RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 NDUFB1O75438 58 aa17.25■□□□□ 0.35
CTCF-203ENST00000566078 A0A087WVE0 104 aa17.23■□□□□ 0.35
CTCF-203ENST00000566078 J3QL48 77 aa17.22■□□□□ 0.35
CTCF-203ENST00000566078 PRR15Q8IV56 129 aa17.22■□□□□ 0.35
CTCF-203ENST00000566078 A0A1B0GVX0 72 aa17.2■□□□□ 0.34
CTCF-203ENST00000566078 IGHV6-1A0A0B4J1U7 121 aa17.18■□□□□ 0.34
CTCF-203ENST00000566078 PCLOQ9Y6V0 5065 aa17.16■□□□□ 0.34
CTCF-203ENST00000566078 C8orf17Q9NRJ1 99 aa17.07■□□□□ 0.32
CTCF-203ENST00000566078 HCG22E2RYF7 251 aa17.06■□□□□ 0.32
CTCF-203ENST00000566078 MMP24-AS1A0A0U1RRL7 71 aa17.05■□□□□ 0.32
CTCF-203ENST00000566078 FAM236AA0A1B0GUQ0 79 aa17.03■□□□□ 0.32
CTCF-203ENST00000566078 FAM236BA0A1B0GV22 79 aa17.03■□□□□ 0.32
CTCF-203ENST00000566078 NOTCH2NLQ7Z3S9 236 aa17.03■□□□□ 0.32
CTCF-203ENST00000566078 WFDC13Q8IUB5 93 aa17.03■□□□□ 0.32
CTCF-203ENST00000566078 C8orf87E5RJ46 101 aa17.02■□□□□ 0.31
CTCF-203ENST00000566078 FP248Q71RG6 208 aaPredicted RBP17.02■□□□□ 0.31
CTCF-203ENST00000566078 LINC00313P59037 77 aa16.98■□□□□ 0.31
CTCF-203ENST00000566078 CASC2Q6XLA1 102 aa16.98■□□□□ 0.31
CTCF-203ENST00000566078 hDV103S1A0JD37 113 aa16.95■□□□□ 0.3
CTCF-203ENST00000566078 PRR4Q16378 134 aa16.92■□□□□ 0.3
CTCF-203ENST00000566078 IGLV7-46A0A075B6I9 117 aa16.91■□□□□ 0.3
CTCF-203ENST00000566078 SCGB1A1P11684 91 aa16.9■□□□□ 0.3
CTCF-203ENST00000566078 C9orf92A6NGG3 77 aa16.89■□□□□ 0.29
CTCF-203ENST00000566078 TMEM254Q8TBM7 123 aa16.88■□□□□ 0.29
CTCF-203ENST00000566078 MRPL34Q9BQ48 92 aaKnown RBP16.84■□□□□ 0.29
CTCF-203ENST00000566078 KRTAP16-1A8MUX0 517 aa16.83■□□□□ 0.28
CTCF-203ENST00000566078 ATOX1O00244 68 aa16.79■□□□□ 0.28
CTCF-203ENST00000566078 KRTAP13-3Q3SY46 172 aa16.75■□□□□ 0.27
CTCF-203ENST00000566078 NDUFS5O43920 106 aa16.73■□□□□ 0.27
CTCF-203ENST00000566078 Q8N9P0 234 aaPredicted RBP16.68■□□□□ 0.26
CTCF-203ENST00000566078 OCR1Q9BZK8 76 aa16.67■□□□□ 0.26
CTCF-203ENST00000566078 TPRXLQ17RH7 258 aa16.66■□□□□ 0.26
CTCF-203ENST00000566078 SMIM20Q8N5G0 67 aa16.65■□□□□ 0.26
CTCF-203ENST00000566078 ANAPC13Q9BS18 74 aa16.63■□□□□ 0.25
CTCF-203ENST00000566078 HERC1Q15751 4861 aa16.63■□□□□ 0.25
CTCF-203ENST00000566078 TRAV7A0A075B6U4 112 aa16.59■□□□□ 0.25
CTCF-203ENST00000566078 C20orf166-AS1Q96NR2 134 aa16.59■□□□□ 0.25
CTCF-203ENST00000566078 TP53AIP1Q9HCN2 124 aa16.59■□□□□ 0.25
CTCF-203ENST00000566078 A8MUU9 505 aa16.58■□□□□ 0.24
CTCF-203ENST00000566078 XP32Q5T750 250 aa16.58■□□□□ 0.24
CTCF-203ENST00000566078 SERP2Q8N6R1 65 aa16.56■□□□□ 0.24
CTCF-203ENST00000566078 UQCRQO14949 82 aa16.54■□□□□ 0.24
CTCF-203ENST00000566078 LPAP08519 4548 aa16.53■□□□□ 0.24
CTCF-203ENST00000566078 Q75L30 129 aa16.51■□□□□ 0.23
CTCF-203ENST00000566078 COX7CP15954 63 aa16.44■□□□□ 0.22
CTCF-203ENST00000566078 TRAV22A0A0B4J277 110 aa16.43■□□□□ 0.22
CTCF-203ENST00000566078 RPL37P61927 97 aaKnown RBP16.43■□□□□ 0.22
CTCF-203ENST00000566078 Q5W150 140 aa16.43■□□□□ 0.22
CTCF-203ENST00000566078 H0Y9P7 68 aa16.41■□□□□ 0.22
CTCF-203ENST00000566078 C5orf47Q569G3 176 aa16.4■□□□□ 0.22
CTCF-203ENST00000566078 ZCCHC13Q8WW36 166 aaKnown RBP16.4■□□□□ 0.22
CTCF-203ENST00000566078 HMCN2Q8NDA2 5059 aa16.4■□□□□ 0.22
CTCF-203ENST00000566078 LRP2P98164 4655 aa16.35■□□□□ 0.21
CTCF-203ENST00000566078 MP68P56378 58 aa16.34■□□□□ 0.21
CTCF-203ENST00000566078 PCP4P48539 62 aa16.33■□□□□ 0.2
CTCF-203ENST00000566078 ATP11AUNQ6ZP68 121 aa16.3■□□□□ 0.2
CTCF-203ENST00000566078 C20orf197Q8N268 126 aa16.29■□□□□ 0.2
CTCF-203ENST00000566078 CCDC179H3BU77 68 aa16.27■□□□□ 0.19
CTCF-203ENST00000566078 LINC00208Q96KT6 92 aa16.26■□□□□ 0.19
CTCF-203ENST00000566078 A0A0U1RQV1 116 aa16.22■□□□□ 0.19
CTCF-203ENST00000566078 H3BPC8 53 aa16.22■□□□□ 0.19
CTCF-203ENST00000566078 C1orf64Q8NEQ6 169 aa16.22■□□□□ 0.19
CTCF-203ENST00000566078 SNURFQ9Y675 71 aa16.22■□□□□ 0.19
CTCF-203ENST00000566078 PCOTHQ58A44 107 aa16.17■□□□□ 0.18
CTCF-203ENST00000566078 LOC101927531A0A1B0GV80 90 aa16.16■□□□□ 0.18
CTCF-203ENST00000566078 KLKP1Q107X0 134 aa16.14■□□□□ 0.17
CTCF-203ENST00000566078 IGKV2D-30A0A075B6S6 120 aa16.12■□□□□ 0.17
CTCF-203ENST00000566078 IGKV2-30P06310 120 aa16.12■□□□□ 0.17
CTCF-203ENST00000566078 SEC61BP60468 96 aaKnown RBP16.1■□□□□ 0.17
CTCF-203ENST00000566078 C7orf65Q6ZTY9 151 aa16.06■□□□□ 0.16
CTCF-203ENST00000566078 CYP4F30PQ9H0H9 118 aa16.05■□□□□ 0.16
CTCF-203ENST00000566078 CYSTM1Q9H1C7 97 aa16.05■□□□□ 0.16
CTCF-203ENST00000566078 MUC17Q685J3 4493 aa16.05■□□□□ 0.16
CTCF-203ENST00000566078 SPINK7P58062 85 aa16■□□□□ 0.15
CTCF-203ENST00000566078 NDUFC1O43677 76 aa15.91■□□□□ 0.14
CTCF-203ENST00000566078 H7BZZ5 65 aa15.88■□□□□ 0.13
CTCF-203ENST00000566078 HRES1P13985 223 aa15.81■□□□□ 0.12
CTCF-203ENST00000566078 KRTAP4-1Q9BYQ7 146 aa15.77■□□□□ 0.12
CTCF-203ENST00000566078 C4orf26Q17RF5 130 aa15.71■□□□□ 0.11
CTCF-203ENST00000566078 SPANXA2-OT1Q8N9U9 137 aa15.68■□□□□ 0.1
CTCF-203ENST00000566078 UBR4Q5T4S7 5183 aa15.67■□□□□ 0.1
CTCF-203ENST00000566078 TMEM258P61165 79 aa15.66■□□□□ 0.1
CTCF-203ENST00000566078 FAM236DA0A1B0GTK5 79 aa15.59■□□□□ 0.09
CTCF-203ENST00000566078 FAM236CP0DP71 79 aa15.59■□□□□ 0.09
CTCF-203ENST00000566078 RNF213Q63HN8 5207 aa15.56■□□□□ 0.08
CTCF-203ENST00000566078 MPLKIPQ8TAP9 179 aa15.55■□□□□ 0.08
CTCF-203ENST00000566078 COX6B2Q6YFQ2 88 aa15.54■□□□□ 0.08
CTCF-203ENST00000566078 ATP5EP56381 51 aaPredicted RBP15.53■□□□□ 0.08
CTCF-203ENST00000566078 RBM12B-AS1Q9P1G2 102 aa15.52■□□□□ 0.08
CTCF-203ENST00000566078 MUC2Q02817 5179 aa15.51■□□□□ 0.07
CTCF-203ENST00000566078 DMAC1Q96GE9 116 aa15.5■□□□□ 0.07
CTCF-203ENST00000566078 KRTAP3-1Q9BYR8 98 aa15.46■□□□□ 0.07
CTCF-203ENST00000566078 A8MUN3 132 aa15.43■□□□□ 0.06
CTCF-203ENST00000566078 ACYP2P14621 99 aa15.35■□□□□ 0.05
CTCF-203ENST00000566078 KRTAP19-2Q3LHN2 52 aa15.27■□□□□ 0.03
CTCF-203ENST00000566078 H1FX-AS1Q4G0G2 97 aa15.26■□□□□ 0.03
CTCF-203ENST00000566078 COA5Q86WW8 74 aa15.24■□□□□ 0.03
CTCF-203ENST00000566078 SERP1Q9Y6X1 66 aa15.17■□□□□ 0.02
CTCF-203ENST00000566078 CHKB-CPT1BH3BT56 60 aa15.14■□□□□ 0.01
CTCF-203ENST00000566078 S4R3F8 94 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms