RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 MKI67P46013 3256 aaKnown RBP2.81□□□□□ -1.96
SCN1A-209ENST00000635750 FREM2Q5SZK8 3169 aa2.81□□□□□ -1.96
SCN1A-209ENST00000635750 KALRNO60229 2985 aa2.81□□□□□ -1.96
SCN1A-209ENST00000635750 ITPR1Q14643 2758 aa2.8□□□□□ -1.96
SCN1A-209ENST00000635750 TENM3Q9P273 2699 aa2.8□□□□□ -1.96
SCN1A-209ENST00000635750 DSPP15924 2871 aaKnown RBP2.8□□□□□ -1.96
SCN1A-209ENST00000635750 KRTAP12-2P59991 146 aa2.8□□□□□ -1.96
SCN1A-209ENST00000635750 VPS13AQ96RL7 3174 aa2.79□□□□□ -1.96
SCN1A-209ENST00000635750 LRBAP50851 2863 aa2.79□□□□□ -1.96
SCN1A-209ENST00000635750 FRYLO94915 3013 aa2.79□□□□□ -1.96
SCN1A-209ENST00000635750 LAMA1P25391 3075 aa2.79□□□□□ -1.96
SCN1A-209ENST00000635750 CHD9Q3L8U1 2897 aa2.78□□□□□ -1.96
SCN1A-209ENST00000635750 ASH1LQ9NR48 2969 aaKnown RBP2.78□□□□□ -1.96
SCN1A-209ENST00000635750 HIVEP1P15822 2718 aa2.78□□□□□ -1.96
SCN1A-209ENST00000635750 FLNCQ14315 2725 aa2.78□□□□□ -1.96
SCN1A-209ENST00000635750 KRTAP15-1Q3LI76 137 aa2.77□□□□□ -1.97
SCN1A-209ENST00000635750 KRTAP13-4Q3LI77 160 aa2.77□□□□□ -1.97
SCN1A-209ENST00000635750 DMXL2Q8TDJ6 3036 aa2.75□□□□□ -1.97
SCN1A-209ENST00000635750 COL12A1Q99715 3063 aa2.75□□□□□ -1.97
SCN1A-209ENST00000635750 KRTAP3-3Q9BYR6 98 aa2.75□□□□□ -1.97
SCN1A-209ENST00000635750 KRTAP3-2Q9BYR7 98 aa2.75□□□□□ -1.97
SCN1A-209ENST00000635750 RANBP2P49792 3224 aaKnown RBP2.75□□□□□ -1.97
SCN1A-209ENST00000635750 LAMA3Q16787 3333 aa2.72□□□□□ -1.97
SCN1A-209ENST00000635750 USP34Q70CQ2 3546 aa2.72□□□□□ -1.97
SCN1A-209ENST00000635750 TENM4Q6N022 2769 aa2.72□□□□□ -1.97
SCN1A-209ENST00000635750 NF1P21359 2839 aa2.71□□□□□ -1.97
SCN1A-209ENST00000635750 TGP01266 2768 aa2.71□□□□□ -1.98
SCN1A-209ENST00000635750 CELSR2Q9HCU4 2923 aa2.7□□□□□ -1.98
SCN1A-209ENST00000635750 TNRC18O15417 2968 aaPredicted RBP2.69□□□□□ -1.98
SCN1A-209ENST00000635750 COL6A3P12111 3177 aa2.68□□□□□ -1.98
SCN1A-209ENST00000635750 CFAP47Q6ZTR5 3102 aa2.68□□□□□ -1.98
SCN1A-209ENST00000635750 SPEGQ15772 3267 aa2.68□□□□□ -1.98
SCN1A-209ENST00000635750 PDZD2O15018 2839 aa2.68□□□□□ -1.98
SCN1A-209ENST00000635750 CELSR1Q9NYQ6 3014 aa2.67□□□□□ -1.98
SCN1A-209ENST00000635750 BOD1L1Q8NFC6 3051 aa2.66□□□□□ -1.98
SCN1A-209ENST00000635750 HTTP42858 3142 aa2.66□□□□□ -1.98
SCN1A-209ENST00000635750 VCANP13611 3396 aa2.66□□□□□ -1.98
SCN1A-209ENST00000635750 TACC2O95359 2948 aa2.66□□□□□ -1.98
SCN1A-209ENST00000635750 DNAH14Q0VDD8 3507 aa2.65□□□□□ -1.98
SCN1A-209ENST00000635750 BRCA2P51587 3418 aa2.65□□□□□ -1.98
SCN1A-209ENST00000635750 ATMQ13315 3056 aa2.65□□□□□ -1.99
SCN1A-209ENST00000635750 NIPBLQ6KC79 2804 aaeCLIP2.65□□□□□ -1.99
SCN1A-209ENST00000635750 ZZEF1O43149 2961 aa2.65□□□□□ -1.99
SCN1A-209ENST00000635750 KRTAP12-1P59990 96 aa2.65□□□□□ -1.99
SCN1A-209ENST00000635750 CRCT1Q9UGL9 99 aa2.64□□□□□ -1.99
SCN1A-209ENST00000635750 ADGRG4Q8IZF6 3080 aa2.64□□□□□ -1.99
SCN1A-209ENST00000635750 DCHS2Q6V1P9 2916 aa2.64□□□□□ -1.99
SCN1A-209ENST00000635750 INE1O15225 51 aa2.63□□□□□ -1.99
SCN1A-209ENST00000635750 NBPF19A0A087WUL8 3843 aa2.62□□□□□ -1.99
SCN1A-209ENST00000635750 CDH23Q9H251 3354 aa2.6□□□□□ -1.99
SCN1A-209ENST00000635750 ZANQ9Y493 2812 aa2.6□□□□□ -1.99
SCN1A-209ENST00000635750 NBEAQ8NFP9 2946 aa2.6□□□□□ -1.99
SCN1A-209ENST00000635750 TENM2Q9NT68 2774 aa2.59□□□□□ -1.99
SCN1A-209ENST00000635750 KRTAP10-12P60413 245 aa2.59□□□□□ -2
SCN1A-209ENST00000635750 ZFHX4Q86UP3 3567 aa2.58□□□□□ -2
SCN1A-209ENST00000635750 PKD1L1Q8TDX9 2849 aa2.57□□□□□ -2
SCN1A-209ENST00000635750 VWFP04275 2813 aa2.57□□□□□ -2
SCN1A-209ENST00000635750 KRTAP23-1A1A580 65 aa2.54□□□□□ -2
SCN1A-209ENST00000635750 DMXL1Q9Y485 3027 aa2.53□□□□□ -2
SCN1A-209ENST00000635750 KRTAP10-6P60371 365 aaPredicted RBP2.52□□□□□ -2.01
SCN1A-209ENST00000635750 SZT2Q5T011 3432 aa2.51□□□□□ -2.01
SCN1A-209ENST00000635750 FBN2P35556 2912 aa2.51□□□□□ -2.01
SCN1A-209ENST00000635750 LCE2DQ5TA82 110 aaPredicted RBP2.48□□□□□ -2.01
SCN1A-209ENST00000635750 EYSQ5T1H1 3165 aa2.48□□□□□ -2.01
SCN1A-209ENST00000635750 KRTAP12-3P60328 96 aa2.47□□□□□ -2.01
SCN1A-209ENST00000635750 LOC400499M0QZD8 3231 aa2.47□□□□□ -2.01
SCN1A-209ENST00000635750 KRTAP3-1Q9BYR8 98 aa2.47□□□□□ -2.01
SCN1A-209ENST00000635750 ASPMQ8IZT6 3477 aa2.46□□□□□ -2.02
SCN1A-209ENST00000635750 COL7A1Q02388 2944 aa2.46□□□□□ -2.02
SCN1A-209ENST00000635750 MXRA5Q9NR99 2828 aa2.45□□□□□ -2.02
SCN1A-209ENST00000635750 SPTBN5Q9NRC6 3674 aaKnown RBP2.45□□□□□ -2.02
SCN1A-209ENST00000635750 KRTAP8-1Q8IUC2 63 aa2.45□□□□□ -2.02
SCN1A-209ENST00000635750 WDFY3Q8IZQ1 3526 aa2.45□□□□□ -2.02
SCN1A-209ENST00000635750 KRTAP10-5P60370 271 aa2.44□□□□□ -2.02
SCN1A-209ENST00000635750 LCE2CQ5TA81 110 aa2.43□□□□□ -2.02
SCN1A-209ENST00000635750 HRNRQ86YZ3 2850 aaPredicted RBP2.43□□□□□ -2.02
SCN1A-209ENST00000635750 MEGF8Q7Z7M0 2845 aa2.43□□□□□ -2.02
SCN1A-209ENST00000635750 ZFHX3Q15911 3703 aa2.41□□□□□ -2.02
SCN1A-209ENST00000635750 SRRM2Q9UQ35 2752 aaKnown RBP2.41□□□□□ -2.02
SCN1A-209ENST00000635750 RYR1P21817 5038 aa2.41□□□□□ -2.02
SCN1A-209ENST00000635750 LORP23490 312 aaPredicted RBP2.39□□□□□ -2.03
SCN1A-209ENST00000635750 FBN3Q75N90 2809 aa2.39□□□□□ -2.03
SCN1A-209ENST00000635750 SPENQ96T58 3664 aaKnown RBP2.39□□□□□ -2.03
SCN1A-209ENST00000635750 LCE3AQ5TA76 89 aa2.38□□□□□ -2.03
SCN1A-209ENST00000635750 DCHS1Q96JQ0 3298 aa2.37□□□□□ -2.03
SCN1A-209ENST00000635750 MT1HL1P0DM35 61 aa2.37□□□□□ -2.03
SCN1A-209ENST00000635750 LAMA5O15230 3695 aa2.36□□□□□ -2.03
SCN1A-209ENST00000635750 LCE2BO14633 110 aa2.36□□□□□ -2.03
SCN1A-209ENST00000635750 MYO15AQ9UKN7 3530 aa2.35□□□□□ -2.03
SCN1A-209ENST00000635750 PCLOQ9Y6V0 5065 aa2.34□□□□□ -2.03
SCN1A-209ENST00000635750 KRTAP10-7P60409 375 aaPredicted RBP2.32□□□□□ -2.04
SCN1A-209ENST00000635750 DMDP11532 3685 aa2.3□□□□□ -2.04
SCN1A-209ENST00000635750 CSMD1Q96PZ7 3565 aa2.3□□□□□ -2.04
SCN1A-209ENST00000635750 ALMS1Q8TCU4 4167 aa2.3□□□□□ -2.04
SCN1A-209ENST00000635750 SMG1Q96Q15 3661 aaKnown RBP2.29□□□□□ -2.04
SCN1A-209ENST00000635750 RELNP78509 3460 aa2.28□□□□□ -2.04
SCN1A-209ENST00000635750 KRTAP4-5Q9BYR2 181 aa2.28□□□□□ -2.04
SCN1A-209ENST00000635750 UBR4Q5T4S7 5183 aa2.28□□□□□ -2.04
SCN1A-209ENST00000635750 TRRAPQ9Y4A5 3859 aa2.25□□□□□ -2.05
SCN1A-209ENST00000635750 LCE2AQ5TA79 106 aaPredicted RBP2.24□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms