RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 CSAG1Q6PB30 78 aa5.66□□□□□ -1.5
USP28-201ENST00000003302 MUC2Q02817 5179 aa5.66□□□□□ -1.5
USP28-201ENST00000003302 A0A1B0GVY2 172 aa5.65□□□□□ -1.51
USP28-201ENST00000003302 KRTAP10-8P60410 259 aa5.63□□□□□ -1.51
USP28-201ENST00000003302 A8MUU9 505 aa5.63□□□□□ -1.51
USP28-201ENST00000003302 C20orf166-AS1Q96NR2 134 aa5.63□□□□□ -1.51
USP28-201ENST00000003302 KRTAP13-4Q3LI77 160 aa5.57□□□□□ -1.52
USP28-201ENST00000003302 KRTAP3-3Q9BYR6 98 aa5.56□□□□□ -1.52
USP28-201ENST00000003302 A0A1B0GU33 70 aa5.53□□□□□ -1.52
USP28-201ENST00000003302 COX6B2Q6YFQ2 88 aa5.52□□□□□ -1.53
USP28-201ENST00000003302 LINC01554Q52M75 96 aa5.52□□□□□ -1.53
USP28-201ENST00000003302 RPS29P62273 56 aaKnown RBP5.51□□□□□ -1.53
USP28-201ENST00000003302 H1FX-AS1Q4G0G2 97 aa5.5□□□□□ -1.53
USP28-201ENST00000003302 KRTAP10-6P60371 365 aaPredicted RBP5.5□□□□□ -1.53
USP28-201ENST00000003302 A0A0D9SG42 100 aa5.47□□□□□ -1.53
USP28-201ENST00000003302 P0C880 135 aa5.46□□□□□ -1.54
USP28-201ENST00000003302 KRTAP3-2Q9BYR7 98 aa5.46□□□□□ -1.54
USP28-201ENST00000003302 XP32Q5T750 250 aa5.43□□□□□ -1.54
USP28-201ENST00000003302 Q5VSD8 79 aa5.42□□□□□ -1.54
USP28-201ENST00000003302 C10orf95Q9H7T3 257 aa5.39□□□□□ -1.55
USP28-201ENST00000003302 MT1HL1P0DM35 61 aa5.36□□□□□ -1.55
USP28-201ENST00000003302 KRTAP25-1Q3LHN0 102 aa5.36□□□□□ -1.55
USP28-201ENST00000003302 RPL37P61927 97 aaKnown RBP5.35□□□□□ -1.55
USP28-201ENST00000003302 KRTAP4-5Q9BYR2 181 aa5.34□□□□□ -1.55
USP28-201ENST00000003302 FAT4Q6V0I7 4981 aa5.34□□□□□ -1.55
USP28-201ENST00000003302 MUC17Q685J3 4493 aa5.34□□□□□ -1.55
USP28-201ENST00000003302 KRTAP12-2P59991 146 aa5.32□□□□□ -1.56
USP28-201ENST00000003302 TPRXLQ17RH7 258 aa5.32□□□□□ -1.56
USP28-201ENST00000003302 HERC1Q15751 4861 aa5.31□□□□□ -1.56
USP28-201ENST00000003302 HERC2O95714 4834 aa5.31□□□□□ -1.56
USP28-201ENST00000003302 PCLOQ9Y6V0 5065 aa5.29□□□□□ -1.56
USP28-201ENST00000003302 S4R3F8 94 aa5.28□□□□□ -1.56
USP28-201ENST00000003302 ROMO1P60602 79 aa5.24□□□□□ -1.57
USP28-201ENST00000003302 RNF213Q63HN8 5207 aa5.22□□□□□ -1.57
USP28-201ENST00000003302 LORP23490 312 aaPredicted RBP5.21□□□□□ -1.58
USP28-201ENST00000003302 H3BS24 57 aa5.21□□□□□ -1.58
USP28-201ENST00000003302 KRTAP12-1P59990 96 aa5.2□□□□□ -1.58
USP28-201ENST00000003302 SPINT4Q6UDR6 99 aa5.2□□□□□ -1.58
USP28-201ENST00000003302 KRTAP4-1Q9BYQ7 146 aa5.18□□□□□ -1.58
USP28-201ENST00000003302 K7ERS5 55 aa5.13□□□□□ -1.59
USP28-201ENST00000003302 FLGP20930 4061 aaPredicted RBP5.05□□□□□ -1.6
USP28-201ENST00000003302 UBR4Q5T4S7 5183 aa5.03□□□□□ -1.6
USP28-201ENST00000003302 BIRC6Q9NR09 4857 aa5.03□□□□□ -1.6
USP28-201ENST00000003302 HMCN2Q8NDA2 5059 aa5.03□□□□□ -1.6
USP28-201ENST00000003302 M0QZ58 72 aa5.02□□□□□ -1.61
USP28-201ENST00000003302 KRTAP19-2Q3LHN2 52 aa4.99□□□□□ -1.61
USP28-201ENST00000003302 KRTAP15-1Q3LI76 137 aa4.97□□□□□ -1.61
USP28-201ENST00000003302 NDUFAF8A1L188 74 aa4.95□□□□□ -1.62
USP28-201ENST00000003302 R4GN34 69 aa4.94□□□□□ -1.62
USP28-201ENST00000003302 J3QL48 77 aa4.77□□□□□ -1.65
USP28-201ENST00000003302 SEC61BP60468 96 aaKnown RBP4.76□□□□□ -1.65
USP28-201ENST00000003302 USH2AO75445 5202 aa4.74□□□□□ -1.65
USP28-201ENST00000003302 CAMK2N1Q7Z7J9 78 aa4.68□□□□□ -1.66
USP28-201ENST00000003302 LCE2CQ5TA81 110 aa4.67□□□□□ -1.66
USP28-201ENST00000003302 PLAC4Q8WY50 150 aa4.67□□□□□ -1.66
USP28-201ENST00000003302 KMT2DO14686 5537 aa4.66□□□□□ -1.66
USP28-201ENST00000003302 KRTAP19-1Q8IUB9 90 aa4.58□□□□□ -1.68
USP28-201ENST00000003302 MT1FP04733 61 aa4.5□□□□□ -1.69
USP28-201ENST00000003302 MT1HP80294 61 aa4.48□□□□□ -1.69
USP28-201ENST00000003302 M0R2T5 61 aa4.44□□□□□ -1.7
USP28-201ENST00000003302 TNP1P09430 55 aa4.43□□□□□ -1.7
USP28-201ENST00000003302 MT2AP02795 61 aa4.43□□□□□ -1.7
USP28-201ENST00000003302 SPRR2GQ9BYE4 73 aa4.43□□□□□ -1.7
USP28-201ENST00000003302 LCE3AQ5TA76 89 aa4.42□□□□□ -1.7
USP28-201ENST00000003302 KRTAP9-8Q9BYQ0 159 aa4.42□□□□□ -1.7
USP28-201ENST00000003302 PP632Q6XCG6 107 aa4.38□□□□□ -1.71
USP28-201ENST00000003302 KRTAP10-10P60014 251 aa4.38□□□□□ -1.71
USP28-201ENST00000003302 FSIP2Q5CZC0 6907 aa4.38□□□□□ -1.71
USP28-201ENST00000003302 SPRR5A0A1B0GTR4 108 aa4.31□□□□□ -1.72
USP28-201ENST00000003302 MT1BP07438 61 aa4.31□□□□□ -1.72
USP28-201ENST00000003302 LUZP6Q538Z0 58 aa4.31□□□□□ -1.72
USP28-201ENST00000003302 KRTAP10-5P60370 271 aa4.31□□□□□ -1.72
USP28-201ENST00000003302 MT1XP80297 61 aa4.3□□□□□ -1.72
USP28-201ENST00000003302 KRTAP10-7P60409 375 aaPredicted RBP4.28□□□□□ -1.72
USP28-201ENST00000003302 KRTAP19-8Q3LI54 63 aa4.19□□□□□ -1.74
USP28-201ENST00000003302 KRTAP9-3Q9BYQ3 159 aa4.19□□□□□ -1.74
USP28-201ENST00000003302 KRTAP23-1A1A580 65 aa4.16□□□□□ -1.74
USP28-201ENST00000003302 KRTAP8-1Q8IUC2 63 aa4.15□□□□□ -1.74
USP28-201ENST00000003302 LCE2BO14633 110 aa4.13□□□□□ -1.75
USP28-201ENST00000003302 KRTAP4-8A0A0G2JLE6 195 aa4.12□□□□□ -1.75
USP28-201ENST00000003302 KRTAP4-8Q9BYQ9 185 aa4.12□□□□□ -1.75
USP28-201ENST00000003302 KRTAP10-12P60413 245 aa4.11□□□□□ -1.75
USP28-201ENST00000003302 KRTAP12-3P60328 96 aa4.1□□□□□ -1.75
USP28-201ENST00000003302 SSPOA2VEC9 5147 aa4.08□□□□□ -1.76
USP28-201ENST00000003302 A0A0A0MQY5 61 aa4.05□□□□□ -1.76
USP28-201ENST00000003302 DSTQ03001 7570 aaKnown RBP4.05□□□□□ -1.76
USP28-201ENST00000003302 MUC12Q9UKN1 5478 aa4.04□□□□□ -1.76
USP28-201ENST00000003302 KRTAP4-7Q9BYR0 210 aa4.03□□□□□ -1.76
USP28-201ENST00000003302 KRTAP19-5Q3LI72 72 aa4.02□□□□□ -1.77
USP28-201ENST00000003302 LCE2AQ5TA79 106 aaPredicted RBP4.02□□□□□ -1.77
USP28-201ENST00000003302 FCGBPQ9Y6R7 5405 aaPredicted RBP4.01□□□□□ -1.77
USP28-201ENST00000003302 KRTAP9-6A8MVA2 160 aa4□□□□□ -1.77
USP28-201ENST00000003302 KRTAP19-7Q3SYF9 63 aa3.86□□□□□ -1.79
USP28-201ENST00000003302 LCE3CQ5T5A8 94 aa3.86□□□□□ -1.79
USP28-201ENST00000003302 PRO2289Q9P1D8 64 aa3.79□□□□□ -1.8
USP28-201ENST00000003302 SYNE1Q8NF91 8797 aaKnown RBP3.78□□□□□ -1.8
USP28-201ENST00000003302 KRTAP4-3Q9BYR4 195 aa3.76□□□□□ -1.81
USP28-201ENST00000003302 OBSCNQ5VST9 7968 aa3.75□□□□□ -1.81
USP28-201ENST00000003302 LOC100996750A0A140TA64 210 aa3.74□□□□□ -1.81
USP28-201ENST00000003302 MT1LQ93083 61 aa3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms