RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 C1orf195Q5TG92 126 aa3.16□□□□□ -1.9
VPS13C-209ENST00000560637 C1orf64Q8NEQ6 169 aa3.16□□□□□ -1.9
VPS13C-209ENST00000560637 KIAA1109Q2LD37 5005 aa3.16□□□□□ -1.9
VPS13C-209ENST00000560637 SERP2Q8N6R1 65 aa3.16□□□□□ -1.9
VPS13C-209ENST00000560637 KMT2AQ03164 3969 aa3.16□□□□□ -1.9
VPS13C-209ENST00000560637 KRTAP23-1A1A580 65 aa3.15□□□□□ -1.91
VPS13C-209ENST00000560637 FAT1Q14517 4588 aa3.15□□□□□ -1.91
VPS13C-209ENST00000560637 IMUPQ9GZP8 106 aa3.15□□□□□ -1.91
VPS13C-209ENST00000560637 DNAH5Q8TE73 4624 aa3.15□□□□□ -1.91
VPS13C-209ENST00000560637 KMT2CQ8NEZ4 4911 aaKnown RBP3.15□□□□□ -1.91
VPS13C-209ENST00000560637 DNAH1Q9P2D7 4330 aa3.15□□□□□ -1.91
VPS13C-209ENST00000560637 NOTCH2NLQ7Z3S9 236 aa3.14□□□□□ -1.91
VPS13C-209ENST00000560637 BIRC6Q9NR09 4857 aa3.14□□□□□ -1.91
VPS13C-209ENST00000560637 HYDINQ4G0P3 5121 aa3.14□□□□□ -1.91
VPS13C-209ENST00000560637 LINC00483Q53H64 154 aa3.14□□□□□ -1.91
VPS13C-209ENST00000560637 TMEM254Q8TBM7 123 aa3.14□□□□□ -1.91
VPS13C-209ENST00000560637 KRTAP1-4P0C5Y4 121 aa3.13□□□□□ -1.91
VPS13C-209ENST00000560637 SMIM20Q8N5G0 67 aa3.13□□□□□ -1.91
VPS13C-209ENST00000560637 TRAV22A0A0B4J277 110 aa3.13□□□□□ -1.91
VPS13C-209ENST00000560637 KRTAP4-5Q9BYR2 181 aa3.13□□□□□ -1.91
VPS13C-209ENST00000560637 TRAV7A0A075B6U4 112 aa3.13□□□□□ -1.91
VPS13C-209ENST00000560637 UQCRQO14949 82 aa3.13□□□□□ -1.91
VPS13C-209ENST00000560637 IGLV8-61A0A075B6I0 122 aa3.12□□□□□ -1.91
VPS13C-209ENST00000560637 COX7CP15954 63 aa3.12□□□□□ -1.91
VPS13C-209ENST00000560637 A0A1B0GW54 56 aa3.12□□□□□ -1.91
VPS13C-209ENST00000560637 LINC00472Q9H8W2 130 aa3.12□□□□□ -1.91
VPS13C-209ENST00000560637 C8orf87E5RJ46 101 aa3.11□□□□□ -1.91
VPS13C-209ENST00000560637 C7orf65Q6ZTY9 151 aa3.11□□□□□ -1.91
VPS13C-209ENST00000560637 CD164Q04900 197 aa3.11□□□□□ -1.91
VPS13C-209ENST00000560637 LINC01600Q96MT4 127 aa3.11□□□□□ -1.91
VPS13C-209ENST00000560637 MPLKIPQ8TAP9 179 aa3.11□□□□□ -1.91
VPS13C-209ENST00000560637 C4orf26Q17RF5 130 aa3.1□□□□□ -1.91
VPS13C-209ENST00000560637 RYR3Q15413 4870 aa3.1□□□□□ -1.91
VPS13C-209ENST00000560637 RYR2Q92736 4967 aa3.1□□□□□ -1.91
VPS13C-209ENST00000560637 DNAH6Q9C0G6 4158 aa3.09□□□□□ -1.91
VPS13C-209ENST00000560637 RYR1P21817 5038 aa3.09□□□□□ -1.92
VPS13C-209ENST00000560637 MMP24-AS1A0A0U1RRL7 71 aa3.08□□□□□ -1.92
VPS13C-209ENST00000560637 DYNC1H1Q14204 4646 aaKnown RBP3.08□□□□□ -1.92
VPS13C-209ENST00000560637 TP53AIP1Q9HCN2 124 aa3.08□□□□□ -1.92
VPS13C-209ENST00000560637 DNAH7Q8WXX0 4024 aa3.07□□□□□ -1.92
VPS13C-209ENST00000560637 M0R2T5 61 aa3.07□□□□□ -1.92
VPS13C-209ENST00000560637 Q8N9P0 234 aaPredicted RBP3.07□□□□□ -1.92
VPS13C-209ENST00000560637 VPS13DQ5THJ4 4388 aa3.07□□□□□ -1.92
VPS13C-209ENST00000560637 LRP1BQ9NZR2 4599 aa3.06□□□□□ -1.92
VPS13C-209ENST00000560637 SACSQ9NZJ4 4579 aa3.06□□□□□ -1.92
VPS13C-209ENST00000560637 XP32Q5T750 250 aa3.05□□□□□ -1.92
VPS13C-209ENST00000560637 SPINK7P58062 85 aa3.04□□□□□ -1.92
VPS13C-209ENST00000560637 ZCCHC13Q8WW36 166 aaKnown RBP3.03□□□□□ -1.92
VPS13C-209ENST00000560637 LOC101927531A0A1B0GV80 90 aa3.03□□□□□ -1.93
VPS13C-209ENST00000560637 Q5W150 140 aa3.02□□□□□ -1.93
VPS13C-209ENST00000560637 PRAC1Q96KF2 57 aa3.02□□□□□ -1.93
VPS13C-209ENST00000560637 KRTAP17-1Q9BYP8 105 aa3.02□□□□□ -1.93
VPS13C-209ENST00000560637 RBM12B-AS1Q9P1G2 102 aa3.02□□□□□ -1.93
VPS13C-209ENST00000560637 TMEM258P61165 79 aa3.01□□□□□ -1.93
VPS13C-209ENST00000560637 OCR1Q9BZK8 76 aa3.01□□□□□ -1.93
VPS13C-209ENST00000560637 NDUFC1O43677 76 aa3□□□□□ -1.93
VPS13C-209ENST00000560637 PKHD1P08F94 4074 aa3□□□□□ -1.93
VPS13C-209ENST00000560637 PSPHP1O15172 72 aa3□□□□□ -1.93
VPS13C-209ENST00000560637 DNAH2Q9P225 4427 aa3□□□□□ -1.93
VPS13C-209ENST00000560637 FP248Q71RG6 208 aaPredicted RBP3□□□□□ -1.93
VPS13C-209ENST00000560637 DNAH8Q96JB1 4490 aa3□□□□□ -1.93
VPS13C-209ENST00000560637 HRES1P13985 223 aa2.99□□□□□ -1.93
VPS13C-209ENST00000560637 KRTAP10-8P60410 259 aa2.99□□□□□ -1.93
VPS13C-209ENST00000560637 SERP1Q9Y6X1 66 aa2.99□□□□□ -1.93
VPS13C-209ENST00000560637 HERC2O95714 4834 aa2.99□□□□□ -1.93
VPS13C-209ENST00000560637 EPPK1P58107 5090 aaKnown RBP2.99□□□□□ -1.93
VPS13C-209ENST00000560637 MYCBP2O75592 4640 aa2.99□□□□□ -1.93
VPS13C-209ENST00000560637 FAT3Q8TDW7 4589 aa2.98□□□□□ -1.93
VPS13C-209ENST00000560637 DNAH17Q9UFH2 4485 aa2.98□□□□□ -1.93
VPS13C-209ENST00000560637 ACYP2P14621 99 aa2.98□□□□□ -1.93
VPS13C-209ENST00000560637 LINC01554Q52M75 96 aa2.98□□□□□ -1.93
VPS13C-209ENST00000560637 CYSTM1Q9H1C7 97 aa2.98□□□□□ -1.93
VPS13C-209ENST00000560637 APOBP04114 4563 aaKnown RBP2.98□□□□□ -1.93
VPS13C-209ENST00000560637 VPS13BQ7Z7G8 4022 aa2.97□□□□□ -1.93
VPS13C-209ENST00000560637 LRP1Q07954 4544 aaKnown RBP2.97□□□□□ -1.93
VPS13C-209ENST00000560637 PRR15LQ9BU68 103 aa2.97□□□□□ -1.93
VPS13C-209ENST00000560637 FRAS1Q86XX4 4008 aa2.96□□□□□ -1.94
VPS13C-209ENST00000560637 KRTAP29-1A8MX34 341 aaPredicted RBP2.96□□□□□ -1.94
VPS13C-209ENST00000560637 CYP4F30PQ9H0H9 118 aa2.96□□□□□ -1.94
VPS13C-209ENST00000560637 KRTAP10-4P60372 401 aaPredicted RBP2.96□□□□□ -1.94
VPS13C-209ENST00000560637 A0A0U1RQV1 116 aa2.95□□□□□ -1.94
VPS13C-209ENST00000560637 MT1HL1P0DM35 61 aa2.95□□□□□ -1.94
VPS13C-209ENST00000560637 COA5Q86WW8 74 aa2.95□□□□□ -1.94
VPS13C-209ENST00000560637 SPTSSBQ8NFR3 76 aa2.95□□□□□ -1.94
VPS13C-209ENST00000560637 H3BPC8 53 aa2.95□□□□□ -1.94
VPS13C-209ENST00000560637 H7BZZ5 65 aa2.95□□□□□ -1.94
VPS13C-209ENST00000560637 A6NED7 52 aa2.94□□□□□ -1.94
VPS13C-209ENST00000560637 RPS29P62273 56 aaKnown RBP2.94□□□□□ -1.94
VPS13C-209ENST00000560637 ASB16-AS1Q495Z4 193 aa2.94□□□□□ -1.94
VPS13C-209ENST00000560637 RPL37P61927 97 aaKnown RBP2.94□□□□□ -1.94
VPS13C-209ENST00000560637 KLKP1Q107X0 134 aa2.93□□□□□ -1.94
VPS13C-209ENST00000560637 PRO0628Q9UI54 55 aa2.93□□□□□ -1.94
VPS13C-209ENST00000560637 Q5XG85 94 aa2.93□□□□□ -1.94
VPS13C-209ENST00000560637 BRK1Q8WUW1 75 aa2.93□□□□□ -1.94
VPS13C-209ENST00000560637 A0A1B0GU69 56 aa2.92□□□□□ -1.94
VPS13C-209ENST00000560637 KRTAP13-3Q3SY46 172 aa2.92□□□□□ -1.94
VPS13C-209ENST00000560637 A0A0D9SG42 100 aa2.91□□□□□ -1.94
VPS13C-209ENST00000560637 ATP5EP56381 51 aaPredicted RBP2.91□□□□□ -1.94
VPS13C-209ENST00000560637 FAT2Q9NYQ8 4349 aa2.9□□□□□ -1.95
VPS13C-209ENST00000560637 SMIM26A0A096LP01 95 aa2.89□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms