RNA–Protein interactions for RNA: ENST00000574897.5

NPLOC4-217, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

TSL 2

Gene NPLOC4, Length 2,365 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-217ENST00000574897 PRR4Q16378 134 aa13.74□□□□□ -0.21
NPLOC4-217ENST00000574897 TRAV22A0A0B4J277 110 aa13.74□□□□□ -0.21
NPLOC4-217ENST00000574897 DYNC1H1Q14204 4646 aaKnown RBP13.73□□□□□ -0.21
NPLOC4-217ENST00000574897 Q5XG85 94 aa13.72□□□□□ -0.21
NPLOC4-217ENST00000574897 NDUFS5O43920 106 aa13.71□□□□□ -0.22
NPLOC4-217ENST00000574897 FAM229BQ4G0N7 80 aa13.69□□□□□ -0.22
NPLOC4-217ENST00000574897 C1orf64Q8NEQ6 169 aa13.69□□□□□ -0.22
NPLOC4-217ENST00000574897 MRPL34Q9BQ48 92 aaKnown RBP13.68□□□□□ -0.22
NPLOC4-217ENST00000574897 C4orf26Q17RF5 130 aa13.65□□□□□ -0.22
NPLOC4-217ENST00000574897 SMR3BP02814 79 aaPredicted RBP13.64□□□□□ -0.23
NPLOC4-217ENST00000574897 FP248Q71RG6 208 aaPredicted RBP13.64□□□□□ -0.23
NPLOC4-217ENST00000574897 H3BPC8 53 aa13.63□□□□□ -0.23
NPLOC4-217ENST00000574897 PLA2G1BP04054 148 aaKnown RBP13.63□□□□□ -0.23
NPLOC4-217ENST00000574897 LINC00336Q6ZUF6 198 aa13.62□□□□□ -0.23
NPLOC4-217ENST00000574897 TP53AIP1Q9HCN2 124 aa13.62□□□□□ -0.23
NPLOC4-217ENST00000574897 RYR2Q92736 4967 aa13.61□□□□□ -0.23
NPLOC4-217ENST00000574897 A0A1B0GVY2 172 aa13.61□□□□□ -0.23
NPLOC4-217ENST00000574897 C1orf195Q5TG92 126 aa13.6□□□□□ -0.23
NPLOC4-217ENST00000574897 KMT2CQ8NEZ4 4911 aaKnown RBP13.59□□□□□ -0.23
NPLOC4-217ENST00000574897 SMIM26A0A096LP01 95 aa13.59□□□□□ -0.23
NPLOC4-217ENST00000574897 APOBP04114 4563 aaKnown RBP13.55□□□□□ -0.24
NPLOC4-217ENST00000574897 FAT1Q14517 4588 aa13.55□□□□□ -0.24
NPLOC4-217ENST00000574897 CYP4F30PQ9H0H9 118 aa13.54□□□□□ -0.24
NPLOC4-217ENST00000574897 TYMSOSQ8TAI1 123 aa13.54□□□□□ -0.24
NPLOC4-217ENST00000574897 PCOTHQ58A44 107 aa13.53□□□□□ -0.24
NPLOC4-217ENST00000574897 Q5W150 140 aa13.51□□□□□ -0.25
NPLOC4-217ENST00000574897 PRR26Q8N8Z3 221 aa13.5□□□□□ -0.25
NPLOC4-217ENST00000574897 C8orf87E5RJ46 101 aa13.47□□□□□ -0.25
NPLOC4-217ENST00000574897 LINC00313P59037 77 aa13.47□□□□□ -0.25
NPLOC4-217ENST00000574897 MPLKIPQ8TAP9 179 aa13.47□□□□□ -0.25
NPLOC4-217ENST00000574897 SPANXA2-OT1Q8N9U9 137 aa13.46□□□□□ -0.25
NPLOC4-217ENST00000574897 LIMD2Q9BT23 127 aa13.45□□□□□ -0.26
NPLOC4-217ENST00000574897 C4orf48Q5BLP8 95 aa13.45□□□□□ -0.26
NPLOC4-217ENST00000574897 KRTAP13-3Q3SY46 172 aa13.43□□□□□ -0.26
NPLOC4-217ENST00000574897 KRTAP10-4P60372 401 aaPredicted RBP13.4□□□□□ -0.26
NPLOC4-217ENST00000574897 RETNLBQ9BQ08 111 aa13.38□□□□□ -0.27
NPLOC4-217ENST00000574897 SPINK1P00995 79 aa13.37□□□□□ -0.27
NPLOC4-217ENST00000574897 IGLV7-46A0A075B6I9 117 aa13.37□□□□□ -0.27
NPLOC4-217ENST00000574897 KRTAP16-1A8MUX0 517 aa13.36□□□□□ -0.27
NPLOC4-217ENST00000574897 LINC00304Q8N9R0 145 aa13.35□□□□□ -0.27
NPLOC4-217ENST00000574897 Q8N9P0 234 aaPredicted RBP13.34□□□□□ -0.27
NPLOC4-217ENST00000574897 LOC101927531A0A1B0GV80 90 aa13.29□□□□□ -0.28
NPLOC4-217ENST00000574897 PKHD1L1Q86WI1 4243 aa13.25□□□□□ -0.29
NPLOC4-217ENST00000574897 COA5Q86WW8 74 aa13.24□□□□□ -0.29
NPLOC4-217ENST00000574897 FAM229AH3BQW9 127 aa13.23□□□□□ -0.29
NPLOC4-217ENST00000574897 RYR3Q15413 4870 aa13.2□□□□□ -0.3
NPLOC4-217ENST00000574897 Q1T7F1 81 aa13.19□□□□□ -0.3
NPLOC4-217ENST00000574897 SPAG11AQ6PDA7 123 aa13.19□□□□□ -0.3
NPLOC4-217ENST00000574897 RPS29P62273 56 aaKnown RBP13.17□□□□□ -0.3
NPLOC4-217ENST00000574897 SVIPQ8NHG7 77 aa13.16□□□□□ -0.3
NPLOC4-217ENST00000574897 HRES1P13985 223 aa13.14□□□□□ -0.31
NPLOC4-217ENST00000574897 PSPHP1O15172 72 aa13.13□□□□□ -0.31
NPLOC4-217ENST00000574897 IGKV2-30P06310 120 aa13.13□□□□□ -0.31
NPLOC4-217ENST00000574897 HSPG2P98160 4391 aa13.08□□□□□ -0.32
NPLOC4-217ENST00000574897 LRP1Q07954 4544 aaKnown RBP13.08□□□□□ -0.32
NPLOC4-217ENST00000574897 IGKV2D-30A0A075B6S6 120 aa13.06□□□□□ -0.32
NPLOC4-217ENST00000574897 C9orf92A6NGG3 77 aa13.06□□□□□ -0.32
NPLOC4-217ENST00000574897 A8MUN3 132 aa13.04□□□□□ -0.32
NPLOC4-217ENST00000574897 FLG2Q5D862 2391 aaPredicted RBP13.04□□□□□ -0.32
NPLOC4-217ENST00000574897 BRK1Q8WUW1 75 aa12.99□□□□□ -0.33
NPLOC4-217ENST00000574897 Q5VSD8 79 aa12.98□□□□□ -0.33
NPLOC4-217ENST00000574897 KRTAP17-1Q9BYP8 105 aa12.97□□□□□ -0.33
NPLOC4-217ENST00000574897 V9GYY9 64 aa12.96□□□□□ -0.33
NPLOC4-217ENST00000574897 TNXBP22105 4242 aa12.95□□□□□ -0.34
NPLOC4-217ENST00000574897 Q8N1X5 172 aa12.94□□□□□ -0.34
NPLOC4-217ENST00000574897 DMAC1Q96GE9 116 aa12.94□□□□□ -0.34
NPLOC4-217ENST00000574897 RYR1P21817 5038 aa12.94□□□□□ -0.34
NPLOC4-217ENST00000574897 Q5VV11 94 aa12.93□□□□□ -0.34
NPLOC4-217ENST00000574897 PRR15LQ9BU68 103 aa12.92□□□□□ -0.34
NPLOC4-217ENST00000574897 ACYP2P14621 99 aa12.91□□□□□ -0.34
NPLOC4-217ENST00000574897 FAT3Q8TDW7 4589 aa12.87□□□□□ -0.35
NPLOC4-217ENST00000574897 PRO0628Q9UI54 55 aa12.87□□□□□ -0.35
NPLOC4-217ENST00000574897 KIAA1109Q2LD37 5005 aa12.87□□□□□ -0.35
NPLOC4-217ENST00000574897 C20orf166-AS1Q96NR2 134 aa12.85□□□□□ -0.35
NPLOC4-217ENST00000574897 A8MUU9 505 aa12.84□□□□□ -0.35
NPLOC4-217ENST00000574897 KRTAP10-8P60410 259 aa12.84□□□□□ -0.35
NPLOC4-217ENST00000574897 C7orf65Q6ZTY9 151 aa12.81□□□□□ -0.36
NPLOC4-217ENST00000574897 LINC01558Q9Y6Z2 57 aa12.8□□□□□ -0.36
NPLOC4-217ENST00000574897 DMBT1Q9UGM3 2413 aaPredicted RBP12.8□□□□□ -0.36
NPLOC4-217ENST00000574897 CHKB-CPT1BH3BT56 60 aa12.78□□□□□ -0.36
NPLOC4-217ENST00000574897 A8MU10 97 aa12.76□□□□□ -0.37
NPLOC4-217ENST00000574897 EPPK1P58107 5090 aaKnown RBP12.74□□□□□ -0.37
NPLOC4-217ENST00000574897 MYCBP2O75592 4640 aa12.73□□□□□ -0.37
NPLOC4-217ENST00000574897 Q75L30 129 aa12.71□□□□□ -0.37
NPLOC4-217ENST00000574897 A6NED7 52 aa12.61□□□□□ -0.39
NPLOC4-217ENST00000574897 SPINK7P58062 85 aa12.61□□□□□ -0.39
NPLOC4-217ENST00000574897 MT1HL1P0DM35 61 aa12.58□□□□□ -0.4
NPLOC4-217ENST00000574897 LCA10Q71F78 164 aa12.56□□□□□ -0.4
NPLOC4-217ENST00000574897 KRTAP3-1Q9BYR8 98 aa12.53□□□□□ -0.4
NPLOC4-217ENST00000574897 A0A1B0GU69 56 aa12.46□□□□□ -0.41
NPLOC4-217ENST00000574897 XP32Q5T750 250 aa12.45□□□□□ -0.42
NPLOC4-217ENST00000574897 ATP11AUNQ6ZP68 121 aa12.43□□□□□ -0.42
NPLOC4-217ENST00000574897 RPL37P61927 97 aaKnown RBP12.41□□□□□ -0.42
NPLOC4-217ENST00000574897 CDC42SE1Q9NRR8 79 aa12.4□□□□□ -0.42
NPLOC4-217ENST00000574897 KRTAP4-5Q9BYR2 181 aa12.4□□□□□ -0.43
NPLOC4-217ENST00000574897 SPTSSBQ8NFR3 76 aa12.36□□□□□ -0.43
NPLOC4-217ENST00000574897 COX6B2Q6YFQ2 88 aa12.32□□□□□ -0.44
NPLOC4-217ENST00000574897 ABCA13Q86UQ4 5058 aa12.25□□□□□ -0.45
NPLOC4-217ENST00000574897 PMAIP1Q13794 54 aa12.23□□□□□ -0.45
NPLOC4-217ENST00000574897 LRP2P98164 4655 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms