RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	TMEM256-PLSCR3	K7ERE1	68 aa		5.16	□□□□□ -1.58
LSM4-205	ENST00000597776	UQCR10	Q9UDW1	63 aa		5.16	□□□□□ -1.58
LSM4-205	ENST00000597776	TMA7	Q9Y2S6	64 aa	Known RBP	5.16	□□□□□ -1.58
LSM4-205	ENST00000597776		A0A1B0GVX0	72 aa		5.15	□□□□□ -1.59
LSM4-205	ENST00000597776		H3BQ85	93 aa		5.15	□□□□□ -1.59
LSM4-205	ENST00000597776	VPS25	Q9BRG1	176 aa		5.15	□□□□□ -1.59
LSM4-205	ENST00000597776	MACF1	Q9UPN3	7388 aa	Known RBP	5.14	□□□□□ -1.59
LSM4-205	ENST00000597776	C8orf87	E5RJ46	101 aa		5.14	□□□□□ -1.59
LSM4-205	ENST00000597776	COX6C	P09669	75 aa		5.13	□□□□□ -1.59
LSM4-205	ENST00000597776	UBE2V1	Q13404	147 aa		5.13	□□□□□ -1.59
LSM4-205	ENST00000597776	ZCCHC13	Q8WW36	166 aa	Known RBP	5.13	□□□□□ -1.59
LSM4-205	ENST00000597776	SPINK7	P58062	85 aa		5.12	□□□□□ -1.59
LSM4-205	ENST00000597776	MTURN	Q8N3F0	131 aa		5.11	□□□□□ -1.59
LSM4-205	ENST00000597776	RBM3	P98179	157 aa	Known RBP	5.09	□□□□□ -1.59
LSM4-205	ENST00000597776	DSCR8	Q96T75	97 aa		5.09	□□□□□ -1.59
LSM4-205	ENST00000597776	SYNE2	Q8WXH0	6885 aa	Known RBP	5.09	□□□□□ -1.59
LSM4-205	ENST00000597776		J3KT08	172 aa		5.07	□□□□□ -1.6
LSM4-205	ENST00000597776	WFDC13	Q8IUB5	93 aa		5.07	□□□□□ -1.6
LSM4-205	ENST00000597776	SCGB1C2	P0DMR2	95 aa		5.06	□□□□□ -1.6
LSM4-205	ENST00000597776	KRTAP19-6	Q3LI70	58 aa		5.06	□□□□□ -1.6
LSM4-205	ENST00000597776		Q6ZQT0	140 aa		5.06	□□□□□ -1.6
LSM4-205	ENST00000597776		Q8N9P0	234 aa	Predicted RBP	5.06	□□□□□ -1.6
LSM4-205	ENST00000597776		C9JAW5	83 aa		5.05	□□□□□ -1.6
LSM4-205	ENST00000597776		M0R143	59 aa		5.05	□□□□□ -1.6
LSM4-205	ENST00000597776	BAALC-AS2	P0C853	105 aa		5.05	□□□□□ -1.6
LSM4-205	ENST00000597776	NDUFB1	O75438	58 aa		5.04	□□□□□ -1.6
LSM4-205	ENST00000597776	LYRM7	Q5U5X0	104 aa		5.04	□□□□□ -1.6
LSM4-205	ENST00000597776	C8orf17	Q9NRJ1	99 aa		5.04	□□□□□ -1.6
LSM4-205	ENST00000597776		A8MWP4	228 aa		5.03	□□□□□ -1.6
LSM4-205	ENST00000597776	SMIM6	P0DI80	62 aa		5.03	□□□□□ -1.6
LSM4-205	ENST00000597776	IGKV3D-7	A0A0C4DH55	119 aa		5.02	□□□□□ -1.61
LSM4-205	ENST00000597776	C21orf62-AS1	Q17RA5	79 aa		5.02	□□□□□ -1.61
LSM4-205	ENST00000597776	LINC00846	Q9NV44	126 aa		5.02	□□□□□ -1.61
LSM4-205	ENST00000597776		Q6ZVQ6	151 aa		4.99	□□□□□ -1.61
LSM4-205	ENST00000597776	ATXN8	Q156A1	80 aa		4.98	□□□□□ -1.61
LSM4-205	ENST00000597776	NAA38	Q9BRA0	125 aa	Known RBP	4.98	□□□□□ -1.61
LSM4-205	ENST00000597776	LOC110117498	A0A087WWA1	95 aa		4.97	□□□□□ -1.61
LSM4-205	ENST00000597776	TSTD3	H0UI37	97 aa		4.96	□□□□□ -1.62
LSM4-205	ENST00000597776	JMJD7-PLA2G4B	H0Y9G9	81 aa		4.96	□□□□□ -1.62
LSM4-205	ENST00000597776	PRR15	Q8IV56	129 aa		4.96	□□□□□ -1.62
LSM4-205	ENST00000597776	C14orf132	Q9NPU4	83 aa		4.96	□□□□□ -1.62
LSM4-205	ENST00000597776	MMP24-AS1	A0A0U1RRL7	71 aa		4.95	□□□□□ -1.62
LSM4-205	ENST00000597776	H1FX-AS1	Q4G0G2	97 aa		4.95	□□□□□ -1.62
LSM4-205	ENST00000597776		A0A1B0GW54	56 aa		4.94	□□□□□ -1.62
LSM4-205	ENST00000597776	PDE6G	P18545	87 aa		4.93	□□□□□ -1.62
LSM4-205	ENST00000597776	TMEM254	Q8TBM7	123 aa		4.93	□□□□□ -1.62
LSM4-205	ENST00000597776	MRPL34	Q9BQ48	92 aa	Known RBP	4.93	□□□□□ -1.62
LSM4-205	ENST00000597776	NREP	Q16612	68 aa		4.92	□□□□□ -1.62
LSM4-205	ENST00000597776	NDUFS5	O43920	106 aa		4.91	□□□□□ -1.62
LSM4-205	ENST00000597776	KRTAP6-3	Q3LI67	103 aa		4.91	□□□□□ -1.62
LSM4-205	ENST00000597776	IGKV2D-30	A0A075B6S6	120 aa		4.9	□□□□□ -1.63
LSM4-205	ENST00000597776	hDV103S1	A0JD37	113 aa		4.9	□□□□□ -1.63
LSM4-205	ENST00000597776		K7EQZ3	153 aa		4.9	□□□□□ -1.63
LSM4-205	ENST00000597776	IGKV2-30	P06310	120 aa		4.9	□□□□□ -1.63
LSM4-205	ENST00000597776	BATF	Q16520	125 aa		4.9	□□□□□ -1.63
LSM4-205	ENST00000597776	LOC105371267	A0A1B0GV96	52 aa		4.88	□□□□□ -1.63
LSM4-205	ENST00000597776		Q5W150	140 aa		4.88	□□□□□ -1.63
LSM4-205	ENST00000597776	C9orf118	A6NHY6	69 aa		4.86	□□□□□ -1.63
LSM4-205	ENST00000597776		H3BT86	120 aa		4.86	□□□□□ -1.63
LSM4-205	ENST00000597776	C7orf65	Q6ZTY9	151 aa		4.86	□□□□□ -1.63
LSM4-205	ENST00000597776		A0A1W2PPM0	123 aa		4.85	□□□□□ -1.63
LSM4-205	ENST00000597776	TAX1BP3	O14907	124 aa		4.85	□□□□□ -1.63
LSM4-205	ENST00000597776	C4orf26	Q17RF5	130 aa		4.83	□□□□□ -1.64
LSM4-205	ENST00000597776	BPY2	O14599	106 aa		4.82	□□□□□ -1.64
LSM4-205	ENST00000597776		Q8N9L7	120 aa		4.82	□□□□□ -1.64
LSM4-205	ENST00000597776	C5orf47	Q569G3	176 aa		4.81	□□□□□ -1.64
LSM4-205	ENST00000597776	NEB	P20929	6669 aa		4.8	□□□□□ -1.64
LSM4-205	ENST00000597776	HCG22	E2RYF7	251 aa		4.8	□□□□□ -1.64
LSM4-205	ENST00000597776	CASC2	Q6XLA1	102 aa		4.79	□□□□□ -1.64
LSM4-205	ENST00000597776	FAM236A	A0A1B0GUQ0	79 aa		4.78	□□□□□ -1.64
LSM4-205	ENST00000597776	FAM236B	A0A1B0GV22	79 aa		4.78	□□□□□ -1.64
LSM4-205	ENST00000597776	MT1B	P07438	61 aa		4.78	□□□□□ -1.64
LSM4-205	ENST00000597776	SPCS1	Q9Y6A9	102 aa		4.78	□□□□□ -1.64
LSM4-205	ENST00000597776		A6NN06	94 aa		4.77	□□□□□ -1.65
LSM4-205	ENST00000597776	KRTAP3-1	Q9BYR8	98 aa		4.76	□□□□□ -1.65
LSM4-205	ENST00000597776	COL5A1-AS1	Q5SY13	56 aa		4.75	□□□□□ -1.65
LSM4-205	ENST00000597776	CXCL6	P80162	114 aa		4.74	□□□□□ -1.65
LSM4-205	ENST00000597776		Q5VV11	94 aa		4.74	□□□□□ -1.65
LSM4-205	ENST00000597776		S4R3F8	94 aa		4.74	□□□□□ -1.65
LSM4-205	ENST00000597776	MUC12	Q9UKN1	5478 aa		4.74	□□□□□ -1.65
LSM4-205	ENST00000597776	SMCP	P49901	116 aa	Predicted RBP	4.72	□□□□□ -1.65
LSM4-205	ENST00000597776	KRTAP19-8	Q3LI54	63 aa		4.72	□□□□□ -1.65
LSM4-205	ENST00000597776	SPRR2G	Q9BYE4	73 aa		4.72	□□□□□ -1.65
LSM4-205	ENST00000597776		K7EP34	96 aa		4.71	□□□□□ -1.66
LSM4-205	ENST00000597776	LCA10	Q71F78	164 aa		4.71	□□□□□ -1.66
LSM4-205	ENST00000597776	PRO0461	Q9UI25	63 aa		4.71	□□□□□ -1.66
LSM4-205	ENST00000597776	CSAG1	Q6PB30	78 aa		4.7	□□□□□ -1.66
LSM4-205	ENST00000597776	C1orf64	Q8NEQ6	169 aa		4.7	□□□□□ -1.66
LSM4-205	ENST00000597776	KRTAP10-5	P60370	271 aa		4.69	□□□□□ -1.66
LSM4-205	ENST00000597776	UBL5	Q9BZL1	73 aa		4.68	□□□□□ -1.66
LSM4-205	ENST00000597776	KLKP1	Q107X0	134 aa		4.65	□□□□□ -1.67
LSM4-205	ENST00000597776	GTF2H5	Q6ZYL4	71 aa		4.65	□□□□□ -1.67
LSM4-205	ENST00000597776	KRTAP20-1	Q3LI63	56 aa		4.64	□□□□□ -1.67
LSM4-205	ENST00000597776	KRTAP3-3	Q9BYR6	98 aa		4.63	□□□□□ -1.67
LSM4-205	ENST00000597776		F8W1H4	67 aa		4.62	□□□□□ -1.67
LSM4-205	ENST00000597776	KRTAP5-9	P26371	169 aa		4.61	□□□□□ -1.67
LSM4-205	ENST00000597776	KMT2D	O14686	5537 aa		4.6	□□□□□ -1.67
LSM4-205	ENST00000597776	MDN1	Q9NU22	5596 aa		4.6	□□□□□ -1.67
LSM4-205	ENST00000597776		A0A087WVE0	104 aa		4.59	□□□□□ -1.67
LSM4-205	ENST00000597776	PCP4L1	A6NKN8	68 aa		4.59	□□□□□ -1.67

Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms