RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 LAMA1P25391 3075 aa3.36□□□□□ -1.87
SCN1A-212ENST00000636194 KRTAP11-1Q8IUC1 163 aa3.35□□□□□ -1.87
SCN1A-212ENST00000636194 Q6ZRN7 208 aaPredicted RBP3.35□□□□□ -1.87
SCN1A-212ENST00000636194 NBEAQ8NFP9 2946 aa3.34□□□□□ -1.87
SCN1A-212ENST00000636194 PRUNE2Q8WUY3 3088 aa3.33□□□□□ -1.88
SCN1A-212ENST00000636194 KRTAP29-1A8MX34 341 aaPredicted RBP3.33□□□□□ -1.88
SCN1A-212ENST00000636194 UTRNP46939 3433 aa3.33□□□□□ -1.88
SCN1A-212ENST00000636194 KRTAP1-5Q9BYS1 174 aa3.33□□□□□ -1.88
SCN1A-212ENST00000636194 PKD1L1Q8TDX9 2849 aa3.32□□□□□ -1.88
SCN1A-212ENST00000636194 CYSTM1Q9H1C7 97 aa3.32□□□□□ -1.88
SCN1A-212ENST00000636194 VPS13AQ96RL7 3174 aa3.32□□□□□ -1.88
SCN1A-212ENST00000636194 TACC2O95359 2948 aa3.32□□□□□ -1.88
SCN1A-212ENST00000636194 KRTAP10-10P60014 251 aa3.31□□□□□ -1.88
SCN1A-212ENST00000636194 REV3LO60673 3130 aa3.31□□□□□ -1.88
SCN1A-212ENST00000636194 TENM4Q6N022 2769 aa3.31□□□□□ -1.88
SCN1A-212ENST00000636194 ZZEF1O43149 2961 aa3.31□□□□□ -1.88
SCN1A-212ENST00000636194 ATMQ13315 3056 aa3.3□□□□□ -1.88
SCN1A-212ENST00000636194 ZANQ9Y493 2812 aa3.29□□□□□ -1.88
SCN1A-212ENST00000636194 CELSR1Q9NYQ6 3014 aa3.28□□□□□ -1.88
SCN1A-212ENST00000636194 FREM2Q5SZK8 3169 aa3.27□□□□□ -1.89
SCN1A-212ENST00000636194 A0A1B0GVY2 172 aa3.27□□□□□ -1.89
SCN1A-212ENST00000636194 DCHS2Q6V1P9 2916 aa3.25□□□□□ -1.89
SCN1A-212ENST00000636194 ADGRG4Q8IZF6 3080 aa3.25□□□□□ -1.89
SCN1A-212ENST00000636194 COL7A1Q02388 2944 aa3.24□□□□□ -1.89
SCN1A-212ENST00000636194 BOD1L1Q8NFC6 3051 aa3.24□□□□□ -1.89
SCN1A-212ENST00000636194 TPRXLQ17RH7 258 aa3.24□□□□□ -1.89
SCN1A-212ENST00000636194 XIRP2A4UGR9 3374 aa3.23□□□□□ -1.89
SCN1A-212ENST00000636194 DNAH14Q0VDD8 3507 aa3.21□□□□□ -1.9
SCN1A-212ENST00000636194 USP34Q70CQ2 3546 aa3.2□□□□□ -1.9
SCN1A-212ENST00000636194 KRTAP21-3Q3LHN1 58 aa3.2□□□□□ -1.9
SCN1A-212ENST00000636194 MXRA5Q9NR99 2828 aa3.19□□□□□ -1.9
SCN1A-212ENST00000636194 HTTP42858 3142 aa3.18□□□□□ -1.9
SCN1A-212ENST00000636194 KRTAP13-2Q52LG2 175 aa3.18□□□□□ -1.9
SCN1A-212ENST00000636194 UNC80Q8N2C7 3258 aa3.18□□□□□ -1.9
SCN1A-212ENST00000636194 XP32Q5T750 250 aa3.17□□□□□ -1.9
SCN1A-212ENST00000636194 KRTAP12-2P59991 146 aa3.17□□□□□ -1.9
SCN1A-212ENST00000636194 DMXL1Q9Y485 3027 aa3.16□□□□□ -1.9
SCN1A-212ENST00000636194 MEGF8Q7Z7M0 2845 aa3.16□□□□□ -1.9
SCN1A-212ENST00000636194 RANBP2P49792 3224 aaKnown RBP3.14□□□□□ -1.91
SCN1A-212ENST00000636194 H0YAA0 97 aa3.13□□□□□ -1.91
SCN1A-212ENST00000636194 MKI67P46013 3256 aaKnown RBP3.12□□□□□ -1.91
SCN1A-212ENST00000636194 KRTAP13-1Q8IUC0 172 aa3.12□□□□□ -1.91
SCN1A-212ENST00000636194 KRTAP15-1Q3LI76 137 aa3.11□□□□□ -1.91
SCN1A-212ENST00000636194 CELSR3Q9NYQ7 3312 aa3.1□□□□□ -1.91
SCN1A-212ENST00000636194 INE1O15225 51 aa3.1□□□□□ -1.91
SCN1A-212ENST00000636194 KRTAP13-4Q3LI77 160 aa3.08□□□□□ -1.92
SCN1A-212ENST00000636194 COL6A3P12111 3177 aa3.07□□□□□ -1.92
SCN1A-212ENST00000636194 SZT2Q5T011 3432 aa3.07□□□□□ -1.92
SCN1A-212ENST00000636194 FBN2P35556 2912 aa3.07□□□□□ -1.92
SCN1A-212ENST00000636194 SPEGQ15772 3267 aa3.06□□□□□ -1.92
SCN1A-212ENST00000636194 VCANP13611 3396 aa3.06□□□□□ -1.92
SCN1A-212ENST00000636194 CFAP47Q6ZTR5 3102 aa3.06□□□□□ -1.92
SCN1A-212ENST00000636194 ZFHX4Q86UP3 3567 aa3.05□□□□□ -1.92
SCN1A-212ENST00000636194 ZFHX3Q15911 3703 aa3.04□□□□□ -1.92
SCN1A-212ENST00000636194 KRTAP10-6P60371 365 aaPredicted RBP3.04□□□□□ -1.92
SCN1A-212ENST00000636194 NBPF19A0A087WUL8 3843 aa3.04□□□□□ -1.92
SCN1A-212ENST00000636194 CRCT1Q9UGL9 99 aa3.01□□□□□ -1.93
SCN1A-212ENST00000636194 SPTBN5Q9NRC6 3674 aaKnown RBP3.01□□□□□ -1.93
SCN1A-212ENST00000636194 HRNRQ86YZ3 2850 aaPredicted RBP3.01□□□□□ -1.93
SCN1A-212ENST00000636194 KRTAP13-3Q3SY46 172 aa3.01□□□□□ -1.93
SCN1A-212ENST00000636194 LAMA3Q16787 3333 aa3.01□□□□□ -1.93
SCN1A-212ENST00000636194 OTOGQ6ZRI0 2925 aa3□□□□□ -1.93
SCN1A-212ENST00000636194 FBN3Q75N90 2809 aa2.98□□□□□ -1.93
SCN1A-212ENST00000636194 KRTAP1-4P0C5Y4 121 aa2.95□□□□□ -1.94
SCN1A-212ENST00000636194 KRTAP7-1Q8IUC3 87 aa2.94□□□□□ -1.94
SCN1A-212ENST00000636194 BRCA2P51587 3418 aa2.93□□□□□ -1.94
SCN1A-212ENST00000636194 KRTAP10-7P60409 375 aaPredicted RBP2.87□□□□□ -1.95
SCN1A-212ENST00000636194 KRTAP10-12P60413 245 aa2.86□□□□□ -1.95
SCN1A-212ENST00000636194 KRTAP12-1P59990 96 aa2.86□□□□□ -1.95
SCN1A-212ENST00000636194 LOC400499M0QZD8 3231 aa2.84□□□□□ -1.95
SCN1A-212ENST00000636194 MYO15AQ9UKN7 3530 aa2.83□□□□□ -1.96
SCN1A-212ENST00000636194 DMDP11532 3685 aa2.82□□□□□ -1.96
SCN1A-212ENST00000636194 EYSQ5T1H1 3165 aa2.82□□□□□ -1.96
SCN1A-212ENST00000636194 FBN1P35555 2871 aaKnown RBP2.8□□□□□ -1.96
SCN1A-212ENST00000636194 KRTAP23-1A1A580 65 aa2.8□□□□□ -1.96
SCN1A-212ENST00000636194 KRTAP10-5P60370 271 aa2.8□□□□□ -1.96
SCN1A-212ENST00000636194 ASPMQ8IZT6 3477 aa2.8□□□□□ -1.96
SCN1A-212ENST00000636194 SPENQ96T58 3664 aaKnown RBP2.78□□□□□ -1.96
SCN1A-212ENST00000636194 WDFY3Q8IZQ1 3526 aa2.77□□□□□ -1.97
SCN1A-212ENST00000636194 CDH23Q9H251 3354 aa2.75□□□□□ -1.97
SCN1A-212ENST00000636194 LAMA5O15230 3695 aa2.74□□□□□ -1.97
SCN1A-212ENST00000636194 SMG1Q96Q15 3661 aaKnown RBP2.73□□□□□ -1.97
SCN1A-212ENST00000636194 KRTAP12-3P60328 96 aa2.72□□□□□ -1.97
SCN1A-212ENST00000636194 RELNP78509 3460 aa2.7□□□□□ -1.98
SCN1A-212ENST00000636194 AKAP9Q99996 3911 aa2.69□□□□□ -1.98
SCN1A-212ENST00000636194 KRTAP8-1Q8IUC2 63 aa2.66□□□□□ -1.98
SCN1A-212ENST00000636194 TRRAPQ9Y4A5 3859 aa2.65□□□□□ -1.99
SCN1A-212ENST00000636194 VPS13CQ709C8 3753 aa2.62□□□□□ -1.99
SCN1A-212ENST00000636194 DCHS1Q96JQ0 3298 aa2.61□□□□□ -1.99
SCN1A-212ENST00000636194 LYSTQ99698 3801 aa2.59□□□□□ -2
SCN1A-212ENST00000636194 LORP23490 312 aaPredicted RBP2.58□□□□□ -2
SCN1A-212ENST00000636194 BSNQ9UPA5 3926 aa2.57□□□□□ -2
SCN1A-212ENST00000636194 CSMD3Q7Z407 3707 aa2.57□□□□□ -2
SCN1A-212ENST00000636194 ALMS1Q8TCU4 4167 aa2.56□□□□□ -2
SCN1A-212ENST00000636194 CSMD1Q96PZ7 3565 aa2.56□□□□□ -2
SCN1A-212ENST00000636194 LCE3AQ5TA76 89 aa2.54□□□□□ -2
SCN1A-212ENST00000636194 KRTAP3-1Q9BYR8 98 aa2.54□□□□□ -2
SCN1A-212ENST00000636194 MUC3AQ02505 3323 aa2.52□□□□□ -2.01
SCN1A-212ENST00000636194 KRTAP17-1Q9BYP8 105 aa2.52□□□□□ -2.01
SCN1A-212ENST00000636194 CMYA5Q8N3K9 4069 aa2.51□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 104.7 ms