RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 DCHS1Q96JQ0 3298 aa3.26□□□□□ -1.89
SCN1A-216ENST00000637968 C10orf95Q9H7T3 257 aa3.25□□□□□ -1.89
SCN1A-216ENST00000637968 ZFHX4Q86UP3 3567 aa3.25□□□□□ -1.89
SCN1A-216ENST00000637968 KRTAP13-3Q3SY46 172 aa3.25□□□□□ -1.89
SCN1A-216ENST00000637968 SMR3BP02814 79 aaPredicted RBP3.24□□□□□ -1.89
SCN1A-216ENST00000637968 LRBAP50851 2863 aa3.24□□□□□ -1.89
SCN1A-216ENST00000637968 UBR5O95071 2799 aaPredicted RBP3.23□□□□□ -1.89
SCN1A-216ENST00000637968 FLNCQ14315 2725 aa3.22□□□□□ -1.89
SCN1A-216ENST00000637968 TPRXLQ17RH7 258 aa3.22□□□□□ -1.89
SCN1A-216ENST00000637968 C9orf92A6NGG3 77 aa3.21□□□□□ -1.89
SCN1A-216ENST00000637968 DMXL1Q9Y485 3027 aa3.21□□□□□ -1.9
SCN1A-216ENST00000637968 ITPR2Q14571 2701 aa3.21□□□□□ -1.9
SCN1A-216ENST00000637968 HIVEP1P15822 2718 aa3.2□□□□□ -1.9
SCN1A-216ENST00000637968 NSD1Q96L73 2696 aaPredicted RBP3.2□□□□□ -1.9
SCN1A-216ENST00000637968 DMXL2Q8TDJ6 3036 aa3.19□□□□□ -1.9
SCN1A-216ENST00000637968 DMBT1Q9UGM3 2413 aaPredicted RBP3.18□□□□□ -1.9
SCN1A-216ENST00000637968 SPENQ96T58 3664 aaKnown RBP3.18□□□□□ -1.9
SCN1A-216ENST00000637968 PLAC4Q8WY50 150 aa3.18□□□□□ -1.9
SCN1A-216ENST00000637968 TENM4Q6N022 2769 aa3.18□□□□□ -1.9
SCN1A-216ENST00000637968 ADGRG4Q8IZF6 3080 aa3.17□□□□□ -1.9
SCN1A-216ENST00000637968 LAMA5O15230 3695 aa3.17□□□□□ -1.9
SCN1A-216ENST00000637968 STAB2Q8WWQ8 2551 aa3.16□□□□□ -1.9
SCN1A-216ENST00000637968 NBEAL2Q6ZNJ1 2754 aa3.16□□□□□ -1.9
SCN1A-216ENST00000637968 SMG1Q96Q15 3661 aaKnown RBP3.16□□□□□ -1.9
SCN1A-216ENST00000637968 M0R2T5 61 aa3.15□□□□□ -1.9
SCN1A-216ENST00000637968 CSMD1Q96PZ7 3565 aa3.15□□□□□ -1.91
SCN1A-216ENST00000637968 KMT2BQ9UMN6 2715 aaPredicted RBP3.14□□□□□ -1.91
SCN1A-216ENST00000637968 KRTAP13-1Q8IUC0 172 aa3.14□□□□□ -1.91
SCN1A-216ENST00000637968 APCP25054 2843 aa3.13□□□□□ -1.91
SCN1A-216ENST00000637968 COL12A1Q99715 3063 aa3.13□□□□□ -1.91
SCN1A-216ENST00000637968 S4R3F8 94 aa3.12□□□□□ -1.91
SCN1A-216ENST00000637968 ATMQ13315 3056 aa3.12□□□□□ -1.91
SCN1A-216ENST00000637968 BOD1L1Q8NFC6 3051 aa3.11□□□□□ -1.91
SCN1A-216ENST00000637968 RELNP78509 3460 aa3.11□□□□□ -1.91
SCN1A-216ENST00000637968 Q5VSD8 79 aa3.1□□□□□ -1.91
SCN1A-216ENST00000637968 SVEP1Q4LDE5 3571 aa3.08□□□□□ -1.92
SCN1A-216ENST00000637968 ASH1LQ9NR48 2969 aaKnown RBP3.08□□□□□ -1.92
SCN1A-216ENST00000637968 KRTAP1-5Q9BYS1 174 aa3.07□□□□□ -1.92
SCN1A-216ENST00000637968 KRTAP10-1P60331 282 aa3.07□□□□□ -1.92
SCN1A-216ENST00000637968 UTP20O75691 2785 aaKnown RBP3.07□□□□□ -1.92
SCN1A-216ENST00000637968 KRTAP10-2P60368 255 aa3.05□□□□□ -1.92
SCN1A-216ENST00000637968 NF1P21359 2839 aa3.05□□□□□ -1.92
SCN1A-216ENST00000637968 NIPBLQ6KC79 2804 aaeCLIP3.04□□□□□ -1.92
SCN1A-216ENST00000637968 ALMS1Q8TCU4 4167 aa3.03□□□□□ -1.92
SCN1A-216ENST00000637968 HRNRQ86YZ3 2850 aaPredicted RBP3.01□□□□□ -1.93
SCN1A-216ENST00000637968 PRO2289Q9P1D8 64 aa3.01□□□□□ -1.93
SCN1A-216ENST00000637968 CUBNO60494 3623 aa3□□□□□ -1.93
SCN1A-216ENST00000637968 KRTAP3-3Q9BYR6 98 aa3□□□□□ -1.93
SCN1A-216ENST00000637968 KRTAP3-2Q9BYR7 98 aa3□□□□□ -1.93
SCN1A-216ENST00000637968 R4GN34 69 aa3□□□□□ -1.93
SCN1A-216ENST00000637968 DCHS2Q6V1P9 2916 aa2.98□□□□□ -1.93
SCN1A-216ENST00000637968 CRYBG3Q68DQ2 2970 aa2.98□□□□□ -1.93
SCN1A-216ENST00000637968 XP32Q5T750 250 aa2.97□□□□□ -1.93
SCN1A-216ENST00000637968 Q6ZRN7 208 aaPredicted RBP2.97□□□□□ -1.93
SCN1A-216ENST00000637968 M0QZ58 72 aa2.97□□□□□ -1.93
SCN1A-216ENST00000637968 TENM2Q9NT68 2774 aa2.97□□□□□ -1.93
SCN1A-216ENST00000637968 CELSR2Q9HCU4 2923 aa2.96□□□□□ -1.93
SCN1A-216ENST00000637968 PP632Q6XCG6 107 aa2.96□□□□□ -1.94
SCN1A-216ENST00000637968 KRTAP12-2P59991 146 aa2.96□□□□□ -1.94
SCN1A-216ENST00000637968 SRRM2Q9UQ35 2752 aaKnown RBP2.96□□□□□ -1.94
SCN1A-216ENST00000637968 KRTAP10-8P60410 259 aa2.96□□□□□ -1.94
SCN1A-216ENST00000637968 KRTAP13-4Q3LI77 160 aa2.94□□□□□ -1.94
SCN1A-216ENST00000637968 CELSR1Q9NYQ6 3014 aa2.94□□□□□ -1.94
SCN1A-216ENST00000637968 ZANQ9Y493 2812 aa2.93□□□□□ -1.94
SCN1A-216ENST00000637968 KRTAP13-2Q52LG2 175 aa2.92□□□□□ -1.94
SCN1A-216ENST00000637968 VPS13CQ709C8 3753 aa2.92□□□□□ -1.94
SCN1A-216ENST00000637968 KRTAP12-1P59990 96 aa2.92□□□□□ -1.94
SCN1A-216ENST00000637968 KRTAP3-1Q9BYR8 98 aa2.92□□□□□ -1.94
SCN1A-216ENST00000637968 CSMD2Q7Z408 3487 aa2.92□□□□□ -1.94
SCN1A-216ENST00000637968 TGP01266 2768 aa2.91□□□□□ -1.94
SCN1A-216ENST00000637968 KRTAP10-6P60371 365 aaPredicted RBP2.91□□□□□ -1.94
SCN1A-216ENST00000637968 INE1O15225 51 aa2.91□□□□□ -1.94
SCN1A-216ENST00000637968 BSNQ9UPA5 3926 aa2.91□□□□□ -1.94
SCN1A-216ENST00000637968 MXRA5Q9NR99 2828 aa2.9□□□□□ -1.94
SCN1A-216ENST00000637968 RPS29P62273 56 aaKnown RBP2.9□□□□□ -1.95
SCN1A-216ENST00000637968 TENM3Q9P273 2699 aa2.89□□□□□ -1.95
SCN1A-216ENST00000637968 FBN2P35556 2912 aa2.89□□□□□ -1.95
SCN1A-216ENST00000637968 OTOGQ6ZRI0 2925 aa2.87□□□□□ -1.95
SCN1A-216ENST00000637968 TENM1Q9UKZ4 2725 aa2.87□□□□□ -1.95
SCN1A-216ENST00000637968 PDZD2O15018 2839 aa2.81□□□□□ -1.96
SCN1A-216ENST00000637968 PKD1L1Q8TDX9 2849 aa2.8□□□□□ -1.96
SCN1A-216ENST00000637968 NBPF19A0A087WUL8 3843 aa2.79□□□□□ -1.96
SCN1A-216ENST00000637968 KRTAP23-1A1A580 65 aa2.78□□□□□ -1.97
SCN1A-216ENST00000637968 AKAP9Q99996 3911 aa2.77□□□□□ -1.97
SCN1A-216ENST00000637968 A0A1B0GVY2 172 aa2.77□□□□□ -1.97
SCN1A-216ENST00000637968 KRTAP1-4P0C5Y4 121 aa2.77□□□□□ -1.97
SCN1A-216ENST00000637968 TNP1P09430 55 aa2.75□□□□□ -1.97
SCN1A-216ENST00000637968 COL7A1Q02388 2944 aa2.71□□□□□ -1.98
SCN1A-216ENST00000637968 KRTAP17-1Q9BYP8 105 aa2.71□□□□□ -1.98
SCN1A-216ENST00000637968 LCE2BO14633 110 aa2.7□□□□□ -1.98
SCN1A-216ENST00000637968 MEGF8Q7Z7M0 2845 aa2.69□□□□□ -1.98
SCN1A-216ENST00000637968 FBN1P35555 2871 aaKnown RBP2.69□□□□□ -1.98
SCN1A-216ENST00000637968 VWFP04275 2813 aa2.68□□□□□ -1.98
SCN1A-216ENST00000637968 FBN3Q75N90 2809 aa2.68□□□□□ -1.98
SCN1A-216ENST00000637968 ZNF469Q96JG9 3925 aaPredicted RBP2.66□□□□□ -1.98
SCN1A-216ENST00000637968 KRTAP10-10P60014 251 aa2.58□□□□□ -2
SCN1A-216ENST00000637968 SPRR5A0A1B0GTR4 108 aa2.57□□□□□ -2
SCN1A-216ENST00000637968 ANK3Q12955 4377 aaKnown RBP2.54□□□□□ -2
SCN1A-216ENST00000637968 LCE2CQ5TA81 110 aa2.53□□□□□ -2
SCN1A-216ENST00000637968 LCE2AQ5TA79 106 aaPredicted RBP2.51□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 124.5 ms