RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 MOBPQ13875 183 aa2.5□□□□□ -2.01
SCN1A-214ENST00000637038 DNAH5Q8TE73 4624 aa2.5□□□□□ -2.01
SCN1A-214ENST00000637038 FAT2Q9NYQ8 4349 aa2.5□□□□□ -2.01
SCN1A-214ENST00000637038 APLNQ9ULZ1 77 aa2.49□□□□□ -2.01
SCN1A-214ENST00000637038 PRR4Q16378 134 aa2.49□□□□□ -2.01
SCN1A-214ENST00000637038 DEFB116Q30KQ4 102 aa2.49□□□□□ -2.01
SCN1A-214ENST00000637038 NDUFS5O43920 106 aa2.49□□□□□ -2.01
SCN1A-214ENST00000637038 A0A1W2PNN7 141 aa2.48□□□□□ -2.01
SCN1A-214ENST00000637038 LCA10Q71F78 164 aa2.48□□□□□ -2.01
SCN1A-214ENST00000637038 C9orf163Q8N9P6 203 aa2.48□□□□□ -2.01
SCN1A-214ENST00000637038 NBDYA0A0U1RRE5 68 aa2.48□□□□□ -2.01
SCN1A-214ENST00000637038 A0A1B0GVY2 172 aa2.48□□□□□ -2.01
SCN1A-214ENST00000637038 LRCOL1A6NCL2 159 aa2.48□□□□□ -2.01
SCN1A-214ENST00000637038 SRRM2Q9UQ35 2752 aaKnown RBP2.47□□□□□ -2.01
SCN1A-214ENST00000637038 PSPHP1O15172 72 aa2.47□□□□□ -2.01
SCN1A-214ENST00000637038 CHKB-CPT1BH3BT56 60 aa2.47□□□□□ -2.01
SCN1A-214ENST00000637038 IGLV9-49A0A0B4J1Y8 123 aa2.47□□□□□ -2.01
SCN1A-214ENST00000637038 PRR15LQ9BU68 103 aa2.47□□□□□ -2.01
SCN1A-214ENST00000637038 LINC00472Q9H8W2 130 aa2.47□□□□□ -2.01
SCN1A-214ENST00000637038 VPS13BQ7Z7G8 4022 aa2.46□□□□□ -2.02
SCN1A-214ENST00000637038 CHTF8P0CG12 524 aa2.45□□□□□ -2.02
SCN1A-214ENST00000637038 C7orf65Q6ZTY9 151 aa2.45□□□□□ -2.02
SCN1A-214ENST00000637038 KRTAP9-6A0A140TA67 174 aa2.45□□□□□ -2.02
SCN1A-214ENST00000637038 A6NED7 52 aa2.45□□□□□ -2.02
SCN1A-214ENST00000637038 C8orf17Q9NRJ1 99 aa2.45□□□□□ -2.02
SCN1A-214ENST00000637038 IGLV7-46A0A075B6I9 117 aa2.45□□□□□ -2.02
SCN1A-214ENST00000637038 IGHV6-1A0A0B4J1U7 121 aa2.45□□□□□ -2.02
SCN1A-214ENST00000637038 A0A0G2JQZ4 141 aa2.45□□□□□ -2.02
SCN1A-214ENST00000637038 MMP24-AS1A0A0U1RRL7 71 aa2.45□□□□□ -2.02
SCN1A-214ENST00000637038 COA5Q86WW8 74 aa2.45□□□□□ -2.02
SCN1A-214ENST00000637038 HYDINQ4G0P3 5121 aa2.45□□□□□ -2.02
SCN1A-214ENST00000637038 LOC101927531A0A1B0GV80 90 aa2.45□□□□□ -2.02
SCN1A-214ENST00000637038 A0A1B0GVX0 72 aa2.45□□□□□ -2.02
SCN1A-214ENST00000637038 IGLV5-52A0A0A0MRZ9 124 aa2.44□□□□□ -2.02
SCN1A-214ENST00000637038 Q6ZR54 194 aa2.44□□□□□ -2.02
SCN1A-214ENST00000637038 MRPL34Q9BQ48 92 aaKnown RBP2.44□□□□□ -2.02
SCN1A-214ENST00000637038 LINC01554Q52M75 96 aa2.44□□□□□ -2.02
SCN1A-214ENST00000637038 PCOTHQ58A44 107 aa2.43□□□□□ -2.02
SCN1A-214ENST00000637038 Q75L30 129 aa2.43□□□□□ -2.02
SCN1A-214ENST00000637038 LINC00483Q53H64 154 aa2.43□□□□□ -2.02
SCN1A-214ENST00000637038 KRTAP1-5Q9BYS1 174 aa2.43□□□□□ -2.02
SCN1A-214ENST00000637038 PKHD1P08F94 4074 aa2.43□□□□□ -2.02
SCN1A-214ENST00000637038 Q8N9P0 234 aaPredicted RBP2.42□□□□□ -2.02
SCN1A-214ENST00000637038 SPACA4Q8TDM5 124 aa2.42□□□□□ -2.02
SCN1A-214ENST00000637038 PKHD1L1Q86WI1 4243 aa2.42□□□□□ -2.02
SCN1A-214ENST00000637038 XP32Q5T750 250 aa2.42□□□□□ -2.02
SCN1A-214ENST00000637038 ATP11AUNQ6ZP68 121 aa2.42□□□□□ -2.02
SCN1A-214ENST00000637038 SPTSSBQ8NFR3 76 aa2.42□□□□□ -2.02
SCN1A-214ENST00000637038 ZNF861PO60384 105 aa2.42□□□□□ -2.02
SCN1A-214ENST00000637038 Q5VV11 94 aa2.42□□□□□ -2.02
SCN1A-214ENST00000637038 RTL8CO15255 209 aa2.42□□□□□ -2.02
SCN1A-214ENST00000637038 PANO1I0J062 215 aa2.41□□□□□ -2.02
SCN1A-214ENST00000637038 KRTAP13-1Q8IUC0 172 aa2.41□□□□□ -2.02
SCN1A-214ENST00000637038 A0A087WTM6 91 aa2.41□□□□□ -2.02
SCN1A-214ENST00000637038 ACYP2P14621 99 aa2.41□□□□□ -2.02
SCN1A-214ENST00000637038 SSBP3-AS1Q7Z2R9 100 aa2.41□□□□□ -2.02
SCN1A-214ENST00000637038 SACSQ9NZJ4 4579 aa2.41□□□□□ -2.02
SCN1A-214ENST00000637038 SPINK6Q6UWN8 80 aa2.4□□□□□ -2.02
SCN1A-214ENST00000637038 LINC01558Q9Y6Z2 57 aa2.4□□□□□ -2.02
SCN1A-214ENST00000637038 CDC42SE1Q9NRR8 79 aa2.4□□□□□ -2.03
SCN1A-214ENST00000637038 PLAC8Q9NZF1 115 aa2.4□□□□□ -2.03
SCN1A-214ENST00000637038 PSORS1C2Q9UIG4 136 aa2.4□□□□□ -2.03
SCN1A-214ENST00000637038 ASB16-AS1Q495Z4 193 aa2.39□□□□□ -2.03
SCN1A-214ENST00000637038 SPAG11AQ6PDA7 123 aa2.39□□□□□ -2.03
SCN1A-214ENST00000637038 CIRBP-AS1Q8TBR5 109 aa2.39□□□□□ -2.03
SCN1A-214ENST00000637038 KRTAP11-1Q8IUC1 163 aa2.39□□□□□ -2.03
SCN1A-214ENST00000637038 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP2.39□□□□□ -2.03
SCN1A-214ENST00000637038 LRP1BQ9NZR2 4599 aa2.39□□□□□ -2.03
SCN1A-214ENST00000637038 Q6ZRN7 208 aaPredicted RBP2.38□□□□□ -2.03
SCN1A-214ENST00000637038 Q96NJ1 140 aa2.38□□□□□ -2.03
SCN1A-214ENST00000637038 DNHD1Q96M86 4753 aa2.38□□□□□ -2.03
SCN1A-214ENST00000637038 IGLV7-43P04211 117 aa2.38□□□□□ -2.03
SCN1A-214ENST00000637038 PRAC1Q96KF2 57 aa2.37□□□□□ -2.03
SCN1A-214ENST00000637038 HRES1P13985 223 aa2.37□□□□□ -2.03
SCN1A-214ENST00000637038 ADM2Q7Z4H4 148 aa2.36□□□□□ -2.03
SCN1A-214ENST00000637038 KRTAP4-2Q9BYR5 136 aa2.36□□□□□ -2.03
SCN1A-214ENST00000637038 A0A1B0GU69 56 aa2.35□□□□□ -2.03
SCN1A-214ENST00000637038 APOBP04114 4563 aaKnown RBP2.34□□□□□ -2.03
SCN1A-214ENST00000637038 MEGF8Q7Z7M0 2845 aa2.34□□□□□ -2.03
SCN1A-214ENST00000637038 TNXBP22105 4242 aa2.34□□□□□ -2.03
SCN1A-214ENST00000637038 DMBT1Q9UGM3 2413 aaPredicted RBP2.34□□□□□ -2.03
SCN1A-214ENST00000637038 DMAC1Q96GE9 116 aa2.34□□□□□ -2.04
SCN1A-214ENST00000637038 ANAPC11Q9NYG5 84 aa2.34□□□□□ -2.04
SCN1A-214ENST00000637038 KRTAP4-8A0A0G2JLE6 195 aa2.34□□□□□ -2.04
SCN1A-214ENST00000637038 KRTAP19-4Q3LI73 84 aa2.33□□□□□ -2.04
SCN1A-214ENST00000637038 NOTCH2NLQ7Z3S9 236 aa2.33□□□□□ -2.04
SCN1A-214ENST00000637038 Q5W150 140 aa2.32□□□□□ -2.04
SCN1A-214ENST00000637038 UQCR11O14957 56 aa2.32□□□□□ -2.04
SCN1A-214ENST00000637038 IGKV2-30P06310 120 aa2.32□□□□□ -2.04
SCN1A-214ENST00000637038 HSPG2P98160 4391 aa2.32□□□□□ -2.04
SCN1A-214ENST00000637038 IGKV2D-30A0A075B6S6 120 aa2.31□□□□□ -2.04
SCN1A-214ENST00000637038 A0A087X002 238 aa2.31□□□□□ -2.04
SCN1A-214ENST00000637038 SPINK7P58062 85 aa2.31□□□□□ -2.04
SCN1A-214ENST00000637038 RETNLBQ9BQ08 111 aa2.31□□□□□ -2.04
SCN1A-214ENST00000637038 STAB2Q8WWQ8 2551 aa2.31□□□□□ -2.04
SCN1A-214ENST00000637038 FAT3Q8TDW7 4589 aa2.3□□□□□ -2.04
SCN1A-214ENST00000637038 SPINK1P00995 79 aa2.3□□□□□ -2.04
SCN1A-214ENST00000637038 SEC61BP60468 96 aaKnown RBP2.3□□□□□ -2.04
SCN1A-214ENST00000637038 MIR22HGQ0VDD5 57 aa2.3□□□□□ -2.04
SCN1A-214ENST00000637038 TYMSOSQ8TAI1 123 aa2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 131.9 ms