RNA–Protein interactions for RNA: ENST00000593829.5

LSM4-203, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM4, Length 1,908 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-203ENST00000593829 TNXBP22105 4242 aa11.67□□□□□ -0.54
LSM4-203ENST00000593829 DEFB105AQ8NG35 78 aa11.66□□□□□ -0.54
LSM4-203ENST00000593829 Q9BRP9 147 aa11.65□□□□□ -0.54
LSM4-203ENST00000593829 ANAPC11Q9NYG5 84 aa11.63□□□□□ -0.55
LSM4-203ENST00000593829 SMIM29Q86T20 159 aa11.62□□□□□ -0.55
LSM4-203ENST00000593829 FAM229BQ4G0N7 80 aa11.62□□□□□ -0.55
LSM4-203ENST00000593829 ZNF706Q9Y5V0 76 aaPredicted RBP11.62□□□□□ -0.55
LSM4-203ENST00000593829 A0A087X002 238 aa11.61□□□□□ -0.55
LSM4-203ENST00000593829 ZCCHC13Q8WW36 166 aaKnown RBP11.6□□□□□ -0.55
LSM4-203ENST00000593829 DSCR10P59022 87 aa11.58□□□□□ -0.56
LSM4-203ENST00000593829 ST20-AS1Q8NBB2 130 aa11.55□□□□□ -0.56
LSM4-203ENST00000593829 TYMSOSQ8TAI1 123 aa11.55□□□□□ -0.56
LSM4-203ENST00000593829 KRTAP13-2Q52LG2 175 aa11.54□□□□□ -0.56
LSM4-203ENST00000593829 hDV103S1A0JD37 113 aa11.53□□□□□ -0.56
LSM4-203ENST00000593829 LINC00483Q53H64 154 aa11.5□□□□□ -0.57
LSM4-203ENST00000593829 K7EQZ3 153 aa11.5□□□□□ -0.57
LSM4-203ENST00000593829 HCG22E2RYF7 251 aa11.48□□□□□ -0.57
LSM4-203ENST00000593829 CYP4F30PQ9H0H9 118 aa11.48□□□□□ -0.57
LSM4-203ENST00000593829 IGLV8-61A0A075B6I0 122 aa11.48□□□□□ -0.57
LSM4-203ENST00000593829 MPLKIPQ8TAP9 179 aa11.47□□□□□ -0.57
LSM4-203ENST00000593829 Q1T7F1 81 aa11.45□□□□□ -0.58
LSM4-203ENST00000593829 NDUFB1O75438 58 aa11.43□□□□□ -0.58
LSM4-203ENST00000593829 BRK1Q8WUW1 75 aa11.43□□□□□ -0.58
LSM4-203ENST00000593829 IGFL1Q6UW32 110 aa11.42□□□□□ -0.58
LSM4-203ENST00000593829 LINC00304Q8N9R0 145 aa11.42□□□□□ -0.58
LSM4-203ENST00000593829 C1orf64Q8NEQ6 169 aa11.42□□□□□ -0.58
LSM4-203ENST00000593829 IGLV9-49A0A0B4J1Y8 123 aa11.39□□□□□ -0.59
LSM4-203ENST00000593829 SPRR1BP22528 89 aa11.39□□□□□ -0.59
LSM4-203ENST00000593829 HMCN2Q8NDA2 5059 aa11.39□□□□□ -0.59
LSM4-203ENST00000593829 MOBPQ13875 183 aa11.36□□□□□ -0.59
LSM4-203ENST00000593829 H3BPC8 53 aa11.35□□□□□ -0.59
LSM4-203ENST00000593829 SSBP3-AS1Q7Z2R9 100 aa11.35□□□□□ -0.59
LSM4-203ENST00000593829 MP68P56378 58 aa11.34□□□□□ -0.59
LSM4-203ENST00000593829 SPAG11AQ6PDA7 123 aa11.34□□□□□ -0.59
LSM4-203ENST00000593829 C4orf48Q5BLP8 95 aa11.33□□□□□ -0.6
LSM4-203ENST00000593829 TRAV22A0A0B4J277 110 aa11.31□□□□□ -0.6
LSM4-203ENST00000593829 A0A087WSZ3 146 aa11.31□□□□□ -0.6
LSM4-203ENST00000593829 SPANXA2-OT1Q8N9U9 137 aa11.31□□□□□ -0.6
LSM4-203ENST00000593829 V9GYY9 64 aa11.29□□□□□ -0.6
LSM4-203ENST00000593829 PRR15Q8IV56 129 aa11.28□□□□□ -0.6
LSM4-203ENST00000593829 C1orf195Q5TG92 126 aa11.27□□□□□ -0.6
LSM4-203ENST00000593829 WFDC13Q8IUB5 93 aa11.27□□□□□ -0.61
LSM4-203ENST00000593829 SPINK1P00995 79 aa11.26□□□□□ -0.61
LSM4-203ENST00000593829 A0A0G2JQZ4 141 aa11.25□□□□□ -0.61
LSM4-203ENST00000593829 PRR4Q16378 134 aa11.25□□□□□ -0.61
LSM4-203ENST00000593829 A8MWP4 228 aa11.23□□□□□ -0.61
LSM4-203ENST00000593829 DEFB116Q30KQ4 102 aa11.23□□□□□ -0.61
LSM4-203ENST00000593829 CASC2Q6XLA1 102 aa11.23□□□□□ -0.61
LSM4-203ENST00000593829 LINC00472Q9H8W2 130 aa11.23□□□□□ -0.61
