RNA–Protein interactions for RNA: ENST00000593946.5

PNKP-203, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 1 (best)

Gene PNKP, Length 1,723 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-203ENST00000593946 TNXBP22105 4242 aa11.88□□□□□ -0.51
PNKP-203ENST00000593946 A8MWP4 228 aa11.87□□□□□ -0.51
PNKP-203ENST00000593946 C1orf195Q5TG92 126 aa11.86□□□□□ -0.51
PNKP-203ENST00000593946 COX7CP15954 63 aa11.83□□□□□ -0.52
PNKP-203ENST00000593946 PRR15Q8IV56 129 aa11.83□□□□□ -0.52
PNKP-203ENST00000593946 MT1HL1P0DM35 61 aa11.82□□□□□ -0.52
PNKP-203ENST00000593946 HERC2O95714 4834 aa11.81□□□□□ -0.52
PNKP-203ENST00000593946 NDUFB1O75438 58 aa11.8□□□□□ -0.52
PNKP-203ENST00000593946 OXTP01178 125 aa11.8□□□□□ -0.52
PNKP-203ENST00000593946 DMBT1Q9UGM3 2413 aaPredicted RBP11.76□□□□□ -0.53
PNKP-203ENST00000593946 A0A1B0GVX0 72 aa11.76□□□□□ -0.53
PNKP-203ENST00000593946 SMIM20Q8N5G0 67 aa11.76□□□□□ -0.53
PNKP-203ENST00000593946 SERP2Q8N6R1 65 aa11.73□□□□□ -0.53
PNKP-203ENST00000593946 IGHV6-1A0A0B4J1U7 121 aa11.72□□□□□ -0.53
PNKP-203ENST00000593946 HCG22E2RYF7 251 aa11.72□□□□□ -0.53
PNKP-203ENST00000593946 KRTAP29-1A8MX34 341 aaPredicted RBP11.71□□□□□ -0.54
PNKP-203ENST00000593946 MMP24-AS1A0A0U1RRL7 71 aa11.69□□□□□ -0.54
PNKP-203ENST00000593946 ABCA13Q86UQ4 5058 aa11.69□□□□□ -0.54
PNKP-203ENST00000593946 C8orf17Q9NRJ1 99 aa11.68□□□□□ -0.54
PNKP-203ENST00000593946 WFDC13Q8IUB5 93 aa11.66□□□□□ -0.54
PNKP-203ENST00000593946 TMEM258P61165 79 aa11.66□□□□□ -0.54
PNKP-203ENST00000593946 RPS28P62857 69 aaKnown RBP11.66□□□□□ -0.54
PNKP-203ENST00000593946 NOTCH2NLQ7Z3S9 236 aa11.66□□□□□ -0.54
PNKP-203ENST00000593946 RETNLBQ9BQ08 111 aa11.65□□□□□ -0.54
PNKP-203ENST00000593946 CASC2Q6XLA1 102 aa11.64□□□□□ -0.55
PNKP-203ENST00000593946 C8orf87E5RJ46 101 aa11.63□□□□□ -0.55
PNKP-203ENST00000593946 hDV103S1A0JD37 113 aa11.62□□□□□ -0.55
PNKP-203ENST00000593946 LINC00313P59037 77 aa11.58□□□□□ -0.56
PNKP-203ENST00000593946 TMEM254Q8TBM7 123 aa11.55□□□□□ -0.56
PNKP-203ENST00000593946 OCR1Q9BZK8 76 aa11.54□□□□□ -0.56
PNKP-203ENST00000593946 FP248Q71RG6 208 aaPredicted RBP11.53□□□□□ -0.56
PNKP-203ENST00000593946 MRPL34Q9BQ48 92 aaKnown RBP11.53□□□□□ -0.56
PNKP-203ENST00000593946 KRTAP16-1A8MUX0 517 aa11.51□□□□□ -0.57
PNKP-203ENST00000593946 TRAV7A0A075B6U4 112 aa11.5□□□□□ -0.57
PNKP-203ENST00000593946 J3QL48 77 aa11.49□□□□□ -0.57
PNKP-203ENST00000593946 C9orf92A6NGG3 77 aa11.43□□□□□ -0.58
PNKP-203ENST00000593946 Q8N9P0 234 aaPredicted RBP11.43□□□□□ -0.58
PNKP-203ENST00000593946 IGLV7-46A0A075B6I9 117 aa11.43□□□□□ -0.58
PNKP-203ENST00000593946 NDUFS5O43920 106 aa11.41□□□□□ -0.58
PNKP-203ENST00000593946 TP53AIP1Q9HCN2 124 aa11.4□□□□□ -0.58
PNKP-203ENST00000593946 CYSTM1Q9H1C7 97 aa11.39□□□□□ -0.59
PNKP-203ENST00000593946 PRR4Q16378 134 aa11.37□□□□□ -0.59
PNKP-203ENST00000593946 NDUFC1O43677 76 aa11.36□□□□□ -0.59
PNKP-203ENST00000593946 PCLOQ9Y6V0 5065 aa11.35□□□□□ -0.59
PNKP-203ENST00000593946 KLKP1Q107X0 134 aa11.35□□□□□ -0.59
PNKP-203ENST00000593946 KRTAP13-3Q3SY46 172 aa11.35□□□□□ -0.59
PNKP-203ENST00000593946 C20orf197Q8N268 126 aa11.35□□□□□ -0.59
PNKP-203ENST00000593946 FAM236DA0A1B0GTK5 79 aa11.35□□□□□ -0.59
PNKP-203ENST00000593946 FAM236CP0DP71 79 aa11.35□□□□□ -0.59
PNKP-203ENST00000593946 C5orf47Q569G3 176 aa11.35□□□□□ -0.59
PNKP-203ENST00000593946 ATP5EP56381 51 aaPredicted RBP11.32□□□□□ -0.6
PNKP-203ENST00000593946 C20orf166-AS1Q96NR2 134 aa11.32□□□□□ -0.6
PNKP-203ENST00000593946 TRAV22A0A0B4J277 110 aa11.3□□□□□ -0.6
PNKP-203ENST00000593946 A8MUU9 505 aa11.3□□□□□ -0.6
PNKP-203ENST00000593946 SERP1Q9Y6X1 66 aa11.29□□□□□ -0.6
PNKP-203ENST00000593946 H0Y9P7 68 aa11.27□□□□□ -0.61
PNKP-203ENST00000593946 H7BZZ5 65 aa11.27□□□□□ -0.61
PNKP-203ENST00000593946 TPRXLQ17RH7 258 aa11.27□□□□□ -0.61
PNKP-203ENST00000593946 Q5W150 140 aa11.27□□□□□ -0.61
PNKP-203ENST00000593946 MP68P56378 58 aa11.24□□□□□ -0.61
PNKP-203ENST00000593946 A0A0U1RQV1 116 aa11.23□□□□□ -0.61
PNKP-203ENST00000593946 Q75L30 129 aa11.23□□□□□ -0.61
PNKP-203ENST00000593946 XP32Q5T750 250 aa11.23□□□□□ -0.61
PNKP-203ENST00000593946 SNURFQ9Y675 71 aa11.21□□□□□ -0.61
PNKP-203ENST00000593946 H3BPC8 53 aa11.21□□□□□ -0.62
PNKP-203ENST00000593946 LINC00208Q96KT6 92 aa11.19□□□□□ -0.62
PNKP-203ENST00000593946 ZCCHC13Q8WW36 166 aaKnown RBP11.18□□□□□ -0.62
PNKP-203ENST00000593946 C1orf64Q8NEQ6 169 aa11.16□□□□□ -0.62
PNKP-203ENST00000593946 RPL37P61927 97 aaKnown RBP11.15□□□□□ -0.63
PNKP-203ENST00000593946 SMIM26A0A096LP01 95 aa11.12□□□□□ -0.63
PNKP-203ENST00000593946 LPAP08519 4548 aa11.09□□□□□ -0.63
PNKP-203ENST00000593946 LOC101927531A0A1B0GV80 90 aa11.09□□□□□ -0.63
PNKP-203ENST00000593946 HERC1Q15751 4861 aa11.07□□□□□ -0.64
PNKP-203ENST00000593946 IGKV2-30P06310 120 aa11.06□□□□□ -0.64
PNKP-203ENST00000593946 ATP11AUNQ6ZP68 121 aa11.06□□□□□ -0.64
PNKP-203ENST00000593946 C4orf26Q17RF5 130 aa11.04□□□□□ -0.64
PNKP-203ENST00000593946 LRP2P98164 4655 aa11.04□□□□□ -0.64
PNKP-203ENST00000593946 CYP4F30PQ9H0H9 118 aa11.04□□□□□ -0.64
PNKP-203ENST00000593946 IGKV2D-30A0A075B6S6 120 aa11□□□□□ -0.65
PNKP-203ENST00000593946 C7orf65Q6ZTY9 151 aa10.97□□□□□ -0.65
PNKP-203ENST00000593946 PCOTHQ58A44 107 aa10.96□□□□□ -0.65
PNKP-203ENST00000593946 SPINK7P58062 85 aa10.91□□□□□ -0.66
PNKP-203ENST00000593946 HMCN2Q8NDA2 5059 aa10.89□□□□□ -0.67
PNKP-203ENST00000593946 PRO0628Q9UI54 55 aa10.88□□□□□ -0.67
PNKP-203ENST00000593946 SPANXA2-OT1Q8N9U9 137 aa10.87□□□□□ -0.67
PNKP-203ENST00000593946 HRES1P13985 223 aa10.85□□□□□ -0.67
PNKP-203ENST00000593946 SEC61BP60468 96 aaKnown RBP10.85□□□□□ -0.67
PNKP-203ENST00000593946 Q1T7F1 81 aa10.68□□□□□ -0.7
PNKP-203ENST00000593946 DMAC1Q96GE9 116 aa10.68□□□□□ -0.7
PNKP-203ENST00000593946 MUC17Q685J3 4493 aa10.68□□□□□ -0.7
PNKP-203ENST00000593946 V9GYY9 64 aa10.67□□□□□ -0.7
PNKP-203ENST00000593946 MPLKIPQ8TAP9 179 aa10.67□□□□□ -0.7
PNKP-203ENST00000593946 KRTAP4-1Q9BYQ7 146 aa10.65□□□□□ -0.7
PNKP-203ENST00000593946 BRK1Q8WUW1 75 aa10.62□□□□□ -0.71
PNKP-203ENST00000593946 COX6B2Q6YFQ2 88 aa10.61□□□□□ -0.71
PNKP-203ENST00000593946 KRTAP3-1Q9BYR8 98 aa10.6□□□□□ -0.71
PNKP-203ENST00000593946 A8MUN3 132 aa10.59□□□□□ -0.71
PNKP-203ENST00000593946 ACYP2P14621 99 aa10.58□□□□□ -0.72
PNKP-203ENST00000593946 COA5Q86WW8 74 aa10.53□□□□□ -0.72
PNKP-203ENST00000593946 RBM12B-AS1Q9P1G2 102 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms