RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 MTURNQ8N3F0 131 aa9.28□□□□□ -0.92
CLN3-218ENST00000565688 DSCR8Q96T75 97 aa9.28□□□□□ -0.92
CLN3-218ENST00000565688 C21orf62-AS1Q17RA5 79 aa9.27□□□□□ -0.93
CLN3-218ENST00000565688 PYY3Q5JQD4 70 aa9.27□□□□□ -0.93
CLN3-218ENST00000565688 KRTAP9-7A8MTY7 169 aa9.26□□□□□ -0.93
CLN3-218ENST00000565688 MT1FP04733 61 aa9.26□□□□□ -0.93
CLN3-218ENST00000565688 J3KT08 172 aa9.25□□□□□ -0.93
CLN3-218ENST00000565688 SCGB1C2P0DMR2 95 aa9.24□□□□□ -0.93
CLN3-218ENST00000565688 KRTAP10-10P60014 251 aa9.24□□□□□ -0.93
CLN3-218ENST00000565688 ZCCHC13Q8WW36 166 aaKnown RBP9.23□□□□□ -0.93
CLN3-218ENST00000565688 UQCR10Q9UDW1 63 aa9.23□□□□□ -0.93
CLN3-218ENST00000565688 C9JAW5 83 aa9.21□□□□□ -0.94
CLN3-218ENST00000565688 KRTAP9-3Q9BYQ3 159 aa9.21□□□□□ -0.94
CLN3-218ENST00000565688 LCE2BO14633 110 aa9.2□□□□□ -0.94
CLN3-218ENST00000565688 SPINK7P58062 85 aa9.19□□□□□ -0.94
CLN3-218ENST00000565688 NDUFB1O75438 58 aa9.18□□□□□ -0.94
CLN3-218ENST00000565688 BAALC-AS2P0C853 105 aa9.18□□□□□ -0.94
CLN3-218ENST00000565688 Q6ZQT0 140 aa9.17□□□□□ -0.94
CLN3-218ENST00000565688 FCGBPQ9Y6R7 5405 aaPredicted RBP9.16□□□□□ -0.94
CLN3-218ENST00000565688 Q8N9P0 234 aaPredicted RBP9.15□□□□□ -0.94
CLN3-218ENST00000565688 KRTAP19-1Q8IUB9 90 aa9.14□□□□□ -0.95
CLN3-218ENST00000565688 A0A1B0GW54 56 aa9.12□□□□□ -0.95
CLN3-218ENST00000565688 LYRM7Q5U5X0 104 aa9.1□□□□□ -0.95
CLN3-218ENST00000565688 A8MWP4 228 aa9.09□□□□□ -0.95
CLN3-218ENST00000565688 JMJD7-PLA2G4BH0Y9G9 81 aa9.09□□□□□ -0.95
CLN3-218ENST00000565688 C8orf17Q9NRJ1 99 aa9.09□□□□□ -0.95
CLN3-218ENST00000565688 LOC110117498A0A087WWA1 95 aa9.07□□□□□ -0.96
CLN3-218ENST00000565688 PDE6GP18545 87 aa9.06□□□□□ -0.96
CLN3-218ENST00000565688 ATXN8Q156A1 80 aa9.06□□□□□ -0.96
CLN3-218ENST00000565688 WFDC13Q8IUB5 93 aa9.06□□□□□ -0.96
CLN3-218ENST00000565688 IGKV3D-7A0A0C4DH55 119 aa9.04□□□□□ -0.96
CLN3-218ENST00000565688 LINC00846Q9NV44 126 aa9.04□□□□□ -0.96
CLN3-218ENST00000565688 Q6ZVQ6 151 aa9.02□□□□□ -0.97
CLN3-218ENST00000565688 TMA7Q9Y2S6 64 aaKnown RBP9.01□□□□□ -0.97
CLN3-218ENST00000565688 M0R143 59 aa9□□□□□ -0.97
CLN3-218ENST00000565688 PRR15Q8IV56 129 aa8.99□□□□□ -0.97
CLN3-218ENST00000565688 C14orf132Q9NPU4 83 aa8.97□□□□□ -0.97
CLN3-218ENST00000565688 NREPQ16612 68 aa8.96□□□□□ -0.98
CLN3-218ENST00000565688 NAA38Q9BRA0 125 aaKnown RBP8.96□□□□□ -0.98
CLN3-218ENST00000565688 KRTAP19-6Q3LI70 58 aa8.94□□□□□ -0.98
CLN3-218ENST00000565688 TMEM254Q8TBM7 123 aa8.94□□□□□ -0.98
CLN3-218ENST00000565688 MRPL34Q9BQ48 92 aaKnown RBP8.93□□□□□ -0.98
CLN3-218ENST00000565688 MMP24-AS1A0A0U1RRL7 71 aa8.91□□□□□ -0.98
CLN3-218ENST00000565688 MACF1Q9UPN3 7388 aaKnown RBP8.91□□□□□ -0.98
CLN3-218ENST00000565688 H1FX-AS1Q4G0G2 97 aa8.9□□□□□ -0.98
CLN3-218ENST00000565688 hDV103S1A0JD37 113 aa8.88□□□□□ -0.99
CLN3-218ENST00000565688 NDUFS5O43920 106 aa8.86□□□□□ -0.99
CLN3-218ENST00000565688 K7EQZ3 153 aa8.83□□□□□ -1
CLN3-218ENST00000565688 SYNE2Q8WXH0 6885 aaKnown RBP8.82□□□□□ -1
CLN3-218ENST00000565688 IGKV2D-30A0A075B6S6 120 aa8.79□□□□□ -1
CLN3-218ENST00000565688 IGKV2-30P06310 120 aa8.79□□□□□ -1
CLN3-218ENST00000565688 BPY2O14599 106 aa8.78□□□□□ -1
CLN3-218ENST00000565688 C7orf65Q6ZTY9 151 aa8.78□□□□□ -1
CLN3-218ENST00000565688 H3BT86 120 aa8.77□□□□□ -1.01
CLN3-218ENST00000565688 SMIM6P0DI80 62 aa8.75□□□□□ -1.01
CLN3-218ENST00000565688 Q5W150 140 aa8.74□□□□□ -1.01
CLN3-218ENST00000565688 BATFQ16520 125 aa8.73□□□□□ -1.01
CLN3-218ENST00000565688 TSTD3H0UI37 97 aa8.7□□□□□ -1.02
CLN3-218ENST00000565688 CASC2Q6XLA1 102 aa8.7□□□□□ -1.02
CLN3-218ENST00000565688 C9orf118A6NHY6 69 aa8.69□□□□□ -1.02
CLN3-218ENST00000565688 HCG22E2RYF7 251 aa8.67□□□□□ -1.02
CLN3-218ENST00000565688 A0A1W2PPM0 123 aa8.66□□□□□ -1.02
CLN3-218ENST00000565688 CXCL6P80162 114 aa8.65□□□□□ -1.02
CLN3-218ENST00000565688 C4orf26Q17RF5 130 aa8.65□□□□□ -1.02
CLN3-218ENST00000565688 KRTAP6-3Q3LI67 103 aa8.65□□□□□ -1.02
CLN3-218ENST00000565688 Q8N9L7 120 aa8.65□□□□□ -1.02
CLN3-218ENST00000565688 LOC105371267A0A1B0GV96 52 aa8.62□□□□□ -1.03
CLN3-218ENST00000565688 TAX1BP3O14907 124 aa8.62□□□□□ -1.03
CLN3-218ENST00000565688 C5orf47Q569G3 176 aa8.57□□□□□ -1.04
CLN3-218ENST00000565688 FAM236AA0A1B0GUQ0 79 aa8.56□□□□□ -1.04
CLN3-218ENST00000565688 FAM236BA0A1B0GV22 79 aa8.56□□□□□ -1.04
CLN3-218ENST00000565688 UBL5Q9BZL1 73 aa8.53□□□□□ -1.04
CLN3-218ENST00000565688 SPCS1Q9Y6A9 102 aa8.53□□□□□ -1.04
CLN3-218ENST00000565688 S4R3F8 94 aa8.52□□□□□ -1.05
CLN3-218ENST00000565688 CSAG1Q6PB30 78 aa8.5□□□□□ -1.05
CLN3-218ENST00000565688 KRTAP3-1Q9BYR8 98 aa8.5□□□□□ -1.05
CLN3-218ENST00000565688 SMCPP49901 116 aaPredicted RBP8.48□□□□□ -1.05
CLN3-218ENST00000565688 C1orf64Q8NEQ6 169 aa8.48□□□□□ -1.05
CLN3-218ENST00000565688 A6NN06 94 aa8.47□□□□□ -1.05
CLN3-218ENST00000565688 Q5VV11 94 aa8.47□□□□□ -1.05
CLN3-218ENST00000565688 MT1BP07438 61 aa8.44□□□□□ -1.06
CLN3-218ENST00000565688 LCA10Q71F78 164 aa8.44□□□□□ -1.06
CLN3-218ENST00000565688 SPRR2GQ9BYE4 73 aa8.44□□□□□ -1.06
CLN3-218ENST00000565688 TP53AIP1Q9HCN2 124 aa8.43□□□□□ -1.06
CLN3-218ENST00000565688 KRTAP19-8Q3LI54 63 aa8.42□□□□□ -1.06
CLN3-218ENST00000565688 PRO0461Q9UI25 63 aa8.39□□□□□ -1.07
CLN3-218ENST00000565688 KLKP1Q107X0 134 aa8.35□□□□□ -1.07
CLN3-218ENST00000565688 COL5A1-AS1Q5SY13 56 aa8.34□□□□□ -1.07
CLN3-218ENST00000565688 K7EP34 96 aa8.33□□□□□ -1.08
CLN3-218ENST00000565688 KRTAP10-5P60370 271 aa8.32□□□□□ -1.08
CLN3-218ENST00000565688 NEBP20929 6669 aa8.31□□□□□ -1.08
CLN3-218ENST00000565688 KRTAP3-3Q9BYR6 98 aa8.28□□□□□ -1.08
CLN3-218ENST00000565688 CYP4F30PQ9H0H9 118 aa8.27□□□□□ -1.09
CLN3-218ENST00000565688 CRIPTQ9P021 101 aa8.26□□□□□ -1.09
CLN3-218ENST00000565688 MUC12Q9UKN1 5478 aa8.23□□□□□ -1.09
CLN3-218ENST00000565688 GTF2H5Q6ZYL4 71 aa8.21□□□□□ -1.1
CLN3-218ENST00000565688 TRAV22A0A0B4J277 110 aa8.2□□□□□ -1.1
CLN3-218ENST00000565688 LOC101927531A0A1B0GV80 90 aa8.19□□□□□ -1.1
CLN3-218ENST00000565688 F8W1H4 67 aa8.19□□□□□ -1.1
CLN3-218ENST00000565688 IMUPQ9GZP8 106 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms