RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 ATP11AUNQ6ZP68 121 aa8.53□□□□□ -1.04
LSM4-206ENST00000600289 LCE2CQ5TA81 110 aa8.52□□□□□ -1.05
LSM4-206ENST00000600289 H3BT86 120 aa8.51□□□□□ -1.05
LSM4-206ENST00000600289 DSCR10P59022 87 aa8.51□□□□□ -1.05
LSM4-206ENST00000600289 KRTAP16-1A8MUX0 517 aa8.5□□□□□ -1.05
LSM4-206ENST00000600289 LINC00313P59037 77 aa8.5□□□□□ -1.05
LSM4-206ENST00000600289 J3KT08 172 aa8.49□□□□□ -1.05
LSM4-206ENST00000600289 DEFB116Q30KQ4 102 aa8.49□□□□□ -1.05
LSM4-206ENST00000600289 C14orf132Q9NPU4 83 aa8.48□□□□□ -1.05
LSM4-206ENST00000600289 A0A1B0GVX0 72 aa8.46□□□□□ -1.06
LSM4-206ENST00000600289 LORP23490 312 aaPredicted RBP8.46□□□□□ -1.06
LSM4-206ENST00000600289 C8orf87E5RJ46 101 aa8.45□□□□□ -1.06
LSM4-206ENST00000600289 MT1HP80294 61 aa8.44□□□□□ -1.06
LSM4-206ENST00000600289 COL5A1-AS1Q5SY13 56 aa8.44□□□□□ -1.06
LSM4-206ENST00000600289 NOTCH2NLQ7Z3S9 236 aa8.44□□□□□ -1.06
LSM4-206ENST00000600289 IGHV6-1A0A0B4J1U7 121 aa8.43□□□□□ -1.06
LSM4-206ENST00000600289 SPCS1Q9Y6A9 102 aa8.42□□□□□ -1.06
LSM4-206ENST00000600289 MTURNQ8N3F0 131 aa8.4□□□□□ -1.06
LSM4-206ENST00000600289 SSPOA2VEC9 5147 aa8.4□□□□□ -1.06
LSM4-206ENST00000600289 KRTAP10-6P60371 365 aaPredicted RBP8.39□□□□□ -1.07
LSM4-206ENST00000600289 NDUFB1O75438 58 aa8.38□□□□□ -1.07
LSM4-206ENST00000600289 A8MWP4 228 aa8.37□□□□□ -1.07
LSM4-206ENST00000600289 FLGP20930 4061 aaPredicted RBP8.36□□□□□ -1.07
LSM4-206ENST00000600289 NREPQ16612 68 aa8.35□□□□□ -1.07
LSM4-206ENST00000600289 SMCPP49901 116 aaPredicted RBP8.34□□□□□ -1.07
LSM4-206ENST00000600289 USH2AO75445 5202 aa8.33□□□□□ -1.08
LSM4-206ENST00000600289 K7EP34 96 aa8.33□□□□□ -1.08
LSM4-206ENST00000600289 COX6B2Q6YFQ2 88 aa8.33□□□□□ -1.08
LSM4-206ENST00000600289 IGKV3D-7A0A0C4DH55 119 aa8.32□□□□□ -1.08
LSM4-206ENST00000600289 PRO0461Q9UI25 63 aa8.32□□□□□ -1.08
LSM4-206ENST00000600289 Q8N9P0 234 aaPredicted RBP8.31□□□□□ -1.08
LSM4-206ENST00000600289 C8orf17Q9NRJ1 99 aa8.31□□□□□ -1.08
LSM4-206ENST00000600289 PRR15Q8IV56 129 aa8.3□□□□□ -1.08
LSM4-206ENST00000600289 FCGBPQ9Y6R7 5405 aaPredicted RBP8.28□□□□□ -1.08
LSM4-206ENST00000600289 PCP4L1A6NKN8 68 aa8.26□□□□□ -1.09
LSM4-206ENST00000600289 ZCCHC13Q8WW36 166 aaKnown RBP8.26□□□□□ -1.09
LSM4-206ENST00000600289 GTF2H5Q6ZYL4 71 aa8.25□□□□□ -1.09
LSM4-206ENST00000600289 Q6ZVQ6 151 aa8.24□□□□□ -1.09
LSM4-206ENST00000600289 MMP24-AS1A0A0U1RRL7 71 aa8.23□□□□□ -1.09
LSM4-206ENST00000600289 K7EQZ3 153 aa8.22□□□□□ -1.09
LSM4-206ENST00000600289 BPY2O14599 106 aa8.22□□□□□ -1.09
LSM4-206ENST00000600289 MPLKIPQ8TAP9 179 aa8.22□□□□□ -1.09
LSM4-206ENST00000600289 TMEM254Q8TBM7 123 aa8.22□□□□□ -1.09
LSM4-206ENST00000600289 HRES1P13985 223 aa8.21□□□□□ -1.1
LSM4-206ENST00000600289 SYNE2Q8WXH0 6885 aaKnown RBP8.21□□□□□ -1.1
LSM4-206ENST00000600289 F8W1H4 67 aa8.19□□□□□ -1.1
LSM4-206ENST00000600289 M0R2T5 61 aa8.19□□□□□ -1.1
LSM4-206ENST00000600289 MRPL34Q9BQ48 92 aaKnown RBP8.19□□□□□ -1.1
LSM4-206ENST00000600289 hDV103S1A0JD37 113 aa8.16□□□□□ -1.1
LSM4-206ENST00000600289 MACF1Q9UPN3 7388 aaKnown RBP8.15□□□□□ -1.1
LSM4-206ENST00000600289 LINC00846Q9NV44 126 aa8.15□□□□□ -1.1
LSM4-206ENST00000600289 RBM12B-AS1Q9P1G2 102 aa8.15□□□□□ -1.1
LSM4-206ENST00000600289 UBL5Q9BZL1 73 aa8.14□□□□□ -1.11
LSM4-206ENST00000600289 SPINK7P58062 85 aa8.13□□□□□ -1.11
LSM4-206ENST00000600289 FAM236DA0A1B0GTK5 79 aa8.1□□□□□ -1.11
LSM4-206ENST00000600289 FAM236CP0DP71 79 aa8.1□□□□□ -1.11
LSM4-206ENST00000600289 ETDBQ3ZM63 59 aa8.1□□□□□ -1.11
LSM4-206ENST00000600289 Q8N9L7 120 aa8.09□□□□□ -1.11
LSM4-206ENST00000600289 CASC2Q6XLA1 102 aa8.07□□□□□ -1.12
LSM4-206ENST00000600289 NDUFS5O43920 106 aa8.05□□□□□ -1.12
LSM4-206ENST00000600289 WFDC13Q8IUB5 93 aa8.04□□□□□ -1.12
LSM4-206ENST00000600289 CXCL6P80162 114 aa8.02□□□□□ -1.13
LSM4-206ENST00000600289 KRTAP19-1Q8IUB9 90 aa8.02□□□□□ -1.13
LSM4-206ENST00000600289 HCG22E2RYF7 251 aa8.01□□□□□ -1.13
LSM4-206ENST00000600289 Q5W150 140 aa7.99□□□□□ -1.13
LSM4-206ENST00000600289 ACYP1P07311 99 aa7.97□□□□□ -1.13
LSM4-206ENST00000600289 KRTAP9-8Q9BYQ0 159 aa7.97□□□□□ -1.13
LSM4-206ENST00000600289 FAM240AA0A1B0GVK7 77 aa7.96□□□□□ -1.14
LSM4-206ENST00000600289 C7orf65Q6ZTY9 151 aa7.95□□□□□ -1.14
LSM4-206ENST00000600289 IGKV2D-30A0A075B6S6 120 aa7.91□□□□□ -1.14
LSM4-206ENST00000600289 IGKV2-30P06310 120 aa7.91□□□□□ -1.14
LSM4-206ENST00000600289 TP53AIP1Q9HCN2 124 aa7.89□□□□□ -1.15
LSM4-206ENST00000600289 ATP5EP2Q5VTU8 51 aa7.88□□□□□ -1.15
LSM4-206ENST00000600289 MT2AP02795 61 aa7.87□□□□□ -1.15
LSM4-206ENST00000600289 A0A1B0GV90 55 aa7.85□□□□□ -1.15
LSM4-206ENST00000600289 H1FX-AS1Q4G0G2 97 aa7.85□□□□□ -1.15
LSM4-206ENST00000600289 KRTAP6-3Q3LI67 103 aa7.83□□□□□ -1.16
LSM4-206ENST00000600289 LCE2BO14633 110 aa7.82□□□□□ -1.16
LSM4-206ENST00000600289 MT1FP04733 61 aa7.8□□□□□ -1.16
LSM4-206ENST00000600289 LINC00643Q86TS7 51 aa7.77□□□□□ -1.17
LSM4-206ENST00000600289 NEBP20929 6669 aa7.76□□□□□ -1.17
LSM4-206ENST00000600289 C4orf26Q17RF5 130 aa7.76□□□□□ -1.17
LSM4-206ENST00000600289 KRTAP10-10P60014 251 aa7.73□□□□□ -1.17
LSM4-206ENST00000600289 HIST1H4AP62805 103 aaKnown RBP7.73□□□□□ -1.17
LSM4-206ENST00000600289 KRTAP9-3Q9BYQ3 159 aa7.72□□□□□ -1.17
LSM4-206ENST00000600289 TRAV22A0A0B4J277 110 aa7.71□□□□□ -1.18
LSM4-206ENST00000600289 KRTAP3-1Q9BYR8 98 aa7.69□□□□□ -1.18
LSM4-206ENST00000600289 CYP4F30PQ9H0H9 118 aa7.68□□□□□ -1.18
LSM4-206ENST00000600289 LOC101927531A0A1B0GV80 90 aa7.67□□□□□ -1.18
LSM4-206ENST00000600289 UQCRQO14949 82 aa7.67□□□□□ -1.18
LSM4-206ENST00000600289 J3QR89 54 aa7.66□□□□□ -1.18
LSM4-206ENST00000600289 KRTAP19-6Q3LI70 58 aa7.66□□□□□ -1.18
LSM4-206ENST00000600289 A0A087WVE0 104 aa7.65□□□□□ -1.18
LSM4-206ENST00000600289 KRTAP20-1Q3LI63 56 aa7.65□□□□□ -1.18
LSM4-206ENST00000600289 C1orf64Q8NEQ6 169 aa7.65□□□□□ -1.18
LSM4-206ENST00000600289 ATOX1O00244 68 aa7.63□□□□□ -1.19
LSM4-206ENST00000600289 MUC12Q9UKN1 5478 aa7.62□□□□□ -1.19
LSM4-206ENST00000600289 S4R3F8 94 aa7.6□□□□□ -1.19
LSM4-206ENST00000600289 H0Y9P7 68 aa7.59□□□□□ -1.19
LSM4-206ENST00000600289 OCR1Q9BZK8 76 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms