RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 TRACP01848 142 aa8.2□□□□□ -1.1
CLN3-264ENST00000637985 TRBV20-1A0A075B6N2 111 aa8.19□□□□□ -1.1
CLN3-264ENST00000637985 LINC00472Q9H8W2 130 aa8.19□□□□□ -1.1
CLN3-264ENST00000637985 SCGB1C2P0DMR2 95 aa8.18□□□□□ -1.1
CLN3-264ENST00000637985 KRTAP16-1A8MUX0 517 aa8.16□□□□□ -1.1
CLN3-264ENST00000637985 MUC12Q9UKN1 5478 aa8.16□□□□□ -1.1
CLN3-264ENST00000637985 RBM3P98179 157 aaKnown RBP8.15□□□□□ -1.1
CLN3-264ENST00000637985 DEFB116Q30KQ4 102 aa8.15□□□□□ -1.1
CLN3-264ENST00000637985 KRTAP20-1Q3LI63 56 aa8.14□□□□□ -1.11
CLN3-264ENST00000637985 NOTCH2NLQ7Z3S9 236 aa8.13□□□□□ -1.11
CLN3-264ENST00000637985 DSCR8Q96T75 97 aa8.13□□□□□ -1.11
CLN3-264ENST00000637985 IGHV6-1A0A0B4J1U7 121 aa8.11□□□□□ -1.11
CLN3-264ENST00000637985 C21orf62-AS1Q17RA5 79 aa8.11□□□□□ -1.11
CLN3-264ENST00000637985 VPS25Q9BRG1 176 aa8.11□□□□□ -1.11
CLN3-264ENST00000637985 BAALC-AS2P0C853 105 aa8.1□□□□□ -1.11
CLN3-264ENST00000637985 C8orf87E5RJ46 101 aa8.09□□□□□ -1.11
CLN3-264ENST00000637985 C9JAW5 83 aa8.08□□□□□ -1.12
CLN3-264ENST00000637985 A0A1B0GVX0 72 aa8.07□□□□□ -1.12
CLN3-264ENST00000637985 J3KT08 172 aa8.06□□□□□ -1.12
CLN3-264ENST00000637985 M0R143 59 aa8.05□□□□□ -1.12
CLN3-264ENST00000637985 LOC105371267A0A1B0GV96 52 aa8.04□□□□□ -1.12
CLN3-264ENST00000637985 ATXN8Q156A1 80 aa8.04□□□□□ -1.12
CLN3-264ENST00000637985 Q6ZQT0 140 aa8.04□□□□□ -1.12
CLN3-264ENST00000637985 RBM12B-AS1Q9P1G2 102 aa8.04□□□□□ -1.12
CLN3-264ENST00000637985 FAM236DA0A1B0GTK5 79 aa8.03□□□□□ -1.12
CLN3-264ENST00000637985 FAM236CP0DP71 79 aa8.03□□□□□ -1.12
CLN3-264ENST00000637985 JMJD7-PLA2G4BH0Y9G9 81 aa8.02□□□□□ -1.13
CLN3-264ENST00000637985 HRES1P13985 223 aa8.02□□□□□ -1.13
CLN3-264ENST00000637985 MPLKIPQ8TAP9 179 aa8.02□□□□□ -1.13
CLN3-264ENST00000637985 A0A1B0GW54 56 aa8.01□□□□□ -1.13
CLN3-264ENST00000637985 SMIM6P0DI80 62 aa8.01□□□□□ -1.13
CLN3-264ENST00000637985 NDUFB1O75438 58 aa7.99□□□□□ -1.13
CLN3-264ENST00000637985 LOC110117498A0A087WWA1 95 aa7.98□□□□□ -1.13
CLN3-264ENST00000637985 PDE6GP18545 87 aa7.98□□□□□ -1.13
CLN3-264ENST00000637985 ZCCHC13Q8WW36 166 aaKnown RBP7.97□□□□□ -1.13
CLN3-264ENST00000637985 NAA38Q9BRA0 125 aaKnown RBP7.97□□□□□ -1.13
CLN3-264ENST00000637985 LYRM7Q5U5X0 104 aa7.94□□□□□ -1.14
CLN3-264ENST00000637985 Q8N9P0 234 aaPredicted RBP7.94□□□□□ -1.14
CLN3-264ENST00000637985 A8MWP4 228 aa7.93□□□□□ -1.14
CLN3-264ENST00000637985 MTURNQ8N3F0 131 aa7.93□□□□□ -1.14
CLN3-264ENST00000637985 C8orf17Q9NRJ1 99 aa7.91□□□□□ -1.14
CLN3-264ENST00000637985 SPINK7P58062 85 aa7.9□□□□□ -1.14
CLN3-264ENST00000637985 C14orf132Q9NPU4 83 aa7.9□□□□□ -1.14
CLN3-264ENST00000637985 IGKV3D-7A0A0C4DH55 119 aa7.89□□□□□ -1.15
CLN3-264ENST00000637985 TSTD3H0UI37 97 aa7.87□□□□□ -1.15
CLN3-264ENST00000637985 NREPQ16612 68 aa7.87□□□□□ -1.15
CLN3-264ENST00000637985 Q6ZVQ6 151 aa7.85□□□□□ -1.15
CLN3-264ENST00000637985 PRR15Q8IV56 129 aa7.85□□□□□ -1.15
CLN3-264ENST00000637985 BATFQ16520 125 aa7.84□□□□□ -1.15
CLN3-264ENST00000637985 MDN1Q9NU22 5596 aa7.81□□□□□ -1.16
CLN3-264ENST00000637985 C9orf118A6NHY6 69 aa7.8□□□□□ -1.16
CLN3-264ENST00000637985 H3BT86 120 aa7.8□□□□□ -1.16
CLN3-264ENST00000637985 TMEM254Q8TBM7 123 aa7.79□□□□□ -1.16
CLN3-264ENST00000637985 MMP24-AS1A0A0U1RRL7 71 aa7.78□□□□□ -1.16
CLN3-264ENST00000637985 WFDC13Q8IUB5 93 aa7.78□□□□□ -1.16
CLN3-264ENST00000637985 MRPL34Q9BQ48 92 aaKnown RBP7.78□□□□□ -1.16
CLN3-264ENST00000637985 KMT2DO14686 5537 aa7.77□□□□□ -1.17
CLN3-264ENST00000637985 A0A1W2PPM0 123 aa7.76□□□□□ -1.17
CLN3-264ENST00000637985 hDV103S1A0JD37 113 aa7.75□□□□□ -1.17
CLN3-264ENST00000637985 TAX1BP3O14907 124 aa7.75□□□□□ -1.17
CLN3-264ENST00000637985 K7EQZ3 153 aa7.74□□□□□ -1.17
CLN3-264ENST00000637985 KRTAP2-3P0C7H8 128 aa7.74□□□□□ -1.17
CLN3-264ENST00000637985 KRTAP5-9P26371 169 aa7.74□□□□□ -1.17
CLN3-264ENST00000637985 KRTAP2-4Q9BYR9 128 aa7.74□□□□□ -1.17
CLN3-264ENST00000637985 BPY2O14599 106 aa7.71□□□□□ -1.18
CLN3-264ENST00000637985 NDUFS5O43920 106 aa7.7□□□□□ -1.18
CLN3-264ENST00000637985 A6NN06 94 aa7.65□□□□□ -1.18
CLN3-264ENST00000637985 H1FX-AS1Q4G0G2 97 aa7.64□□□□□ -1.19
CLN3-264ENST00000637985 SPCS1Q9Y6A9 102 aa7.64□□□□□ -1.19
CLN3-264ENST00000637985 IGKV2D-30A0A075B6S6 120 aa7.61□□□□□ -1.19
CLN3-264ENST00000637985 IGKV2-30P06310 120 aa7.61□□□□□ -1.19
CLN3-264ENST00000637985 Q5W150 140 aa7.61□□□□□ -1.19
CLN3-264ENST00000637985 CASC2Q6XLA1 102 aa7.61□□□□□ -1.19
CLN3-264ENST00000637985 C7orf65Q6ZTY9 151 aa7.61□□□□□ -1.19
CLN3-264ENST00000637985 Q8N9L7 120 aa7.59□□□□□ -1.19
CLN3-264ENST00000637985 SMCPP49901 116 aaPredicted RBP7.58□□□□□ -1.2
CLN3-264ENST00000637985 HCG22E2RYF7 251 aa7.57□□□□□ -1.2
CLN3-264ENST00000637985 CXCL6P80162 114 aa7.55□□□□□ -1.2
CLN3-264ENST00000637985 COL5A1-AS1Q5SY13 56 aa7.55□□□□□ -1.2
CLN3-264ENST00000637985 UBL5Q9BZL1 73 aa7.55□□□□□ -1.2
CLN3-264ENST00000637985 PCP4L1A6NKN8 68 aa7.53□□□□□ -1.2
CLN3-264ENST00000637985 PRO0461Q9UI25 63 aa7.53□□□□□ -1.2
CLN3-264ENST00000637985 K7EP34 96 aa7.49□□□□□ -1.21
CLN3-264ENST00000637985 C4orf26Q17RF5 130 aa7.48□□□□□ -1.21
CLN3-264ENST00000637985 MT1BP07438 61 aa7.47□□□□□ -1.21
CLN3-264ENST00000637985 KRTAP10-5P60370 271 aa7.45□□□□□ -1.22
CLN3-264ENST00000637985 KRTAP2-2Q9BYT5 123 aa7.45□□□□□ -1.22
CLN3-264ENST00000637985 KRTAP2-1Q9BYU5 128 aa7.45□□□□□ -1.22
CLN3-264ENST00000637985 GTF2H5Q6ZYL4 71 aa7.41□□□□□ -1.22
CLN3-264ENST00000637985 GPR98Q8WXG9 6306 aa7.4□□□□□ -1.22
CLN3-264ENST00000637985 TP53AIP1Q9HCN2 124 aa7.4□□□□□ -1.22
CLN3-264ENST00000637985 F8W1H4 67 aa7.38□□□□□ -1.23
CLN3-264ENST00000637985 Q5VV11 94 aa7.38□□□□□ -1.23
CLN3-264ENST00000637985 SPRR2EP22531 72 aa7.37□□□□□ -1.23
CLN3-264ENST00000637985 SPRR2BP35325 72 aa7.37□□□□□ -1.23
CLN3-264ENST00000637985 SPRR2AP35326 72 aa7.37□□□□□ -1.23
CLN3-264ENST00000637985 KRTAP3-1Q9BYR8 98 aa7.37□□□□□ -1.23
CLN3-264ENST00000637985 C5orf47Q569G3 176 aa7.36□□□□□ -1.23
CLN3-264ENST00000637985 C1orf64Q8NEQ6 169 aa7.35□□□□□ -1.23
CLN3-264ENST00000637985 S4R3F8 94 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms