RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	LRP1B	Q9NZR2	4599 aa		9.38	□□□□□ -0.91
DDX39A-209	ENST00000589318	PRR15L	Q9BU68	103 aa		9.38	□□□□□ -0.91
DDX39A-209	ENST00000589318		A0A1B0GVY2	172 aa		9.36	□□□□□ -0.91
DDX39A-209	ENST00000589318	SPRR1B	P22528	89 aa		9.35	□□□□□ -0.91
DDX39A-209	ENST00000589318	CDC42SE1	Q9NRR8	79 aa		9.35	□□□□□ -0.91
DDX39A-209	ENST00000589318		A6NN06	94 aa		9.34	□□□□□ -0.91
DDX39A-209	ENST00000589318		H0Y9P7	68 aa		9.33	□□□□□ -0.92
DDX39A-209	ENST00000589318	DYNC1H1	Q14204	4646 aa	Known RBP	9.33	□□□□□ -0.92
DDX39A-209	ENST00000589318	KRTAP29-1	A8MX34	341 aa	Predicted RBP	9.33	□□□□□ -0.92
DDX39A-209	ENST00000589318		A6NED7	52 aa		9.32	□□□□□ -0.92
DDX39A-209	ENST00000589318	ZNF861P	O60384	105 aa		9.31	□□□□□ -0.92
DDX39A-209	ENST00000589318	SPTSSB	Q8NFR3	76 aa		9.31	□□□□□ -0.92
DDX39A-209	ENST00000589318	C7orf65	Q6ZTY9	151 aa		9.3	□□□□□ -0.92
DDX39A-209	ENST00000589318	LCA10	Q71F78	164 aa		9.3	□□□□□ -0.92
DDX39A-209	ENST00000589318	IGLV7-43	P04211	117 aa		9.29	□□□□□ -0.92
DDX39A-209	ENST00000589318	IGLV8-61	A0A075B6I0	122 aa		9.29	□□□□□ -0.92
DDX39A-209	ENST00000589318		A8MU10	97 aa		9.29	□□□□□ -0.92
DDX39A-209	ENST00000589318	WFDC13	Q8IUB5	93 aa		9.29	□□□□□ -0.92
DDX39A-209	ENST00000589318	IGLV7-46	A0A075B6I9	117 aa		9.28	□□□□□ -0.92
DDX39A-209	ENST00000589318	CASC2	Q6XLA1	102 aa		9.27	□□□□□ -0.93
DDX39A-209	ENST00000589318	LINC00483	Q53H64	154 aa		9.26	□□□□□ -0.93
DDX39A-209	ENST00000589318	COA5	Q86WW8	74 aa		9.26	□□□□□ -0.93
DDX39A-209	ENST00000589318	LINC01558	Q9Y6Z2	57 aa		9.26	□□□□□ -0.93
DDX39A-209	ENST00000589318	VPS13B	Q7Z7G8	4022 aa		9.26	□□□□□ -0.93
DDX39A-209	ENST00000589318	RYR3	Q15413	4870 aa		9.25	□□□□□ -0.93
DDX39A-209	ENST00000589318		A0A0G2JQZ4	141 aa		9.25	□□□□□ -0.93
DDX39A-209	ENST00000589318	IGFL1	Q6UW32	110 aa		9.25	□□□□□ -0.93
DDX39A-209	ENST00000589318	APOB	P04114	4563 aa	Known RBP	9.23	□□□□□ -0.93
DDX39A-209	ENST00000589318	ZNF706	Q9Y5V0	76 aa	Predicted RBP	9.22	□□□□□ -0.93
DDX39A-209	ENST00000589318		A8MWP4	228 aa		9.21	□□□□□ -0.94
DDX39A-209	ENST00000589318		A0A087WSZ3	146 aa		9.19	□□□□□ -0.94
DDX39A-209	ENST00000589318	ANAPC11	Q9NYG5	84 aa		9.19	□□□□□ -0.94
DDX39A-209	ENST00000589318	DEFB116	Q30KQ4	102 aa		9.17	□□□□□ -0.94
DDX39A-209	ENST00000589318	TP53AIP1	Q9HCN2	124 aa		9.17	□□□□□ -0.94
DDX39A-209	ENST00000589318	MOBP	Q13875	183 aa		9.16	□□□□□ -0.94
DDX39A-209	ENST00000589318	IGLV9-49	A0A0B4J1Y8	123 aa		9.15	□□□□□ -0.94
DDX39A-209	ENST00000589318	LINC00472	Q9H8W2	130 aa		9.12	□□□□□ -0.95
DDX39A-209	ENST00000589318	RPL37A	P61513	92 aa	Known RBP	9.11	□□□□□ -0.95
DDX39A-209	ENST00000589318	FAT1	Q14517	4588 aa		9.11	□□□□□ -0.95
DDX39A-209	ENST00000589318	ASB16-AS1	Q495Z4	193 aa		9.1	□□□□□ -0.95
DDX39A-209	ENST00000589318	SMR3B	P02814	79 aa	Predicted RBP	9.09	□□□□□ -0.95
DDX39A-209	ENST00000589318		A0A087X002	238 aa		9.09	□□□□□ -0.95
DDX39A-209	ENST00000589318	KRTAP1-4	P0C5Y4	121 aa		9.07	□□□□□ -0.96
DDX39A-209	ENST00000589318	MMP24-AS1	A0A0U1RRL7	71 aa		9.07	□□□□□ -0.96
DDX39A-209	ENST00000589318	KRTAP10-4	P60372	401 aa	Predicted RBP	9.06	□□□□□ -0.96
DDX39A-209	ENST00000589318	SPAG11A	Q6PDA7	123 aa		9.06	□□□□□ -0.96
DDX39A-209	ENST00000589318	KRTAP13-2	Q52LG2	175 aa		9.03	□□□□□ -0.96
DDX39A-209	ENST00000589318	C8orf87	E5RJ46	101 aa		9.03	□□□□□ -0.96
DDX39A-209	ENST00000589318	C4orf48	Q5BLP8	95 aa		9.03	□□□□□ -0.96
DDX39A-209	ENST00000589318	SPINK6	Q6UWN8	80 aa		9.01	□□□□□ -0.97
DDX39A-209	ENST00000589318	SPINK7	P58062	85 aa		9	□□□□□ -0.97
DDX39A-209	ENST00000589318	HSPG2	P98160	4391 aa		9	□□□□□ -0.97
DDX39A-209	ENST00000589318	SSBP3-AS1	Q7Z2R9	100 aa		8.99	□□□□□ -0.97
DDX39A-209	ENST00000589318	PCOTH	Q58A44	107 aa		8.99	□□□□□ -0.97
DDX39A-209	ENST00000589318	HRES1	P13985	223 aa		8.98	□□□□□ -0.97
DDX39A-209	ENST00000589318	PLA2G1B	P04054	148 aa	Known RBP	8.96	□□□□□ -0.97
DDX39A-209	ENST00000589318	LINC00313	P59037	77 aa		8.95	□□□□□ -0.98
DDX39A-209	ENST00000589318		Q96NJ1	140 aa		8.95	□□□□□ -0.98
DDX39A-209	ENST00000589318	PKHD1L1	Q86WI1	4243 aa		8.94	□□□□□ -0.98
DDX39A-209	ENST00000589318	RYR1	P21817	5038 aa		8.94	□□□□□ -0.98
DDX39A-209	ENST00000589318	CDK2AP2	O75956	126 aa		8.93	□□□□□ -0.98
DDX39A-209	ENST00000589318	EPPK1	P58107	5090 aa	Known RBP	8.92	□□□□□ -0.98
DDX39A-209	ENST00000589318	C8orf17	Q9NRJ1	99 aa		8.92	□□□□□ -0.98
DDX39A-209	ENST00000589318	LINC01554	Q52M75	96 aa		8.89	□□□□□ -0.99
DDX39A-209	ENST00000589318	PRR26	Q8N8Z3	221 aa		8.88	□□□□□ -0.99
DDX39A-209	ENST00000589318	KIAA1109	Q2LD37	5005 aa		8.88	□□□□□ -0.99
DDX39A-209	ENST00000589318	TYMSOS	Q8TAI1	123 aa		8.87	□□□□□ -0.99
DDX39A-209	ENST00000589318	KRTAP17-1	Q9BYP8	105 aa		8.87	□□□□□ -0.99
DDX39A-209	ENST00000589318	ACYP2	P14621	99 aa		8.86	□□□□□ -0.99
DDX39A-209	ENST00000589318	MRPL34	Q9BQ48	92 aa	Known RBP	8.86	□□□□□ -0.99
DDX39A-209	ENST00000589318		A0A1B0GVX0	72 aa		8.85	□□□□□ -0.99
DDX39A-209	ENST00000589318	FAM229A	H3BQW9	127 aa		8.85	□□□□□ -0.99
DDX39A-209	ENST00000589318		Q5VSD8	79 aa		8.84	□□□□□ -1
DDX39A-209	ENST00000589318	SPATA8	Q6RVD6	105 aa		8.82	□□□□□ -1
DDX39A-209	ENST00000589318	PRAC1	Q96KF2	57 aa		8.78	□□□□□ -1
DDX39A-209	ENST00000589318	SPINK1	P00995	79 aa		8.76	□□□□□ -1.01
DDX39A-209	ENST00000589318	LINC00304	Q8N9R0	145 aa		8.76	□□□□□ -1.01
DDX39A-209	ENST00000589318	LRP1	Q07954	4544 aa	Known RBP	8.76	□□□□□ -1.01
DDX39A-209	ENST00000589318	IGHV6-1	A0A0B4J1U7	121 aa		8.75	□□□□□ -1.01
DDX39A-209	ENST00000589318		A0A1B0GU69	56 aa		8.75	□□□□□ -1.01
DDX39A-209	ENST00000589318	DMAC1	Q96GE9	116 aa		8.74	□□□□□ -1.01
DDX39A-209	ENST00000589318	TNXB	P22105	4242 aa		8.73	□□□□□ -1.01
DDX39A-209	ENST00000589318	RETNLB	Q9BQ08	111 aa		8.73	□□□□□ -1.01
DDX39A-209	ENST00000589318	RPS29	P62273	56 aa	Known RBP	8.72	□□□□□ -1.01
DDX39A-209	ENST00000589318		Q8N1X5	172 aa		8.72	□□□□□ -1.01
DDX39A-209	ENST00000589318	UQCR11	O14957	56 aa		8.71	□□□□□ -1.02
DDX39A-209	ENST00000589318	NOTCH2NL	Q7Z3S9	236 aa		8.71	□□□□□ -1.02
DDX39A-209	ENST00000589318	FAT3	Q8TDW7	4589 aa		8.71	□□□□□ -1.02
DDX39A-209	ENST00000589318		H3BS24	57 aa		8.7	□□□□□ -1.02
DDX39A-209	ENST00000589318	KRTAP13-3	Q3SY46	172 aa		8.7	□□□□□ -1.02
DDX39A-209	ENST00000589318	MIR22HG	Q0VDD5	57 aa		8.69	□□□□□ -1.02
DDX39A-209	ENST00000589318	ADM2	Q7Z4H4	148 aa		8.67	□□□□□ -1.02
DDX39A-209	ENST00000589318	KRTAP10-8	P60410	259 aa		8.66	□□□□□ -1.02
DDX39A-209	ENST00000589318	FLG2	Q5D862	2391 aa	Predicted RBP	8.64	□□□□□ -1.03
DDX39A-209	ENST00000589318	MYCBP2	O75592	4640 aa		8.62	□□□□□ -1.03
DDX39A-209	ENST00000589318		Q5W150	140 aa		8.6	□□□□□ -1.03
DDX39A-209	ENST00000589318	KRTAP4-5	Q9BYR2	181 aa		8.56	□□□□□ -1.04
DDX39A-209	ENST00000589318	MT1HL1	P0DM35	61 aa		8.56	□□□□□ -1.04
DDX39A-209	ENST00000589318	KRTAP16-1	A8MUX0	517 aa		8.55	□□□□□ -1.04
DDX39A-209	ENST00000589318	CSAG1	Q6PB30	78 aa		8.54	□□□□□ -1.04

Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms