RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 TPRXLQ17RH7 258 aa6.13□□□□□ -1.43
SHMT2-218ENST00000555213 DEFB116Q30KQ4 102 aa6.13□□□□□ -1.43
SHMT2-218ENST00000555213 ASB16-AS1Q495Z4 193 aa6.13□□□□□ -1.43
SHMT2-218ENST00000555213 CXCL6P80162 114 aa6.11□□□□□ -1.43
SHMT2-218ENST00000555213 C1orf195Q5TG92 126 aa6.11□□□□□ -1.43
SHMT2-218ENST00000555213 BPY2O14599 106 aa6.09□□□□□ -1.43
SHMT2-218ENST00000555213 LCE2AQ5TA79 106 aaPredicted RBP6.08□□□□□ -1.44
SHMT2-218ENST00000555213 ATP5EP2Q5VTU8 51 aa6.08□□□□□ -1.44
SHMT2-218ENST00000555213 Q8N9L7 120 aa6.08□□□□□ -1.44
SHMT2-218ENST00000555213 IGKV4-1P06312 121 aa6.07□□□□□ -1.44
SHMT2-218ENST00000555213 KRTAP13-3Q3SY46 172 aa6.07□□□□□ -1.44
SHMT2-218ENST00000555213 IMUPQ9GZP8 106 aa6.07□□□□□ -1.44
SHMT2-218ENST00000555213 LRP2P98164 4655 aa6.06□□□□□ -1.44
SHMT2-218ENST00000555213 A0A087WVE0 104 aa6.05□□□□□ -1.44
SHMT2-218ENST00000555213 J3KT08 172 aa6.04□□□□□ -1.44
SHMT2-218ENST00000555213 K7EQZ3 153 aa6.04□□□□□ -1.44
SHMT2-218ENST00000555213 A8MWP4 228 aa6.03□□□□□ -1.44
SHMT2-218ENST00000555213 LCE2CQ5TA81 110 aa6.03□□□□□ -1.44
SHMT2-218ENST00000555213 PRR15Q8IV56 129 aa6.03□□□□□ -1.44
SHMT2-218ENST00000555213 NOTCH2NLQ7Z3S9 236 aa6.02□□□□□ -1.45
SHMT2-218ENST00000555213 C9orf92A6NGG3 77 aa6.01□□□□□ -1.45
SHMT2-218ENST00000555213 HIST1H4AP62805 103 aaKnown RBP6.01□□□□□ -1.45
SHMT2-218ENST00000555213 A0A1B0GVX0 72 aa5.98□□□□□ -1.45
SHMT2-218ENST00000555213 XP32Q5T750 250 aa5.98□□□□□ -1.45
SHMT2-218ENST00000555213 KRTAP9-2Q9BYQ4 174 aa5.97□□□□□ -1.45
SHMT2-218ENST00000555213 MMP24-AS1A0A0U1RRL7 71 aa5.96□□□□□ -1.46
SHMT2-218ENST00000555213 SCGB1A1P11684 91 aa5.96□□□□□ -1.46
SHMT2-218ENST00000555213 SEC61BP60468 96 aaKnown RBP5.96□□□□□ -1.46
SHMT2-218ENST00000555213 IGHV6-1A0A0B4J1U7 121 aa5.95□□□□□ -1.46
SHMT2-218ENST00000555213 NDUFB1O75438 58 aa5.95□□□□□ -1.46
SHMT2-218ENST00000555213 C8orf17Q9NRJ1 99 aa5.95□□□□□ -1.46
SHMT2-218ENST00000555213 FAM236AA0A1B0GUQ0 79 aa5.94□□□□□ -1.46
SHMT2-218ENST00000555213 FAM236BA0A1B0GV22 79 aa5.94□□□□□ -1.46
SHMT2-218ENST00000555213 LPAP08519 4548 aa5.94□□□□□ -1.46
SHMT2-218ENST00000555213 KRTAP16-1A8MUX0 517 aa5.93□□□□□ -1.46
SHMT2-218ENST00000555213 HCG22E2RYF7 251 aa5.93□□□□□ -1.46
SHMT2-218ENST00000555213 LORP23490 312 aaPredicted RBP5.92□□□□□ -1.46
SHMT2-218ENST00000555213 WFDC13Q8IUB5 93 aa5.92□□□□□ -1.46
SHMT2-218ENST00000555213 LINC00313P59037 77 aa5.91□□□□□ -1.46
SHMT2-218ENST00000555213 KRTAP9-6A0A140TA67 174 aa5.9□□□□□ -1.46
SHMT2-218ENST00000555213 C8orf87E5RJ46 101 aa5.9□□□□□ -1.46
SHMT2-218ENST00000555213 RPL37P61927 97 aaKnown RBP5.9□□□□□ -1.46
SHMT2-218ENST00000555213 CASC2Q6XLA1 102 aa5.9□□□□□ -1.46
SHMT2-218ENST00000555213 hDV103S1A0JD37 113 aa5.89□□□□□ -1.47
SHMT2-218ENST00000555213 Q75L30 129 aa5.88□□□□□ -1.47
SHMT2-218ENST00000555213 TMEM254Q8TBM7 123 aa5.88□□□□□ -1.47
SHMT2-218ENST00000555213 OCR1Q9BZK8 76 aa5.88□□□□□ -1.47
SHMT2-218ENST00000555213 MRPL34Q9BQ48 92 aaKnown RBP5.87□□□□□ -1.47
SHMT2-218ENST00000555213 Q8N9P0 234 aaPredicted RBP5.86□□□□□ -1.47
SHMT2-218ENST00000555213 ATOX1O00244 68 aa5.85□□□□□ -1.47
SHMT2-218ENST00000555213 PCOTHQ58A44 107 aa5.85□□□□□ -1.47
SHMT2-218ENST00000555213 ATP11AUNQ6ZP68 121 aa5.85□□□□□ -1.47
SHMT2-218ENST00000555213 C20orf166-AS1Q96NR2 134 aa5.85□□□□□ -1.47
SHMT2-218ENST00000555213 A0A0U1RQV1 116 aa5.84□□□□□ -1.47
SHMT2-218ENST00000555213 A8MUU9 505 aa5.83□□□□□ -1.48
SHMT2-218ENST00000555213 TRAV7A0A075B6U4 112 aa5.82□□□□□ -1.48
SHMT2-218ENST00000555213 Q5W150 140 aa5.81□□□□□ -1.48
SHMT2-218ENST00000555213 SERP2Q8N6R1 65 aa5.81□□□□□ -1.48
SHMT2-218ENST00000555213 ANAPC13Q9BS18 74 aa5.8□□□□□ -1.48
SHMT2-218ENST00000555213 SMIM20Q8N5G0 67 aa5.79□□□□□ -1.48
SHMT2-218ENST00000555213 COX7CP15954 63 aa5.78□□□□□ -1.48
SHMT2-218ENST00000555213 PCP4P48539 62 aa5.78□□□□□ -1.48
SHMT2-218ENST00000555213 UQCRQO14949 82 aa5.77□□□□□ -1.49
SHMT2-218ENST00000555213 TP53AIP1Q9HCN2 124 aa5.77□□□□□ -1.49
SHMT2-218ENST00000555213 MUC17Q685J3 4493 aa5.77□□□□□ -1.49
SHMT2-218ENST00000555213 FAT4Q6V0I7 4981 aa5.76□□□□□ -1.49
SHMT2-218ENST00000555213 MUC2Q02817 5179 aa5.76□□□□□ -1.49
SHMT2-218ENST00000555213 CCDC179H3BU77 68 aa5.76□□□□□ -1.49
SHMT2-218ENST00000555213 NDUFS5O43920 106 aa5.75□□□□□ -1.49
SHMT2-218ENST00000555213 C5orf47Q569G3 176 aa5.74□□□□□ -1.49
SHMT2-218ENST00000555213 KRTAP4-1Q9BYQ7 146 aa5.74□□□□□ -1.49
SHMT2-218ENST00000555213 ZCCHC13Q8WW36 166 aaKnown RBP5.73□□□□□ -1.49
SHMT2-218ENST00000555213 CYSTM1Q9H1C7 97 aa5.72□□□□□ -1.49
SHMT2-218ENST00000555213 H0Y9P7 68 aa5.7□□□□□ -1.5
SHMT2-218ENST00000555213 TRAV22A0A0B4J277 110 aa5.69□□□□□ -1.5
SHMT2-218ENST00000555213 C20orf197Q8N268 126 aa5.69□□□□□ -1.5
SHMT2-218ENST00000555213 SNURFQ9Y675 71 aa5.68□□□□□ -1.5
SHMT2-218ENST00000555213 KLKP1Q107X0 134 aa5.67□□□□□ -1.5
SHMT2-218ENST00000555213 LINC00208Q96KT6 92 aa5.67□□□□□ -1.5
SHMT2-218ENST00000555213 C1orf64Q8NEQ6 169 aa5.66□□□□□ -1.5
SHMT2-218ENST00000555213 H3BPC8 53 aa5.65□□□□□ -1.5
SHMT2-218ENST00000555213 MP68P56378 58 aa5.65□□□□□ -1.5
SHMT2-218ENST00000555213 COX6B2Q6YFQ2 88 aa5.65□□□□□ -1.5
SHMT2-218ENST00000555213 IGKV2-30P06310 120 aa5.64□□□□□ -1.51
SHMT2-218ENST00000555213 CYP4F30PQ9H0H9 118 aa5.64□□□□□ -1.51
SHMT2-218ENST00000555213 H7BZZ5 65 aa5.61□□□□□ -1.51
SHMT2-218ENST00000555213 SPINK7P58062 85 aa5.61□□□□□ -1.51
SHMT2-218ENST00000555213 LOC101927531A0A1B0GV80 90 aa5.6□□□□□ -1.51
SHMT2-218ENST00000555213 RBM12B-AS1Q9P1G2 102 aa5.59□□□□□ -1.51
SHMT2-218ENST00000555213 FAM236DA0A1B0GTK5 79 aa5.58□□□□□ -1.52
SHMT2-218ENST00000555213 FAM236CP0DP71 79 aa5.58□□□□□ -1.52
SHMT2-218ENST00000555213 IGKV2D-30A0A075B6S6 120 aa5.57□□□□□ -1.52
SHMT2-218ENST00000555213 KRTAP19-2Q3LHN2 52 aa5.57□□□□□ -1.52
SHMT2-218ENST00000555213 C7orf65Q6ZTY9 151 aa5.57□□□□□ -1.52
SHMT2-218ENST00000555213 HRES1P13985 223 aa5.56□□□□□ -1.52
SHMT2-218ENST00000555213 NDUFC1O43677 76 aa5.55□□□□□ -1.52
SHMT2-218ENST00000555213 CRCT1Q9UGL9 99 aa5.55□□□□□ -1.52
SHMT2-218ENST00000555213 MPLKIPQ8TAP9 179 aa5.52□□□□□ -1.53
SHMT2-218ENST00000555213 FSIP2Q5CZC0 6907 aa5.52□□□□□ -1.53
SHMT2-218ENST00000555213 KRTAP3-1Q9BYR8 98 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 136.5 ms