1109Q2LD37 5005 aa3.52□□□□□ -1.85
LAMA4-201ENST00000230538 KRTAP9-2Q9BYQ4 174 aa3.52□□□□□ -1.85
LAMA4-201ENST00000230538 HERC2O95714 4834 aa3.5□□□□□ -1.85
LAMA4-201ENST00000230538 LCE1BQ5T7P3 118 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms