RNA–Protein interactions for RNA: ENST00000620854.4

NEDD9-216, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 5 BASIC

Gene NEDD9, Length 4,086 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-216ENST00000620854 LCA10Q71F78 164 aa4.27□□□□□ -1.73
NEDD9-216ENST00000620854 TGP01266 2768 aa4.27□□□□□ -1.73
NEDD9-216ENST00000620854 LINC00472Q9H8W2 130 aa4.26□□□□□ -1.73
NEDD9-216ENST00000620854 UQCR11O14957 56 aa4.26□□□□□ -1.73
NEDD9-216ENST00000620854 PANO1I0J062 215 aa4.25□□□□□ -1.73
NEDD9-216ENST00000620854 CD164Q04900 197 aa4.25□□□□□ -1.73
NEDD9-216ENST00000620854 MMP24-AS1A0A0U1RRL7 71 aa4.24□□□□□ -1.73
NEDD9-216ENST00000620854 SPANXA2-OT1Q8N9U9 137 aa4.24□□□□□ -1.73
NEDD9-216ENST00000620854 SMR3BP02814 79 aaPredicted RBP4.24□□□□□ -1.73
NEDD9-216ENST00000620854 C9orf92A6NGG3 77 aa4.23□□□□□ -1.73
NEDD9-216ENST00000620854 MIR22HGQ0VDD5 57 aa4.23□□□□□ -1.73
NEDD9-216ENST00000620854 KRTAP21-3Q3LHN1 58 aa4.23□□□□□ -1.73
NEDD9-216ENST00000620854 Q8N1X5 172 aa4.23□□□□□ -1.73
NEDD9-216ENST00000620854 A0A087X002 238 aa4.22□□□□□ -1.73
NEDD9-216ENST00000620854 NOTCH2NLQ7Z3S9 236 aa4.22□□□□□ -1.73
NEDD9-216ENST00000620854 DNAH9Q9NYC9 4486 aa4.22□□□□□ -1.73
NEDD9-216ENST00000620854 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.22□□□□□ -1.73
NEDD9-216ENST00000620854 IGLV7-46A0A075B6I9 117 aa4.22□□□□□ -1.73
NEDD9-216ENST00000620854 SPINK7P58062 85 aa4.22□□□□□ -1.73
NEDD9-216ENST00000620854 SSBP3-AS1Q7Z2R9 100 aa4.22□□□□□ -1.73
NEDD9-216ENST00000620854 KTN1-AS1Q86SY8 53 aa4.21□□□□□ -1.74
NEDD9-216ENST00000620854 RBM12B-AS1Q9P1G2 102 aa4.21□□□□□ -1.74
NEDD9-216ENST00000620854 IGLV7-43P04211 117 aa4.21□□□□□ -1.74
NEDD9-216ENST00000620854 FBN3Q75N90 2809 aa4.21□□□□□ -1.74
NEDD9-216ENST00000620854 HRES1P13985 223 aa4.19□□□□□ -1.74
NEDD9-216ENST00000620854 Q75L30 129 aa4.19□□□□□ -1.74
NEDD9-216ENST00000620854 HUWE1Q7Z6Z7 4374 aaKnown RBP4.19□□□□□ -1.74
NEDD9-216ENST00000620854 DNAH7Q8WXX0 4024 aa4.19□□□□□ -1.74
NEDD9-216ENST00000620854 FRAS1Q86XX4 4008 aa4.18□□□□□ -1.74
NEDD9-216ENST00000620854 CDC42SE1Q9NRR8 79 aa4.18□□□□□ -1.74
NEDD9-216ENST00000620854 SPINT4Q6UDR6 99 aa4.17□□□□□ -1.74
NEDD9-216ENST00000620854 LINC00304Q8N9R0 145 aa4.17□□□□□ -1.74
NEDD9-216ENST00000620854 DNAH1Q9P2D7 4330 aa4.16□□□□□ -1.74
NEDD9-216ENST00000620854 CMYA5Q8N3K9 4069 aa4.16□□□□□ -1.74
NEDD9-216ENST00000620854 SPRR1BP22528 89 aa4.16□□□□□ -1.74
NEDD9-216ENST00000620854 PRAC1Q96KF2 57 aa4.16□□□□□ -1.74
NEDD9-216ENST00000620854 Q5W150 140 aa4.15□□□□□ -1.74
NEDD9-216ENST00000620854 A6NN06 94 aa4.15□□□□□ -1.75
NEDD9-216ENST00000620854 LINC01558Q9Y6Z2 57 aa4.15□□□□□ -1.75
NEDD9-216ENST00000620854 A0A0D9SG42 100 aa4.14□□□□□ -1.75
NEDD9-216ENST00000620854 Q6ZR54 194 aa4.13□□□□□ -1.75
NEDD9-216ENST00000620854 ADM2Q7Z4H4 148 aa4.13□□□□□ -1.75
NEDD9-216ENST00000620854 MEGF8Q7Z7M0 2845 aa4.12□□□□□ -1.75
NEDD9-216ENST00000620854 PLAC8Q9NZF1 115 aa4.12□□□□□ -1.75
NEDD9-216ENST00000620854 KRTAP13-1Q8IUC0 172 aa4.11□□□□□ -1.75
NEDD9-216ENST00000620854 PLECQ15149 4684 aaKnown RBP4.1□□□□□ -1.75
NEDD9-216ENST00000620854 KRTAP10-2P60368 255 aa4.09□□□□□ -1.75
NEDD9-216ENST00000620854 LINC01554Q52M75 96 aa4.09□□□□□ -1.76
NEDD9-216ENST00000620854 ASB16-AS1Q495Z4 193 aa4.08□□□□□ -1.76
NEDD9-216ENST00000620854 Q6ZRN7 208 aaPredicted RBP4.07□□□□□ -1.76
NEDD9-216ENST00000620854 KMT2AQ03164 3969 aa4.06□□□□□ -1.76
NEDD9-216ENST00000620854 KRTAP10-1P60331 282 aa4.06□□□□□ -1.76
NEDD9-216ENST00000620854 CRIPTQ9P021 101 aa4.06□□□□□ -1.76
NEDD9-216ENST00000620854 J3QL48 77 aa4.06□□□□□ -1.76
NEDD9-216ENST00000620854 DNAH8Q96JB1 4490 aa4.05□□□□□ -1.76
NEDD9-216ENST00000620854 DNAH3Q8TD57 4116 aa4.05□□□□□ -1.76
NEDD9-216ENST00000620854 A0A1B0GU33 70 aa4.04□□□□□ -1.76
NEDD9-216ENST00000620854 H3BS24 57 aa4.04□□□□□ -1.76
NEDD9-216ENST00000620854 LINC00483Q53H64 154 aa4.03□□□□□ -1.76
NEDD9-216ENST00000620854 CSAG1Q6PB30 78 aa4.01□□□□□ -1.77
NEDD9-216ENST00000620854 DNAH17Q9UFH2 4485 aa4.01□□□□□ -1.77
NEDD9-216ENST00000620854 STARD9Q9P2P6 4700 aa4□□□□□ -1.77
NEDD9-216ENST00000620854 COX6B2Q6YFQ2 88 aa4□□□□□ -1.77
NEDD9-216ENST00000620854 KRTAP13-3Q3SY46 172 aa3.99□□□□□ -1.77
NEDD9-216ENST00000620854 DMAC1Q96GE9 116 aa3.99□□□□□ -1.77
NEDD9-216ENST00000620854 HECTD4Q9Y4D8 3996 aa3.99□□□□□ -1.77
NEDD9-216ENST00000620854 DNAH6Q9C0G6 4158 aa3.98□□□□□ -1.77
NEDD9-216ENST00000620854 Q5VSD8 79 aa3.96□□□□□ -1.77
NEDD9-216ENST00000620854 DNAH11Q96DT5 4516 aa3.95□□□□□ -1.78
NEDD9-216ENST00000620854 DNAH2Q9P225 4427 aa3.95□□□□□ -1.78
NEDD9-216ENST00000620854 SPATA8Q6RVD6 105 aa3.95□□□□□ -1.78
NEDD9-216ENST00000620854 PRKDCP78527 4128 aaKnown RBP3.94□□□□□ -1.78
NEDD9-216ENST00000620854 VPS13DQ5THJ4 4388 aa3.94□□□□□ -1.78
NEDD9-216ENST00000620854 KRTAP13-2Q52LG2 175 aa3.93□□□□□ -1.78
NEDD9-216ENST00000620854 ALMS1Q8TCU4 4167 aa3.92□□□□□ -1.78
NEDD9-216ENST00000620854 Q6ZSA8 131 aa3.91□□□□□ -1.78
NEDD9-216ENST00000620854 LRP1BQ9NZR2 4599 aa3.91□□□□□ -1.78
NEDD9-216ENST00000620854 CAMK2N1Q7Z7J9 78 aa3.87□□□□□ -1.79
NEDD9-216ENST00000620854 KRTAP16-1A8MUX0 517 aa3.87□□□□□ -1.79
NEDD9-216ENST00000620854 S4R3F8 94 aa3.86□□□□□ -1.79
NEDD9-216ENST00000620854 VPS13BQ7Z7G8 4022 aa3.86□□□□□ -1.79
NEDD9-216ENST00000620854 RPL37P61927 97 aaKnown RBP3.85□□□□□ -1.79
NEDD9-216ENST00000620854 H1FX-AS1Q4G0G2 97 aa3.85□□□□□ -1.79
NEDD9-216ENST00000620854 LCE2DQ5TA82 110 aaPredicted RBP3.84□□□□□ -1.79
NEDD9-216ENST00000620854 DYNC2H1Q8NCM8 4307 aaKnown RBP3.84□□□□□ -1.79
NEDD9-216ENST00000620854 LUZP6Q538Z0 58 aa3.84□□□□□ -1.79
NEDD9-216ENST00000620854 A0A0A0MQY5 61 aa3.83□□□□□ -1.8
NEDD9-216ENST00000620854 DNAH5Q8TE73 4624 aa3.83□□□□□ -1.8
NEDD9-216ENST00000620854 R4GN34 69 aa3.82□□□□□ -1.8
NEDD9-216ENST00000620854 H0YAA0 97 aa3.82□□□□□ -1.8
NEDD9-216ENST00000620854 FAT2Q9NYQ8 4349 aa3.82□□□□□ -1.8
NEDD9-216ENST00000620854 KRTAP1-4P0C5Y4 121 aa3.81□□□□□ -1.8
NEDD9-216ENST00000620854 ROMO1P60602 79 aa3.81□□□□□ -1.8
NEDD9-216ENST00000620854 DNHD1Q96M86 4753 aa3.78□□□□□ -1.8
NEDD9-216ENST00000620854 M0QZ58 72 aa3.78□□□□□ -1.8
NEDD9-216ENST00000620854 HYDINQ4G0P3 5121 aa3.78□□□□□ -1.81
NEDD9-216ENST00000620854 RPS29P62273 56 aaKnown RBP3.77□□□□□ -1.81
NEDD9-216ENST00000620854 PKHD1P08F94 4074 aa3.76□□□□□ -1.81
NEDD9-216ENST00000620854 A8MUU9 505 aa3.76□□□□□ -1.81
NEDD9-216ENST00000620854 FAT1Q14517 4588 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms