RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 NDUFAF8A1L188 74 aa8.1□□□□□ -1.11
SHMT2-226ENST00000556825 DNHD1Q96M86 4753 aa8.1□□□□□ -1.11
SHMT2-226ENST00000556825 KRTAP24-1Q3LI83 254 aa8.08□□□□□ -1.12
SHMT2-226ENST00000556825 TRRAPQ9Y4A5 3859 aa8.07□□□□□ -1.12
SHMT2-226ENST00000556825 NUPR2A6NF83 97 aa8.06□□□□□ -1.12
SHMT2-226ENST00000556825 LINC01556Q5JQF7 62 aa8.06□□□□□ -1.12
SHMT2-226ENST00000556825 H3BNG1 76 aa8.03□□□□□ -1.12
SHMT2-226ENST00000556825 SPINT4Q6UDR6 99 aa8.03□□□□□ -1.12
SHMT2-226ENST00000556825 CRIPTQ9P021 101 aa8.02□□□□□ -1.13
SHMT2-226ENST00000556825 H0YAA0 97 aa8.02□□□□□ -1.13
SHMT2-226ENST00000556825 LY6G6CO95867 125 aa8.02□□□□□ -1.13
SHMT2-226ENST00000556825 A0A087WTM6 91 aa8.01□□□□□ -1.13
SHMT2-226ENST00000556825 KRTAP11-1Q8IUC1 163 aa8.01□□□□□ -1.13
SHMT2-226ENST00000556825 KRTAP10-11P60412 298 aa8□□□□□ -1.13
SHMT2-226ENST00000556825 SSBP3-AS1Q7Z2R9 100 aa7.98□□□□□ -1.13
SHMT2-226ENST00000556825 PANO1I0J062 215 aa7.98□□□□□ -1.13
SHMT2-226ENST00000556825 KRTAP15-1Q3LI76 137 aa7.98□□□□□ -1.13
SHMT2-226ENST00000556825 Q6ZSA8 131 aa7.98□□□□□ -1.13
SHMT2-226ENST00000556825 STAB1Q9NY15 2570 aa7.97□□□□□ -1.13
SHMT2-226ENST00000556825 IGKV2-30P06310 120 aa7.97□□□□□ -1.13
SHMT2-226ENST00000556825 FBN1P35555 2871 aaKnown RBP7.96□□□□□ -1.13
SHMT2-226ENST00000556825 CMYA5Q8N3K9 4069 aa7.95□□□□□ -1.14
SHMT2-226ENST00000556825 IGLV9-49A0A0B4J1Y8 123 aa7.92□□□□□ -1.14
SHMT2-226ENST00000556825 FAM229AH3BQW9 127 aa7.92□□□□□ -1.14
SHMT2-226ENST00000556825 PSORS1C2Q9UIG4 136 aa7.91□□□□□ -1.14
SHMT2-226ENST00000556825 PKD1L1Q8TDX9 2849 aa7.9□□□□□ -1.14
SHMT2-226ENST00000556825 CHTF8P0CG12 524 aa7.89□□□□□ -1.15
SHMT2-226ENST00000556825 COL6A5A8TX70 2615 aa7.88□□□□□ -1.15
SHMT2-226ENST00000556825 ANK2Q01484 3957 aa7.87□□□□□ -1.15
SHMT2-226ENST00000556825 DNAH3Q8TD57 4116 aa7.85□□□□□ -1.15
SHMT2-226ENST00000556825 K7ERS5 55 aa7.85□□□□□ -1.15
SHMT2-226ENST00000556825 IGKV2D-30A0A075B6S6 120 aa7.84□□□□□ -1.15
SHMT2-226ENST00000556825 LUZP6Q538Z0 58 aa7.84□□□□□ -1.15
SHMT2-226ENST00000556825 A0A1B0GU33 70 aa7.83□□□□□ -1.16
SHMT2-226ENST00000556825 TENM3Q9P273 2699 aa7.83□□□□□ -1.16
SHMT2-226ENST00000556825 KRTAP13-1Q8IUC0 172 aa7.82□□□□□ -1.16
SHMT2-226ENST00000556825 SPINK1P00995 79 aa7.82□□□□□ -1.16
SHMT2-226ENST00000556825 NBEAL1Q6ZS30 2694 aa7.81□□□□□ -1.16
SHMT2-226ENST00000556825 NOTCH1P46531 2555 aa7.8□□□□□ -1.16
SHMT2-226ENST00000556825 FLG2Q5D862 2391 aaPredicted RBP7.8□□□□□ -1.16
SHMT2-226ENST00000556825 SPINK6Q6UWN8 80 aa7.79□□□□□ -1.16
SHMT2-226ENST00000556825 SRRM2Q9UQ35 2752 aaKnown RBP7.79□□□□□ -1.16
SHMT2-226ENST00000556825 TPRXLQ17RH7 258 aa7.78□□□□□ -1.16
SHMT2-226ENST00000556825 H1FX-AS1Q4G0G2 97 aa7.78□□□□□ -1.16
SHMT2-226ENST00000556825 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.78□□□□□ -1.16
SHMT2-226ENST00000556825 ANAPC11Q9NYG5 84 aa7.76□□□□□ -1.17
SHMT2-226ENST00000556825 CSMD3Q7Z407 3707 aa7.74□□□□□ -1.17
SHMT2-226ENST00000556825 WWC2-AS2Q96NR7 200 aa7.73□□□□□ -1.17
SHMT2-226ENST00000556825 C14orf177Q52M58 125 aa7.72□□□□□ -1.17
SHMT2-226ENST00000556825 TYMSOSQ8TAI1 123 aa7.72□□□□□ -1.17
SHMT2-226ENST00000556825 MGAM2Q2M2H8 2515 aa7.69□□□□□ -1.18
SHMT2-226ENST00000556825 NBDYA0A0U1RRE5 68 aa7.68□□□□□ -1.18
SHMT2-226ENST00000556825 HUWE1Q7Z6Z7 4374 aaKnown RBP7.65□□□□□ -1.18
SHMT2-226ENST00000556825 SEC61BP60468 96 aaKnown RBP7.64□□□□□ -1.19
SHMT2-226ENST00000556825 DNAH1Q9P2D7 4330 aa7.64□□□□□ -1.19
SHMT2-226ENST00000556825 Q8N1X5 172 aa7.61□□□□□ -1.19
SHMT2-226ENST00000556825 C10orf95Q9H7T3 257 aa7.58□□□□□ -1.2
SHMT2-226ENST00000556825 COL7A1Q02388 2944 aa7.55□□□□□ -1.2
SHMT2-226ENST00000556825 DNAH9Q9NYC9 4486 aa7.54□□□□□ -1.2
SHMT2-226ENST00000556825 LYSTQ99698 3801 aa7.54□□□□□ -1.2
SHMT2-226ENST00000556825 COX6B2Q6YFQ2 88 aa7.53□□□□□ -1.2
SHMT2-226ENST00000556825 RPL37P61927 97 aaKnown RBP7.52□□□□□ -1.2
SHMT2-226ENST00000556825 DNAH10Q8IVF4 4471 aa7.52□□□□□ -1.21
SHMT2-226ENST00000556825 STAB2Q8WWQ8 2551 aa7.52□□□□□ -1.21
SHMT2-226ENST00000556825 KRTAP1-5Q9BYS1 174 aa7.52□□□□□ -1.21
SHMT2-226ENST00000556825 APLNQ9ULZ1 77 aa7.51□□□□□ -1.21
SHMT2-226ENST00000556825 CIRBP-AS1Q8TBR5 109 aa7.51□□□□□ -1.21
SHMT2-226ENST00000556825 UBE2DNLQ8IWF7 75 aa7.5□□□□□ -1.21
SHMT2-226ENST00000556825 MEGF8Q7Z7M0 2845 aa7.46□□□□□ -1.22
SHMT2-226ENST00000556825 DYNC2H1Q8NCM8 4307 aaKnown RBP7.45□□□□□ -1.22
SHMT2-226ENST00000556825 DNAH7Q8WXX0 4024 aa7.41□□□□□ -1.22
SHMT2-226ENST00000556825 TGP01266 2768 aa7.38□□□□□ -1.23
SHMT2-226ENST00000556825 SPACA4Q8TDM5 124 aa7.37□□□□□ -1.23
SHMT2-226ENST00000556825 PLECQ15149 4684 aaKnown RBP7.37□□□□□ -1.23
SHMT2-226ENST00000556825 PRKDCP78527 4128 aaKnown RBP7.36□□□□□ -1.23
SHMT2-226ENST00000556825 KRTAP3-1Q9BYR8 98 aa7.33□□□□□ -1.24
SHMT2-226ENST00000556825 FRAS1Q86XX4 4008 aa7.3□□□□□ -1.24
SHMT2-226ENST00000556825 STARD9Q9P2P6 4700 aa7.3□□□□□ -1.24
SHMT2-226ENST00000556825 Q6ZRN7 208 aaPredicted RBP7.29□□□□□ -1.24
SHMT2-226ENST00000556825 A0A0D9SG42 100 aa7.29□□□□□ -1.24
SHMT2-226ENST00000556825 VPS13DQ5THJ4 4388 aa7.26□□□□□ -1.25
SHMT2-226ENST00000556825 KRTAP13-4Q3LI77 160 aa7.26□□□□□ -1.25
SHMT2-226ENST00000556825 DNAH8Q96JB1 4490 aa7.23□□□□□ -1.25
SHMT2-226ENST00000556825 XP32Q5T750 250 aa7.22□□□□□ -1.25
SHMT2-226ENST00000556825 S4R3F8 94 aa7.22□□□□□ -1.25
SHMT2-226ENST00000556825 KRTAP10-6P60371 365 aaPredicted RBP7.21□□□□□ -1.26
SHMT2-226ENST00000556825 KRTAP3-2Q9BYR7 98 aa7.21□□□□□ -1.26
SHMT2-226ENST00000556825 KMT2AQ03164 3969 aa7.17□□□□□ -1.26
SHMT2-226ENST00000556825 DNAH2Q9P225 4427 aa7.16□□□□□ -1.26
SHMT2-226ENST00000556825 PLAC4Q8WY50 150 aa7.15□□□□□ -1.26
SHMT2-226ENST00000556825 HECTD4Q9Y4D8 3996 aa7.14□□□□□ -1.27
SHMT2-226ENST00000556825 KRTAP13-2Q52LG2 175 aa7.12□□□□□ -1.27
SHMT2-226ENST00000556825 KMT2CQ8NEZ4 4911 aaKnown RBP7.12□□□□□ -1.27
SHMT2-226ENST00000556825 DNAH17Q9UFH2 4485 aa7.12□□□□□ -1.27
SHMT2-226ENST00000556825 KRTAP12-2P59991 146 aa7.11□□□□□ -1.27
SHMT2-226ENST00000556825 DNAH6Q9C0G6 4158 aa7.1□□□□□ -1.27
SHMT2-226ENST00000556825 CAMK2N1Q7Z7J9 78 aa7.09□□□□□ -1.27
SHMT2-226ENST00000556825 RYR3Q15413 4870 aa7.08□□□□□ -1.28
SHMT2-226ENST00000556825 KRTAP17-1Q9BYP8 105 aa7.07□□□□□ -1.28
SHMT2-226ENST00000556825 BIRC6Q9NR09 4857 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms