RNA–Protein interactions for RNA: ENST00000616053.4

TCF4-248, Transcript of transcription factor 4, humanhuman

TSL 5 BASIC

Gene TCF4, Length 8,140 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-248ENST00000616053 NBEAQ8NFP9 2946 aa6.98□□□□□ -1.29
TCF4-248ENST00000616053 DMXL1Q9Y485 3027 aa6.98□□□□□ -1.29
TCF4-248ENST00000616053 Q6ZRN7 208 aaPredicted RBP6.95□□□□□ -1.3
TCF4-248ENST00000616053 COL12A1Q99715 3063 aa6.95□□□□□ -1.3
TCF4-248ENST00000616053 NBEAL2Q6ZNJ1 2754 aa6.94□□□□□ -1.3
TCF4-248ENST00000616053 BOD1L1Q8NFC6 3051 aa6.94□□□□□ -1.3
TCF4-248ENST00000616053 Q5XG85 94 aa6.92□□□□□ -1.3
TCF4-248ENST00000616053 CRYBG3Q68DQ2 2970 aa6.91□□□□□ -1.3
TCF4-248ENST00000616053 ADGRG4Q8IZF6 3080 aa6.9□□□□□ -1.3
TCF4-248ENST00000616053 DMXL2Q8TDJ6 3036 aa6.9□□□□□ -1.3
TCF4-248ENST00000616053 KRTAP21-3Q3LHN1 58 aa6.89□□□□□ -1.31
TCF4-248ENST00000616053 CYSTM1Q9H1C7 97 aa6.88□□□□□ -1.31
TCF4-248ENST00000616053 KRTAP13-2Q52LG2 175 aa6.86□□□□□ -1.31
TCF4-248ENST00000616053 COL6A3P12111 3177 aa6.85□□□□□ -1.31
TCF4-248ENST00000616053 SZT2Q5T011 3432 aa6.84□□□□□ -1.32
TCF4-248ENST00000616053 ZZEF1O43149 2961 aa6.83□□□□□ -1.32
TCF4-248ENST00000616053 KRTAP29-1A8MX34 341 aaPredicted RBP6.81□□□□□ -1.32
TCF4-248ENST00000616053 TNRC18O15417 2968 aaPredicted RBP6.79□□□□□ -1.32
TCF4-248ENST00000616053 XP32Q5T750 250 aa6.78□□□□□ -1.32
TCF4-248ENST00000616053 KRTAP11-1Q8IUC1 163 aa6.75□□□□□ -1.33
TCF4-248ENST00000616053 CELSR2Q9HCU4 2923 aa6.75□□□□□ -1.33
TCF4-248ENST00000616053 USP34Q70CQ2 3546 aa6.75□□□□□ -1.33
TCF4-248ENST00000616053 TPRXLQ17RH7 258 aa6.74□□□□□ -1.33
TCF4-248ENST00000616053 VCANP13611 3396 aa6.74□□□□□ -1.33
TCF4-248ENST00000616053 PDZD2O15018 2839 aa6.72□□□□□ -1.33
TCF4-248ENST00000616053 SPTBN5Q9NRC6 3674 aaKnown RBP6.72□□□□□ -1.33
TCF4-248ENST00000616053 WDFY3Q8IZQ1 3526 aa6.71□□□□□ -1.34
TCF4-248ENST00000616053 SPEGQ15772 3267 aa6.71□□□□□ -1.34
TCF4-248ENST00000616053 SRRM2Q9UQ35 2752 aaKnown RBP6.71□□□□□ -1.34
TCF4-248ENST00000616053 ATMQ13315 3056 aa6.7□□□□□ -1.34
TCF4-248ENST00000616053 ASPMQ8IZT6 3477 aa6.68□□□□□ -1.34
TCF4-248ENST00000616053 NIPBLQ6KC79 2804 aaeCLIP6.68□□□□□ -1.34
TCF4-248ENST00000616053 NF1P21359 2839 aa6.65□□□□□ -1.34
TCF4-248ENST00000616053 DCHS2Q6V1P9 2916 aa6.63□□□□□ -1.35
TCF4-248ENST00000616053 CFAP47Q6ZTR5 3102 aa6.61□□□□□ -1.35
TCF4-248ENST00000616053 A6NN06 94 aa6.6□□□□□ -1.35
TCF4-248ENST00000616053 EYSQ5T1H1 3165 aa6.6□□□□□ -1.35
TCF4-248ENST00000616053 FLNCQ14315 2725 aa6.56□□□□□ -1.36
TCF4-248ENST00000616053 LAMA5O15230 3695 aa6.52□□□□□ -1.37
TCF4-248ENST00000616053 KRTAP12-2P59991 146 aa6.51□□□□□ -1.37
TCF4-248ENST00000616053 CRCT1Q9UGL9 99 aa6.51□□□□□ -1.37
TCF4-248ENST00000616053 CELSR1Q9NYQ6 3014 aa6.5□□□□□ -1.37
TCF4-248ENST00000616053 TENM1Q9UKZ4 2725 aa6.5□□□□□ -1.37
TCF4-248ENST00000616053 KRTAP13-1Q8IUC0 172 aa6.5□□□□□ -1.37
TCF4-248ENST00000616053 TENM3Q9P273 2699 aa6.48□□□□□ -1.37
TCF4-248ENST00000616053 HIVEP1P15822 2718 aa6.47□□□□□ -1.37
TCF4-248ENST00000616053 MYO15AQ9UKN7 3530 aa6.46□□□□□ -1.38
TCF4-248ENST00000616053 KRTAP15-1Q3LI76 137 aa6.45□□□□□ -1.38
TCF4-248ENST00000616053 RELNP78509 3460 aa6.42□□□□□ -1.38
TCF4-248ENST00000616053 ZFHX4Q86UP3 3567 aa6.41□□□□□ -1.38
TCF4-248ENST00000616053 FBN2P35556 2912 aa6.41□□□□□ -1.38
TCF4-248ENST00000616053 H0YAA0 97 aa6.4□□□□□ -1.38
TCF4-248ENST00000616053 KRTAP13-3Q3SY46 172 aa6.4□□□□□ -1.39
TCF4-248ENST00000616053 LOC400499M0QZD8 3231 aa6.39□□□□□ -1.39
TCF4-248ENST00000616053 KRTAP7-1Q8IUC3 87 aa6.39□□□□□ -1.39
TCF4-248ENST00000616053 ZANQ9Y493 2812 aa6.38□□□□□ -1.39
TCF4-248ENST00000616053 TGP01266 2768 aa6.37□□□□□ -1.39
TCF4-248ENST00000616053 TENM4Q6N022 2769 aa6.36□□□□□ -1.39
TCF4-248ENST00000616053 DCHS1Q96JQ0 3298 aa6.36□□□□□ -1.39
TCF4-248ENST00000616053 HRNRQ86YZ3 2850 aaPredicted RBP6.33□□□□□ -1.4
TCF4-248ENST00000616053 KRTAP1-4P0C5Y4 121 aa6.33□□□□□ -1.4
TCF4-248ENST00000616053 SPENQ96T58 3664 aaKnown RBP6.33□□□□□ -1.4
TCF4-248ENST00000616053 ZFHX3Q15911 3703 aa6.31□□□□□ -1.4
TCF4-248ENST00000616053 NBPF19A0A087WUL8 3843 aa6.26□□□□□ -1.41
TCF4-248ENST00000616053 MXRA5Q9NR99 2828 aa6.25□□□□□ -1.41
TCF4-248ENST00000616053 DMDP11532 3685 aa6.24□□□□□ -1.41
TCF4-248ENST00000616053 MUC3AQ02505 3323 aa6.2□□□□□ -1.42
TCF4-248ENST00000616053 KRTAP13-4Q3LI77 160 aa6.2□□□□□ -1.42
TCF4-248ENST00000616053 OTOGQ6ZRI0 2925 aa6.17□□□□□ -1.42
TCF4-248ENST00000616053 SMG1Q96Q15 3661 aaKnown RBP6.15□□□□□ -1.42
TCF4-248ENST00000616053 KRTAP10-6P60371 365 aaPredicted RBP6.15□□□□□ -1.42
TCF4-248ENST00000616053 COL7A1Q02388 2944 aa6.12□□□□□ -1.43
TCF4-248ENST00000616053 CSMD1Q96PZ7 3565 aa6.08□□□□□ -1.44
TCF4-248ENST00000616053 PKD1L1Q8TDX9 2849 aa6.05□□□□□ -1.44
TCF4-248ENST00000616053 TENM2Q9NT68 2774 aa6.02□□□□□ -1.45
TCF4-248ENST00000616053 VWFP04275 2813 aa6□□□□□ -1.45
TCF4-248ENST00000616053 VPS13CQ709C8 3753 aa5.97□□□□□ -1.45
TCF4-248ENST00000616053 AKAP9Q99996 3911 aa5.96□□□□□ -1.46
TCF4-248ENST00000616053 KRTAP10-12P60413 245 aa5.95□□□□□ -1.46
TCF4-248ENST00000616053 LORP23490 312 aaPredicted RBP5.92□□□□□ -1.46
TCF4-248ENST00000616053 KRTAP12-1P59990 96 aa5.88□□□□□ -1.47
TCF4-248ENST00000616053 MEGF8Q7Z7M0 2845 aa5.86□□□□□ -1.47
TCF4-248ENST00000616053 INE1O15225 51 aa5.84□□□□□ -1.47
TCF4-248ENST00000616053 CUBNO60494 3623 aa5.84□□□□□ -1.47
TCF4-248ENST00000616053 FBN1P35555 2871 aaKnown RBP5.83□□□□□ -1.48
TCF4-248ENST00000616053 KRTAP10-5P60370 271 aa5.83□□□□□ -1.48
TCF4-248ENST00000616053 BSNQ9UPA5 3926 aa5.81□□□□□ -1.48
TCF4-248ENST00000616053 FBN3Q75N90 2809 aa5.8□□□□□ -1.48
TCF4-248ENST00000616053 CSMD2Q7Z408 3487 aa5.79□□□□□ -1.48
TCF4-248ENST00000616053 KRTAP8-1Q8IUC2 63 aa5.79□□□□□ -1.48
TCF4-248ENST00000616053 SVEP1Q4LDE5 3571 aa5.68□□□□□ -1.5
TCF4-248ENST00000616053 KRTAP12-3P60328 96 aa5.67□□□□□ -1.5
TCF4-248ENST00000616053 TRRAPQ9Y4A5 3859 aa5.6□□□□□ -1.51
TCF4-248ENST00000616053 KRTAP10-7P60409 375 aaPredicted RBP5.6□□□□□ -1.51
TCF4-248ENST00000616053 CSMD3Q7Z407 3707 aa5.57□□□□□ -1.52
TCF4-248ENST00000616053 LCE3AQ5TA76 89 aa5.44□□□□□ -1.54
TCF4-248ENST00000616053 KRTAP3-1Q9BYR8 98 aa5.41□□□□□ -1.54
TCF4-248ENST00000616053 SPRR2FQ96RM1 72 aa5.38□□□□□ -1.55
TCF4-248ENST00000616053 ZNF469Q96JG9 3925 aaPredicted RBP5.34□□□□□ -1.55
TCF4-248ENST00000616053 LYSTQ99698 3801 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms