RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 SIGMAR1Q99720 223 aa11.26□□□□□ -0.61
VPS53-210ENST00000571456 C9orf92A6NGG3 77 aa11.25□□□□□ -0.61
VPS53-210ENST00000571456 SEC61BP60468 96 aaKnown RBP11.24□□□□□ -0.61
VPS53-210ENST00000571456 NREPQ16612 68 aa11.22□□□□□ -0.61
VPS53-210ENST00000571456 ETDBQ3ZM63 59 aa11.19□□□□□ -0.62
VPS53-210ENST00000571456 NDUFB1O75438 58 aa11.17□□□□□ -0.62
VPS53-210ENST00000571456 DEFB116Q30KQ4 102 aa11.16□□□□□ -0.62
VPS53-210ENST00000571456 C8orf87E5RJ46 101 aa11.15□□□□□ -0.62
VPS53-210ENST00000571456 LINC00313P59037 77 aa11.14□□□□□ -0.63
VPS53-210ENST00000571456 A0A1B0GVX0 72 aa11.13□□□□□ -0.63
VPS53-210ENST00000571456 A0A1B0GV90 55 aa11.12□□□□□ -0.63
VPS53-210ENST00000571456 RPL37P61927 97 aaKnown RBP11.12□□□□□ -0.63
VPS53-210ENST00000571456 A8MWP4 228 aa11.11□□□□□ -0.63
VPS53-210ENST00000571456 Q75L30 129 aa11.1□□□□□ -0.63
VPS53-210ENST00000571456 UBL5Q9BZL1 73 aa11.1□□□□□ -0.63
VPS53-210ENST00000571456 IGHV6-1A0A0B4J1U7 121 aa11.09□□□□□ -0.63
VPS53-210ENST00000571456 DSCR10P59022 87 aa11.07□□□□□ -0.64
VPS53-210ENST00000571456 Q6ZVQ6 151 aa11.07□□□□□ -0.64
VPS53-210ENST00000571456 C20orf166-AS1Q96NR2 134 aa11.07□□□□□ -0.64
VPS53-210ENST00000571456 BPY2O14599 106 aa11.06□□□□□ -0.64
VPS53-210ENST00000571456 ACYP1P07311 99 aa11.04□□□□□ -0.64
VPS53-210ENST00000571456 LINC00846Q9NV44 126 aa11.04□□□□□ -0.64
VPS53-210ENST00000571456 A8MUU9 505 aa11.03□□□□□ -0.64
VPS53-210ENST00000571456 PRR15Q8IV56 129 aa11.03□□□□□ -0.64
VPS53-210ENST00000571456 IGKV3D-7A0A0C4DH55 119 aa11.01□□□□□ -0.65
VPS53-210ENST00000571456 ATP11AUNQ6ZP68 121 aa11.01□□□□□ -0.65
VPS53-210ENST00000571456 FAM240AA0A1B0GVK7 77 aa11□□□□□ -0.65
VPS53-210ENST00000571456 KRTAP9-7A8MTY7 169 aa11□□□□□ -0.65
VPS53-210ENST00000571456 KRTAP16-1A8MUX0 517 aa11□□□□□ -0.65
VPS53-210ENST00000571456 PCOTHQ58A44 107 aa11□□□□□ -0.65
VPS53-210ENST00000571456 NOTCH2NLQ7Z3S9 236 aa10.97□□□□□ -0.65
VPS53-210ENST00000571456 C8orf17Q9NRJ1 99 aa10.97□□□□□ -0.65
VPS53-210ENST00000571456 KRTAP4-1Q9BYQ7 146 aa10.94□□□□□ -0.66
VPS53-210ENST00000571456 K7EQZ3 153 aa10.92□□□□□ -0.66
VPS53-210ENST00000571456 CXCL6P80162 114 aa10.91□□□□□ -0.66
VPS53-210ENST00000571456 Q8N9P0 234 aaPredicted RBP10.89□□□□□ -0.67
VPS53-210ENST00000571456 TMEM254Q8TBM7 123 aa10.89□□□□□ -0.67
VPS53-210ENST00000571456 J3QR89 54 aa10.88□□□□□ -0.67
VPS53-210ENST00000571456 MMP24-AS1A0A0U1RRL7 71 aa10.87□□□□□ -0.67
VPS53-210ENST00000571456 KRTAP9-1A8MXZ3 250 aaPredicted RBP10.87□□□□□ -0.67
VPS53-210ENST00000571456 hDV103S1A0JD37 113 aa10.85□□□□□ -0.67
VPS53-210ENST00000571456 LCE2CQ5TA81 110 aa10.84□□□□□ -0.67
VPS53-210ENST00000571456 ATP5EP2Q5VTU8 51 aa10.84□□□□□ -0.67
VPS53-210ENST00000571456 MRPL34Q9BQ48 92 aaKnown RBP10.84□□□□□ -0.67
VPS53-210ENST00000571456 Q8N9L7 120 aa10.79□□□□□ -0.68
VPS53-210ENST00000571456 CASC2Q6XLA1 102 aa10.78□□□□□ -0.68
VPS53-210ENST00000571456 MT1HP80294 61 aa10.77□□□□□ -0.69
VPS53-210ENST00000571456 ZCCHC13Q8WW36 166 aaKnown RBP10.77□□□□□ -0.69
VPS53-210ENST00000571456 HCG22E2RYF7 251 aa10.76□□□□□ -0.69
VPS53-210ENST00000571456 LORP23490 312 aaPredicted RBP10.75□□□□□ -0.69
VPS53-210ENST00000571456 LINC00643Q86TS7 51 aa10.75□□□□□ -0.69
VPS53-210ENST00000571456 WFDC13Q8IUB5 93 aa10.73□□□□□ -0.69
VPS53-210ENST00000571456 NDUFS5O43920 106 aa10.7□□□□□ -0.7
VPS53-210ENST00000571456 KRTAP10-6P60371 365 aaPredicted RBP10.7□□□□□ -0.7
VPS53-210ENST00000571456 KRTAP19-2Q3LHN2 52 aa10.7□□□□□ -0.7
VPS53-210ENST00000571456 K7ERU9 68 aa10.64□□□□□ -0.71
VPS53-210ENST00000571456 TP53AIP1Q9HCN2 124 aa10.62□□□□□ -0.71
VPS53-210ENST00000571456 HIST1H4AP62805 103 aaKnown RBP10.6□□□□□ -0.71
VPS53-210ENST00000571456 SSPOA2VEC9 5147 aa10.56□□□□□ -0.72
VPS53-210ENST00000571456 SPINK7P58062 85 aa10.56□□□□□ -0.72
VPS53-210ENST00000571456 COX6B2Q6YFQ2 88 aa10.56□□□□□ -0.72
VPS53-210ENST00000571456 RBM12B-AS1Q9P1G2 102 aa10.53□□□□□ -0.72
VPS53-210ENST00000571456 M0R2T5 61 aa10.52□□□□□ -0.73
VPS53-210ENST00000571456 HRES1P13985 223 aa10.49□□□□□ -0.73
VPS53-210ENST00000571456 Q5W150 140 aa10.49□□□□□ -0.73
VPS53-210ENST00000571456 USH2AO75445 5202 aa10.48□□□□□ -0.73
VPS53-210ENST00000571456 C7orf65Q6ZTY9 151 aa10.48□□□□□ -0.73
VPS53-210ENST00000571456 MPLKIPQ8TAP9 179 aa10.48□□□□□ -0.73
VPS53-210ENST00000571456 IMUPQ9GZP8 106 aa10.44□□□□□ -0.74
VPS53-210ENST00000571456 FCGBPQ9Y6R7 5405 aaPredicted RBP10.44□□□□□ -0.74
VPS53-210ENST00000571456 FLGP20930 4061 aaPredicted RBP10.43□□□□□ -0.74
VPS53-210ENST00000571456 A0A087WVE0 104 aa10.42□□□□□ -0.74
VPS53-210ENST00000571456 FAM236DA0A1B0GTK5 79 aa10.41□□□□□ -0.74
VPS53-210ENST00000571456 FAM236CP0DP71 79 aa10.41□□□□□ -0.74
VPS53-210ENST00000571456 IGKV2D-30A0A075B6S6 120 aa10.4□□□□□ -0.74
VPS53-210ENST00000571456 UQCRQO14949 82 aa10.4□□□□□ -0.74
VPS53-210ENST00000571456 IGKV2-30P06310 120 aa10.4□□□□□ -0.74
VPS53-210ENST00000571456 TRAV22A0A0B4J277 110 aa10.37□□□□□ -0.75
VPS53-210ENST00000571456 ATOX1O00244 68 aa10.34□□□□□ -0.75
VPS53-210ENST00000571456 SYNE2Q8WXH0 6885 aaKnown RBP10.31□□□□□ -0.76
VPS53-210ENST00000571456 LOC101927531A0A1B0GV80 90 aa10.3□□□□□ -0.76
VPS53-210ENST00000571456 MT-ATP8P03928 68 aa10.28□□□□□ -0.76
VPS53-210ENST00000571456 SCGB1A1P11684 91 aa10.28□□□□□ -0.76
VPS53-210ENST00000571456 OCR1Q9BZK8 76 aa10.27□□□□□ -0.77
VPS53-210ENST00000571456 MACF1Q9UPN3 7388 aaKnown RBP10.25□□□□□ -0.77
VPS53-210ENST00000571456 H0Y9P7 68 aa10.24□□□□□ -0.77
VPS53-210ENST00000571456 C5orf47Q569G3 176 aa10.23□□□□□ -0.77
VPS53-210ENST00000571456 MP68P56378 58 aa10.22□□□□□ -0.77
VPS53-210ENST00000571456 CYP4F30PQ9H0H9 118 aa10.22□□□□□ -0.77
VPS53-210ENST00000571456 SMIM20Q8N5G0 67 aa10.2□□□□□ -0.78
VPS53-210ENST00000571456 H3BPC8 53 aa10.18□□□□□ -0.78
VPS53-210ENST00000571456 H1FX-AS1Q4G0G2 97 aa10.17□□□□□ -0.78
VPS53-210ENST00000571456 C4orf26Q17RF5 130 aa10.16□□□□□ -0.78
VPS53-210ENST00000571456 KRTAP19-1Q8IUB9 90 aa10.14□□□□□ -0.79
VPS53-210ENST00000571456 C1orf64Q8NEQ6 169 aa10.14□□□□□ -0.79
VPS53-210ENST00000571456 FAM236AA0A1B0GUQ0 79 aa10.13□□□□□ -0.79
VPS53-210ENST00000571456 FAM236BA0A1B0GV22 79 aa10.13□□□□□ -0.79
VPS53-210ENST00000571456 LINC00208Q96KT6 92 aa10.12□□□□□ -0.79
VPS53-210ENST00000571456 TRAV7A0A075B6U4 112 aa10.07□□□□□ -0.8
VPS53-210ENST00000571456 KRTAP9-8Q9BYQ0 159 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 124 ms