RNA–Protein interactions for RNA: ENST00000559989.1

CSPG4P12-202, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 12, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P12, Length 7,790 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P12-202ENST00000559989 KALRNO60229 2985 aa6.51□□□□□ -1.37
CSPG4P12-202ENST00000559989 DSPP15924 2871 aaKnown RBP6.51□□□□□ -1.37
CSPG4P12-202ENST00000559989 CRCT1Q9UGL9 99 aa6.49□□□□□ -1.37
CSPG4P12-202ENST00000559989 TGP01266 2768 aa6.48□□□□□ -1.37
CSPG4P12-202ENST00000559989 LAMA1P25391 3075 aa6.47□□□□□ -1.37
CSPG4P12-202ENST00000559989 CRYBG3Q68DQ2 2970 aa6.46□□□□□ -1.37
CSPG4P12-202ENST00000559989 RANBP2P49792 3224 aaKnown RBP6.44□□□□□ -1.38
CSPG4P12-202ENST00000559989 LRBAP50851 2863 aa6.43□□□□□ -1.38
CSPG4P12-202ENST00000559989 TENM3Q9P273 2699 aa6.41□□□□□ -1.38
CSPG4P12-202ENST00000559989 CELSR3Q9NYQ7 3312 aa6.41□□□□□ -1.38
CSPG4P12-202ENST00000559989 KRTAP10-12P60413 245 aa6.4□□□□□ -1.39
CSPG4P12-202ENST00000559989 TRANK1O15050 2925 aa6.37□□□□□ -1.39
CSPG4P12-202ENST00000559989 XIRP2A4UGR9 3374 aa6.34□□□□□ -1.39
CSPG4P12-202ENST00000559989 CHD7Q9P2D1 2997 aa6.34□□□□□ -1.4
CSPG4P12-202ENST00000559989 ASH1LQ9NR48 2969 aaKnown RBP6.33□□□□□ -1.4
CSPG4P12-202ENST00000559989 CHD9Q3L8U1 2897 aa6.33□□□□□ -1.4
CSPG4P12-202ENST00000559989 COL12A1Q99715 3063 aa6.32□□□□□ -1.4
CSPG4P12-202ENST00000559989 MKI67P46013 3256 aaKnown RBP6.32□□□□□ -1.4
CSPG4P12-202ENST00000559989 LAMA3Q16787 3333 aa6.32□□□□□ -1.4
CSPG4P12-202ENST00000559989 HIVEP1P15822 2718 aa6.31□□□□□ -1.4
CSPG4P12-202ENST00000559989 KRTAP3-1Q9BYR8 98 aa6.3□□□□□ -1.4
CSPG4P12-202ENST00000559989 KRTAP10-6P60371 365 aaPredicted RBP6.26□□□□□ -1.41
CSPG4P12-202ENST00000559989 FRYLO94915 3013 aa6.26□□□□□ -1.41
CSPG4P12-202ENST00000559989 BRCA2P51587 3418 aa6.26□□□□□ -1.41
CSPG4P12-202ENST00000559989 PRUNE2Q8WUY3 3088 aa6.25□□□□□ -1.41
CSPG4P12-202ENST00000559989 VPS13AQ96RL7 3174 aa6.25□□□□□ -1.41
CSPG4P12-202ENST00000559989 TENM1Q9UKZ4 2725 aa6.24□□□□□ -1.41
CSPG4P12-202ENST00000559989 HTTP42858 3142 aa6.23□□□□□ -1.41
CSPG4P12-202ENST00000559989 KRTAP23-1A1A580 65 aa6.2□□□□□ -1.42
CSPG4P12-202ENST00000559989 KRTAP12-3P60328 96 aa6.19□□□□□ -1.42
CSPG4P12-202ENST00000559989 DMXL2Q8TDJ6 3036 aa6.16□□□□□ -1.42
CSPG4P12-202ENST00000559989 KRTAP10-5P60370 271 aa6.13□□□□□ -1.43
CSPG4P12-202ENST00000559989 COL6A3P12111 3177 aa6.12□□□□□ -1.43
CSPG4P12-202ENST00000559989 DNAH14Q0VDD8 3507 aa6.1□□□□□ -1.43
CSPG4P12-202ENST00000559989 ZZEF1O43149 2961 aa6.08□□□□□ -1.44
CSPG4P12-202ENST00000559989 CFAP47Q6ZTR5 3102 aa6.05□□□□□ -1.44
CSPG4P12-202ENST00000559989 ATMQ13315 3056 aa6.05□□□□□ -1.44
CSPG4P12-202ENST00000559989 CELSR1Q9NYQ6 3014 aa6.04□□□□□ -1.44
CSPG4P12-202ENST00000559989 PDZD2O15018 2839 aa6.04□□□□□ -1.44
CSPG4P12-202ENST00000559989 CELSR2Q9HCU4 2923 aa6.03□□□□□ -1.44
CSPG4P12-202ENST00000559989 LCE3AQ5TA76 89 aa6.02□□□□□ -1.44
CSPG4P12-202ENST00000559989 USP34Q70CQ2 3546 aa5.99□□□□□ -1.45
CSPG4P12-202ENST00000559989 ADGRG4Q8IZF6 3080 aa5.98□□□□□ -1.45
CSPG4P12-202ENST00000559989 BOD1L1Q8NFC6 3051 aa5.98□□□□□ -1.45
CSPG4P12-202ENST00000559989 TNRC18O15417 2968 aaPredicted RBP5.98□□□□□ -1.45
CSPG4P12-202ENST00000559989 NF1P21359 2839 aa5.97□□□□□ -1.45
CSPG4P12-202ENST00000559989 TENM2Q9NT68 2774 aa5.96□□□□□ -1.45
CSPG4P12-202ENST00000559989 SPEGQ15772 3267 aa5.96□□□□□ -1.45
CSPG4P12-202ENST00000559989 FLNCQ14315 2725 aa5.96□□□□□ -1.45
CSPG4P12-202ENST00000559989 KRTAP3-2Q9BYR7 98 aa5.93□□□□□ -1.46
CSPG4P12-202ENST00000559989 CDH23Q9H251 3354 aa5.92□□□□□ -1.46
CSPG4P12-202ENST00000559989 ZFHX4Q86UP3 3567 aa5.92□□□□□ -1.46
CSPG4P12-202ENST00000559989 NIPBLQ6KC79 2804 aaeCLIP5.91□□□□□ -1.46
CSPG4P12-202ENST00000559989 KRTAP3-3Q9BYR6 98 aa5.88□□□□□ -1.47
CSPG4P12-202ENST00000559989 DCHS2Q6V1P9 2916 aa5.88□□□□□ -1.47
CSPG4P12-202ENST00000559989 TACC2O95359 2948 aa5.86□□□□□ -1.47
CSPG4P12-202ENST00000559989 TENM4Q6N022 2769 aa5.85□□□□□ -1.47
CSPG4P12-202ENST00000559989 DMXL1Q9Y485 3027 aa5.85□□□□□ -1.47
CSPG4P12-202ENST00000559989 SRRM2Q9UQ35 2752 aaKnown RBP5.84□□□□□ -1.47
CSPG4P12-202ENST00000559989 ZANQ9Y493 2812 aa5.84□□□□□ -1.47
CSPG4P12-202ENST00000559989 KRTAP8-1Q8IUC2 63 aa5.83□□□□□ -1.48
CSPG4P12-202ENST00000559989 SZT2Q5T011 3432 aa5.81□□□□□ -1.48
CSPG4P12-202ENST00000559989 NBEAQ8NFP9 2946 aa5.79□□□□□ -1.48
CSPG4P12-202ENST00000559989 VCANP13611 3396 aa5.77□□□□□ -1.49
CSPG4P12-202ENST00000559989 NBPF19A0A087WUL8 3843 aa5.74□□□□□ -1.49
CSPG4P12-202ENST00000559989 LOC400499M0QZD8 3231 aa5.69□□□□□ -1.5
CSPG4P12-202ENST00000559989 ZFHX3Q15911 3703 aa5.69□□□□□ -1.5
CSPG4P12-202ENST00000559989 DCHS1Q96JQ0 3298 aa5.69□□□□□ -1.5
CSPG4P12-202ENST00000559989 EYSQ5T1H1 3165 aa5.65□□□□□ -1.51
CSPG4P12-202ENST00000559989 FBN2P35556 2912 aa5.63□□□□□ -1.51
CSPG4P12-202ENST00000559989 MEGF8Q7Z7M0 2845 aa5.62□□□□□ -1.51
CSPG4P12-202ENST00000559989 MXRA5Q9NR99 2828 aa5.6□□□□□ -1.51
CSPG4P12-202ENST00000559989 VWFP04275 2813 aa5.6□□□□□ -1.51
CSPG4P12-202ENST00000559989 MT1HL1P0DM35 61 aa5.6□□□□□ -1.51
CSPG4P12-202ENST00000559989 HRNRQ86YZ3 2850 aaPredicted RBP5.57□□□□□ -1.52
CSPG4P12-202ENST00000559989 KRTAP10-7P60409 375 aaPredicted RBP5.55□□□□□ -1.52
CSPG4P12-202ENST00000559989 WDFY3Q8IZQ1 3526 aa5.54□□□□□ -1.52
CSPG4P12-202ENST00000559989 ASPMQ8IZT6 3477 aa5.52□□□□□ -1.53
CSPG4P12-202ENST00000559989 PKD1L1Q8TDX9 2849 aa5.52□□□□□ -1.53
CSPG4P12-202ENST00000559989 SPENQ96T58 3664 aaKnown RBP5.52□□□□□ -1.53
CSPG4P12-202ENST00000559989 LORP23490 312 aaPredicted RBP5.51□□□□□ -1.53
CSPG4P12-202ENST00000559989 ALMS1Q8TCU4 4167 aa5.5□□□□□ -1.53
CSPG4P12-202ENST00000559989 SPTBN5Q9NRC6 3674 aaKnown RBP5.48□□□□□ -1.53
CSPG4P12-202ENST00000559989 COL7A1Q02388 2944 aa5.47□□□□□ -1.53
CSPG4P12-202ENST00000559989 CSMD1Q96PZ7 3565 aa5.43□□□□□ -1.54
CSPG4P12-202ENST00000559989 LAMA5O15230 3695 aa5.37□□□□□ -1.55
CSPG4P12-202ENST00000559989 FBN3Q75N90 2809 aa5.37□□□□□ -1.55
CSPG4P12-202ENST00000559989 MYO15AQ9UKN7 3530 aa5.36□□□□□ -1.55
CSPG4P12-202ENST00000559989 LCE3CQ5T5A8 94 aa5.36□□□□□ -1.55
CSPG4P12-202ENST00000559989 KRTAP19-4Q3LI73 84 aa5.3□□□□□ -1.56
CSPG4P12-202ENST00000559989 SPRR2FQ96RM1 72 aa5.28□□□□□ -1.56
CSPG4P12-202ENST00000559989 HUWE1Q7Z6Z7 4374 aaKnown RBP5.28□□□□□ -1.56
CSPG4P12-202ENST00000559989 KRTAP19-5Q3LI72 72 aa5.27□□□□□ -1.57
CSPG4P12-202ENST00000559989 AKAP9Q99996 3911 aa5.24□□□□□ -1.57
CSPG4P12-202ENST00000559989 KRTAP10-4P60372 401 aaPredicted RBP5.22□□□□□ -1.57
CSPG4P12-202ENST00000559989 KRTAP4-5Q9BYR2 181 aa5.21□□□□□ -1.57
CSPG4P12-202ENST00000559989 SMG1Q96Q15 3661 aaKnown RBP5.21□□□□□ -1.58
CSPG4P12-202ENST00000559989 OTOGQ6ZRI0 2925 aa5.16□□□□□ -1.58
CSPG4P12-202ENST00000559989 RELNP78509 3460 aa5.16□□□□□ -1.58
CSPG4P12-202ENST00000559989 SPRR2GQ9BYE4 73 aa5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 162.4 ms