RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 DNAH6Q9C0G6 4158 aa7.93□□□□□ -1.14
SHMT2-222ENST00000555774 A8MUN3 132 aa7.93□□□□□ -1.14
SHMT2-222ENST00000555774 C8orf87E5RJ46 101 aa7.93□□□□□ -1.14
SHMT2-222ENST00000555774 A0A087X002 238 aa7.92□□□□□ -1.14
SHMT2-222ENST00000555774 LOC101927531A0A1B0GV80 90 aa7.92□□□□□ -1.14
SHMT2-222ENST00000555774 NOTCH2NLQ7Z3S9 236 aa7.92□□□□□ -1.14
SHMT2-222ENST00000555774 CIRBP-AS1Q8TBR5 109 aa7.92□□□□□ -1.14
SHMT2-222ENST00000555774 LY6G6CO95867 125 aa7.91□□□□□ -1.14
SHMT2-222ENST00000555774 Q5VV11 94 aa7.91□□□□□ -1.14
SHMT2-222ENST00000555774 SPINK6Q6UWN8 80 aa7.9□□□□□ -1.15
SHMT2-222ENST00000555774 KMT2AQ03164 3969 aa7.89□□□□□ -1.15
SHMT2-222ENST00000555774 C4orf48Q5BLP8 95 aa7.88□□□□□ -1.15
SHMT2-222ENST00000555774 KRTAP13-3Q3SY46 172 aa7.87□□□□□ -1.15
SHMT2-222ENST00000555774 FRAS1Q86XX4 4008 aa7.87□□□□□ -1.15
SHMT2-222ENST00000555774 PRR15LQ9BU68 103 aa7.86□□□□□ -1.15
SHMT2-222ENST00000555774 KRTAP10-2P60368 255 aa7.85□□□□□ -1.15
SHMT2-222ENST00000555774 Q75L30 129 aa7.85□□□□□ -1.15
SHMT2-222ENST00000555774 Q6ZSA8 131 aa7.84□□□□□ -1.15
SHMT2-222ENST00000555774 ALMS1Q8TCU4 4167 aa7.84□□□□□ -1.15
SHMT2-222ENST00000555774 Q5W150 140 aa7.83□□□□□ -1.16
SHMT2-222ENST00000555774 DNAH11Q96DT5 4516 aa7.83□□□□□ -1.16
SHMT2-222ENST00000555774 DNAH5Q8TE73 4624 aa7.83□□□□□ -1.16
SHMT2-222ENST00000555774 CHKB-CPT1BH3BT56 60 aa7.83□□□□□ -1.16
SHMT2-222ENST00000555774 HRES1P13985 223 aa7.83□□□□□ -1.16
SHMT2-222ENST00000555774 LINC01558Q9Y6Z2 57 aa7.83□□□□□ -1.16
SHMT2-222ENST00000555774 FBN3Q75N90 2809 aa7.81□□□□□ -1.16
SHMT2-222ENST00000555774 LINC00313P59037 77 aa7.81□□□□□ -1.16
SHMT2-222ENST00000555774 MEGF8Q7Z7M0 2845 aa7.8□□□□□ -1.16
SHMT2-222ENST00000555774 FAM229AH3BQW9 127 aa7.79□□□□□ -1.16
SHMT2-222ENST00000555774 KRTAP13-2Q52LG2 175 aa7.79□□□□□ -1.16
SHMT2-222ENST00000555774 KRTAP10-1P60331 282 aa7.77□□□□□ -1.17
SHMT2-222ENST00000555774 SPAG11AQ6PDA7 123 aa7.75□□□□□ -1.17
SHMT2-222ENST00000555774 ACYP2P14621 99 aa7.74□□□□□ -1.17
SHMT2-222ENST00000555774 A6NED7 52 aa7.73□□□□□ -1.17
SHMT2-222ENST00000555774 KRTAP1-4P0C5Y4 121 aa7.73□□□□□ -1.17
SHMT2-222ENST00000555774 DMAC1Q96GE9 116 aa7.72□□□□□ -1.17
SHMT2-222ENST00000555774 KRTAP16-1A8MUX0 517 aa7.71□□□□□ -1.18
SHMT2-222ENST00000555774 IGKV2-30P06310 120 aa7.71□□□□□ -1.18
SHMT2-222ENST00000555774 TGP01266 2768 aa7.7□□□□□ -1.18
SHMT2-222ENST00000555774 DNHD1Q96M86 4753 aa7.7□□□□□ -1.18
SHMT2-222ENST00000555774 CDC42SE1Q9NRR8 79 aa7.69□□□□□ -1.18
SHMT2-222ENST00000555774 ATP11AUNQ6ZP68 121 aa7.68□□□□□ -1.18
SHMT2-222ENST00000555774 LCA10Q71F78 164 aa7.68□□□□□ -1.18
SHMT2-222ENST00000555774 PMAIP1Q13794 54 aa7.68□□□□□ -1.18
SHMT2-222ENST00000555774 PKD1P98161 4303 aa7.68□□□□□ -1.18
SHMT2-222ENST00000555774 LRP1BQ9NZR2 4599 aa7.68□□□□□ -1.18
SHMT2-222ENST00000555774 FAT2Q9NYQ8 4349 aa7.68□□□□□ -1.18
SHMT2-222ENST00000555774 A8MU10 97 aa7.67□□□□□ -1.18
SHMT2-222ENST00000555774 SPINK1P00995 79 aa7.65□□□□□ -1.18
SHMT2-222ENST00000555774 PRR26Q8N8Z3 221 aa7.65□□□□□ -1.18
SHMT2-222ENST00000555774 TYMSOSQ8TAI1 123 aa7.63□□□□□ -1.19
SHMT2-222ENST00000555774 PLA2G1BP04054 148 aaKnown RBP7.63□□□□□ -1.19
SHMT2-222ENST00000555774 RETNLBQ9BQ08 111 aa7.62□□□□□ -1.19
SHMT2-222ENST00000555774 RPS29P62273 56 aaKnown RBP7.61□□□□□ -1.19
SHMT2-222ENST00000555774 SPTSSBQ8NFR3 76 aa7.6□□□□□ -1.19
SHMT2-222ENST00000555774 SPINK7P58062 85 aa7.59□□□□□ -1.19
SHMT2-222ENST00000555774 KRTAP21-3Q3LHN1 58 aa7.56□□□□□ -1.2
SHMT2-222ENST00000555774 HYDINQ4G0P3 5121 aa7.56□□□□□ -1.2
SHMT2-222ENST00000555774 IGKV2D-30A0A075B6S6 120 aa7.55□□□□□ -1.2
SHMT2-222ENST00000555774 VPS13BQ7Z7G8 4022 aa7.54□□□□□ -1.2
SHMT2-222ENST00000555774 A6NN06 94 aa7.54□□□□□ -1.2
SHMT2-222ENST00000555774 LINC00304Q8N9R0 145 aa7.54□□□□□ -1.2
SHMT2-222ENST00000555774 SACSQ9NZJ4 4579 aa7.54□□□□□ -1.2
SHMT2-222ENST00000555774 KTN1-AS1Q86SY8 53 aa7.53□□□□□ -1.2
SHMT2-222ENST00000555774 A0A1B0GU69 56 aa7.51□□□□□ -1.21
SHMT2-222ENST00000555774 C7orf65Q6ZTY9 151 aa7.5□□□□□ -1.21
SHMT2-222ENST00000555774 SEC61GP60059 68 aa7.44□□□□□ -1.22
SHMT2-222ENST00000555774 SPATA8Q6RVD6 105 aa7.42□□□□□ -1.22
SHMT2-222ENST00000555774 A8MUU9 505 aa7.4□□□□□ -1.23
SHMT2-222ENST00000555774 C20orf166-AS1Q96NR2 134 aa7.4□□□□□ -1.23
SHMT2-222ENST00000555774 UQCR11O14957 56 aa7.39□□□□□ -1.23
SHMT2-222ENST00000555774 A0A1B0GVY2 172 aa7.39□□□□□ -1.23
SHMT2-222ENST00000555774 PKHD1L1Q86WI1 4243 aa7.38□□□□□ -1.23
SHMT2-222ENST00000555774 DYNC1H1Q14204 4646 aaKnown RBP7.38□□□□□ -1.23
SHMT2-222ENST00000555774 SMR3BP02814 79 aaPredicted RBP7.36□□□□□ -1.23
SHMT2-222ENST00000555774 KRTAP10-4P60372 401 aaPredicted RBP7.36□□□□□ -1.23
SHMT2-222ENST00000555774 MIR22HGQ0VDD5 57 aa7.36□□□□□ -1.23
SHMT2-222ENST00000555774 Q8N1X5 172 aa7.34□□□□□ -1.23
SHMT2-222ENST00000555774 APOBP04114 4563 aaKnown RBP7.34□□□□□ -1.23
SHMT2-222ENST00000555774 PKHD1P08F94 4074 aa7.34□□□□□ -1.23
SHMT2-222ENST00000555774 C9orf92A6NGG3 77 aa7.31□□□□□ -1.24
SHMT2-222ENST00000555774 RBM12B-AS1Q9P1G2 102 aa7.28□□□□□ -1.24
SHMT2-222ENST00000555774 FAT1Q14517 4588 aa7.23□□□□□ -1.25
SHMT2-222ENST00000555774 KRTAP3-1Q9BYR8 98 aa7.21□□□□□ -1.26
SHMT2-222ENST00000555774 COX6B2Q6YFQ2 88 aa7.16□□□□□ -1.26
SHMT2-222ENST00000555774 RYR2Q92736 4967 aa7.15□□□□□ -1.26
SHMT2-222ENST00000555774 KRTAP10-8P60410 259 aa7.11□□□□□ -1.27
SHMT2-222ENST00000555774 A0A1B0GU33 70 aa7.1□□□□□ -1.27
SHMT2-222ENST00000555774 PRAC1Q96KF2 57 aa7.1□□□□□ -1.27
SHMT2-222ENST00000555774 H0YAA0 97 aa7.1□□□□□ -1.27
SHMT2-222ENST00000555774 H1FX-AS1Q4G0G2 97 aa7.09□□□□□ -1.27
SHMT2-222ENST00000555774 FAT3Q8TDW7 4589 aa7.09□□□□□ -1.27
SHMT2-222ENST00000555774 ADM2Q7Z4H4 148 aa7.08□□□□□ -1.28
SHMT2-222ENST00000555774 FLG2Q5D862 2391 aaPredicted RBP7.07□□□□□ -1.28
SHMT2-222ENST00000555774 TNXBP22105 4242 aa7.05□□□□□ -1.28
SHMT2-222ENST00000555774 RPL37P61927 97 aaKnown RBP7.05□□□□□ -1.28
SHMT2-222ENST00000555774 Q5VSD8 79 aa7.03□□□□□ -1.28
SHMT2-222ENST00000555774 J3QL48 77 aa7□□□□□ -1.29
SHMT2-222ENST00000555774 XP32Q5T750 250 aa6.98□□□□□ -1.29
SHMT2-222ENST00000555774 HSPG2P98160 4391 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 128.2 ms