LSM4-203ENST00000593829 LINC00208Q96KT6 92 aa11.22□□□□□ -0.61
LSM4-203ENST00000593829 H0Y9P7 68 aa11.2□□□□□ -0.62
LSM4-203ENST00000593829 RETNLBQ9BQ08 111 aa11.2□□□□□ -0.62
LSM4-203ENST00000593829 RPS29P62273 56 aaKnown RBP11.19□□□□□ -0.62
LSM4-203ENST00000593829 PSPHP1O15172 72 aa11.13□□□□□ -0.63
LSM4-203ENST00000593829 CD164Q04900 197 aa11.13□□□□□ -0.63
LSM4-203ENST00000593829 LRP2P98164 4655 aa11.11□□□□□ -0.63
LSM4-203ENST00000593829 LIMD2Q9BT23 127 aa11.11□□□□□ -0.63
LSM4-203ENST00000593829 MMP24-AS1A0A0U1RRL7 71 aa11.1□□□□□ -0.63
LSM4-203ENST00000593829 IGLV7-46A0A075B6I9 117 aa11.09□□□□□ -0.63
LSM4-203ENST00000593829 A8MUN3 132 aa11.08□□□□□ -0.64
LSM4-203ENST00000593829 ASB16-AS1Q495Z4 193 aa11.08□□□□□ -0.64
LSM4-203ENST00000593829 Q5VV11 94 aa11.08□□□□□ -0.64
LSM4-203ENST00000593829 Q8N9P0 234 aaPredicted RBP11.08□□□□□ -0.64
LSM4-203ENST00000593829 LPAP08519 4548 aa11.08□□□□□ -0.64
LSM4-203ENST00000593829 TP53AIP1Q9HCN2 124 aa11.05□□□□□ -0.64
LSM4-203ENST00000593829 UBR4Q5T4S7 5183 aa11.04□□□□□ -0.64
LSM4-203ENST00000593829 TPRXLQ17RH7 258 aa11.01□□□□□ -0.65
LSM4-203ENST00000593829 PMAIP1Q13794 54 aa11.01□□□□□ -0.65
LSM4-203ENST00000593829 Q96NJ1 140 aa10.99□□□□□ -0.65
LSM4-203ENST00000593829 LOC101927531A0A1B0GV80 90 aa10.99□□□□□ -0.65
LSM4-203ENST00000593829 COA5Q86WW8 74 aa10.97□□□□□ -0.65
LSM4-203ENST00000593829 Q75L30 129 aa10.96□□□□□ -0.65
LSM4-203ENST00000593829 C8orf17Q9NRJ1 99 aa10.94□□□□□ -0.66
LSM4-203ENST00000593829 CHKB-CPT1BH3BT56 60 aa10.93□□□□□ -0.66
LSM4-203ENST00000593829 PRR15LQ9BU68 103 aa10.93□□□□□ -0.66
LSM4-203ENST00000593829 KRTAP13-3Q3SY46 172 aa10.92□□□□□ -0.66
LSM4-203ENST00000593829 SEC61GP60059 68 aa10.91□□□□□ -0.66
LSM4-203ENST00000593829 A0A1B0GVX0 72 aa10.88□□□□□ -0.67
LSM4-203ENST00000593829 LINC01558Q9Y6Z2 57 aa10.86□□□□□ -0.67
LSM4-203ENST00000593829 ATP11AUNQ6ZP68 121 aa10.84□□□□□ -0.67
LSM4-203ENST00000593829 MRPL34Q9BQ48 92 aaKnown RBP10.84□□□□□ -0.67
LSM4-203ENST00000593829 PCOTHQ58A44 107 aa10.83□□□□□ -0.68
LSM4-203ENST00000593829 A8MU10 97 aa10.82□□□□□ -0.68
LSM4-203ENST00000593829 LCA10Q71F78 164 aa10.8□□□□□ -0.68
LSM4-203ENST00000593829 CDC42SE1Q9NRR8 79 aa10.78□□□□□ -0.68
LSM4-203ENST00000593829 RNF213Q63HN8 5207 aa10.78□□□□□ -0.68
LSM4-203ENST00000593829 IGHV6-1A0A0B4J1U7 121 aa10.77□□□□□ -0.69
LSM4-203ENST00000593829 A6NED7 52 aa10.77□□□□□ -0.69
LSM4-203ENST00000593829 C9orf92A6NGG3 77 aa10.76□□□□□ -0.69
LSM4-203ENST00000593829 HRES1P13985 223 aa10.75□□□□□ -0.69
LSM4-203ENST00000593829 XP32Q5T750 250 aa10.74□□□□□ -0.69
LSM4-203ENST00000593829 NDUFS5O43920 106 aa10.74□□□□□ -0.69
LSM4-203ENST00000593829 KTN1-AS1Q86SY8 53 aa10.73□□□□□ -0.69
LSM4-203ENST00000593829 A6NN06 94 aa10.69□□□□□ -0.7
LSM4-203ENST00000593829 SEC61BP60468 96 aaKnown RBP10.68□□□□□ -0.7
LSM4-203ENST00000593829 NOTCH2NLQ7Z3S9 236 aa10.66□□□□□ -0.7
LSM4-203ENST00000593829 SPTSSBQ8NFR3 76 aa10.66□□□□□ -0.7
LSM4-203ENST00000593829 MUC17Q685J3 4493 aa10.66□□□□□ -0.7
LSM4-203ENST00000593829 C8orf87E5RJ46 101 aa10.62□□□□□ -0.71
LSM4-203ENST00000593829 MUC2Q02817 5179 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms